Wall clock time and date at job start Wed Apr 1 2020 02:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42891 * 114.00041 * 2 1 4 4 H 1.09001 * 109.47402 * 29.99295 * 3 2 1 5 5 C 1.53007 * 109.46806 * 269.99579 * 3 2 1 6 6 C 1.52997 * 109.47606 * 149.99768 * 3 2 1 7 7 C 1.53004 * 109.47000 * 294.99661 * 6 3 2 8 8 C 1.50700 * 109.47208 * 179.97438 * 7 6 3 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 6 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 12 12 C 1.52999 * 109.46992 * 179.97438 * 11 10 8 13 13 O 1.42898 * 112.94099 * 53.43048 * 12 11 10 14 14 C 1.53941 * 113.73507 * 281.72635 * 12 11 10 15 15 N 1.47954 * 86.18198 * 221.92007 * 14 12 11 16 16 C 1.46902 * 111.00147 * 137.58286 * 15 14 12 17 17 C 1.50699 * 109.46877 * 70.63952 * 16 15 14 18 18 O 1.21292 * 120.00368 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99803 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00205 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99781 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00164 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00032 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00019 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47025 * 89.99835 * 24 22 20 26 26 H 1.48496 * 109.47332 * 210.00142 * 24 22 20 27 27 H 1.48503 * 109.47067 * 330.00130 * 24 22 20 28 28 C 1.47965 * 90.76740 * 24.68920 * 15 14 12 29 29 H 1.08996 * 109.46668 * 60.00864 * 1 2 3 30 30 H 1.09000 * 109.46805 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47219 * 300.00371 * 1 2 3 32 32 H 1.09001 * 109.46908 * 300.00018 * 5 3 2 33 33 H 1.08996 * 109.47017 * 60.00206 * 5 3 2 34 34 H 1.09004 * 109.46925 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47849 * 174.99578 * 6 3 2 36 36 H 1.08998 * 109.47443 * 54.99446 * 6 3 2 37 37 H 1.09009 * 109.46730 * 59.99606 * 7 6 3 38 38 H 1.08998 * 109.46846 * 300.00150 * 7 6 3 39 39 H 0.97000 * 119.99894 * 359.71837 * 10 8 7 40 40 H 1.08995 * 109.47421 * 299.99467 * 11 10 8 41 41 H 1.09001 * 109.47621 * 60.00103 * 11 10 8 42 42 H 0.96700 * 113.99682 * 309.67520 * 13 12 11 43 43 H 1.08994 * 113.75732 * 336.23881 * 14 12 11 44 44 H 1.09005 * 113.75814 * 107.60218 * 14 12 11 45 45 H 1.08996 * 109.47371 * 190.64268 * 16 15 14 46 46 H 1.09003 * 109.46766 * 310.63828 * 16 15 14 47 47 H 0.97004 * 120.00213 * 0.02562 * 19 17 16 48 48 H 0.96999 * 120.00201 * 179.97438 * 23 22 20 49 49 H 1.08990 * 113.75832 * 220.99495 * 28 15 14 50 50 H 1.09003 * 113.85612 * 89.63667 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2178 1.7712 -1.4426 6 6 3.3589 1.2633 0.7213 7 6 3.1382 0.9186 2.1955 8 6 4.4666 0.8765 2.9059 9 8 5.4892 1.0998 2.2932 10 7 4.5187 0.5848 4.2207 11 6 5.8106 0.5380 4.9099 12 6 5.5904 0.1884 6.3830 13 8 4.8230 -1.0034 6.5639 14 6 5.1064 1.3751 7.2358 15 7 6.0526 0.8929 8.2660 16 6 6.7785 2.0129 8.8797 17 6 5.8357 2.8086 9.7451 18 8 4.6735 2.4752 9.8416 19 7 6.2839 3.8907 10.4119 20 6 5.4264 4.6143 11.1996 21 1 4.3916 4.3175 11.2855 22 6 5.8886 5.7296 11.8875 23 7 7.1479 6.0905 11.7834 24 14 4.7200 6.7160 12.9603 25 1 4.7329 6.1678 14.3403 26 1 5.1526 8.1363 12.9877 27 1 3.3453 6.6280 12.4056 28 6 6.8757 0.2321 7.2291 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.8830 1.0772 -1.9563 33 1 1.2570 1.8012 -1.9564 34 1 2.6615 2.7668 -1.4426 35 1 3.8427 2.2370 0.6443 36 1 3.9931 0.5052 0.2619 37 1 2.6544 -0.0552 2.2725 38 1 2.5040 1.6767 2.6549 39 1 3.7009 0.4059 4.7106 40 1 6.4423 -0.2200 4.4468 41 1 6.2971 1.5107 4.8365 42 1 4.0002 -1.0222 6.0562 43 1 5.3673 2.3489 6.8214 44 1 4.0601 1.3045 7.5330 45 1 7.5939 1.6261 9.4909 46 1 7.1837 2.6552 8.0977 47 1 7.2133 4.1576 10.3345 48 1 7.4705 6.8693 12.2633 49 1 7.2429 -0.7517 7.5210 50 1 7.6547 0.8702 6.8117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500821544.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:36 Heat of formation + Delta-G solvation = -135.080362 kcal Electronic energy + Delta-G solvation = -29788.655026 eV Core-core repulsion = 25431.264759 eV Total energy + Delta-G solvation = -4357.390267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.76233 -39.78341 -38.69702 -37.93678 -35.85999 -34.49847 -34.09933 -33.89959 -31.32633 -30.99213 -30.07002 -27.64421 -27.06907 -26.17877 -25.19008 -24.37487 -22.46881 -21.49128 -20.71039 -19.98806 -19.21939 -18.00370 -17.75136 -17.31059 -16.75273 -16.42400 -15.94887 -15.78780 -15.58508 -15.48273 -15.23496 -15.09474 -14.68149 -14.37753 -14.07410 -13.84057 -13.65180 -13.60292 -13.32192 -13.09462 -13.00964 -12.83009 -12.66016 -12.27954 -12.05793 -11.95570 -11.88179 -11.75952 -11.51286 -11.49523 -11.30155 -11.04424 -11.01294 -10.77134 -10.41402 -10.24317 -10.16632 -9.99592 -9.94776 -9.52325 -9.39993 -8.67674 -8.25317 -7.98445 -6.43608 -3.84506 2.39434 2.80020 3.16165 3.24846 3.30279 3.35163 3.67178 3.87347 3.98342 4.18432 4.20962 4.33008 4.38053 4.53775 4.62045 4.76050 4.84049 4.86581 4.91698 4.93483 5.08196 5.10301 5.20988 5.22140 5.24908 5.29196 5.30091 5.43898 5.46887 5.49687 5.63028 5.63632 5.68104 5.73232 5.77141 5.82977 5.88186 6.05609 6.12512 6.23063 6.56982 6.78149 7.09770 7.14915 7.42571 7.53128 7.93555 8.03475 8.59206 9.15841 9.51904 10.03533 10.74112 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.001857 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.027064 B =15075.605170 C =16166.323138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.083 3.917 4 H 0.062 0.938 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.140 4.140 8 C 0.515 3.485 9 O -0.540 6.540 10 N -0.731 5.731 11 C 0.101 3.899 12 C 0.088 3.912 13 O -0.521 6.521 14 C 0.000 4.000 15 N -0.440 5.440 16 C 0.007 3.993 17 C 0.443 3.557 18 O -0.579 6.579 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.017 3.983 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.399 0.601 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.371 0.629 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.100 0.900 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.501 -10.254 -23.436 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C 0.025 3.975 4 H 0.080 0.920 5 C -0.232 4.232 6 C -0.139 4.139 7 C -0.180 4.180 8 C 0.302 3.698 9 O -0.416 6.416 10 N -0.384 5.384 11 C -0.024 4.024 12 C 0.045 3.955 13 O -0.326 6.326 14 C -0.129 4.129 15 N -0.163 5.163 16 C -0.125 4.125 17 C 0.229 3.771 18 O -0.463 6.463 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.195 1.195 28 C -0.112 4.112 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.234 0.766 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.219 0.781 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.111 0.889 46 H 0.072 0.928 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.119 0.881 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.054 -10.823 -22.730 26.145 hybrid contribution -0.575 1.663 -0.084 1.761 sum -7.628 -9.160 -22.814 25.741 Atomic orbital electron populations 1.22789 0.81200 1.02766 0.99942 1.87938 1.19504 1.27851 1.95092 1.22209 0.94839 0.84666 0.95776 0.91989 1.22269 1.02331 1.01946 0.96694 1.21462 0.95691 1.03874 0.92828 1.21663 0.94989 1.04843 0.96500 1.20748 0.91721 0.75758 0.81560 1.90716 1.36439 1.48604 1.65855 1.45942 1.09783 1.72657 1.10064 1.22021 0.85974 1.02947 0.91434 1.23056 0.94619 0.86667 0.91149 1.86636 1.37006 1.37648 1.71291 1.24516 1.01213 0.95906 0.91297 1.68473 1.08816 1.19967 1.19002 1.22513 0.97537 0.93373 0.99065 1.19654 0.88973 0.83373 0.85128 1.90519 1.18273 1.70282 1.67232 1.41869 1.12559 1.24191 1.41441 1.19690 0.94488 1.06718 1.21976 0.87950 1.25266 0.96601 0.97670 0.98426 1.69607 1.14169 1.27214 1.43272 0.85853 0.80077 0.78395 0.79932 1.20364 1.20930 1.19459 1.24122 0.93817 1.01921 0.91338 0.94185 0.89659 0.93943 0.91595 0.92502 0.91382 0.89744 0.90157 0.88072 0.88926 0.76630 0.90334 0.90175 0.78146 0.90860 0.88284 0.88904 0.92752 0.77484 0.91854 0.88144 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.82 101.05 1.09 1.25 16 2 O -0.38 -2.97 9.88 -35.23 -0.35 -3.32 16 3 C 0.08 0.54 2.72 -26.73 -0.07 0.47 16 4 H 0.06 0.34 7.79 -51.93 -0.40 -0.07 16 5 C -0.17 -1.04 9.53 37.16 0.35 -0.69 16 6 C -0.10 -0.77 4.21 -26.73 -0.11 -0.89 16 7 C -0.14 -0.98 5.60 -27.88 -0.16 -1.13 16 8 C 0.52 5.16 7.83 -10.98 -0.09 5.07 16 9 O -0.54 -7.54 15.98 5.55 0.09 -7.45 16 10 N -0.73 -6.24 5.34 -60.30 -0.32 -6.57 16 11 C 0.10 1.02 5.28 -4.04 -0.02 1.00 16 12 C 0.09 1.01 1.52 -89.68 -0.14 0.87 16 13 O -0.52 -6.09 13.50 -35.23 -0.48 -6.56 16 14 C 0.00 0.00 6.16 -2.77 -0.02 -0.02 16 15 N -0.44 -7.38 5.95 -239.62 -1.43 -8.80 16 16 C 0.01 0.13 5.31 -4.97 -0.03 0.10 16 17 C 0.44 10.51 7.59 -10.99 -0.08 10.42 16 18 O -0.58 -15.69 15.13 5.55 0.08 -15.61 16 19 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 20 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 24 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 C 0.02 0.22 7.37 -2.76 -0.02 0.20 16 29 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.18 8.08 -51.93 -0.42 -0.24 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.10 0.62 7.82 -51.92 -0.41 0.21 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.40 2.43 7.31 -40.82 -0.30 2.13 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 42 H 0.37 2.80 7.61 45.56 0.35 3.15 16 43 H 0.07 1.07 7.67 -51.93 -0.40 0.67 16 44 H 0.10 1.62 8.09 -51.93 -0.42 1.20 16 45 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.05 0.85 7.69 -51.93 -0.40 0.45 16 47 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 50 H 0.08 0.87 7.75 -51.93 -0.40 0.47 16 LS Contribution 414.25 15.07 6.24 6.24 Total: -1.00 -35.83 414.25 -7.71 -43.54 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -7.67 Total: 12.01 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 0.47 Total: 8.65 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -1.08 Total: -53.51 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.65 Total: -32.94 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.83 -7.71 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500821544.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.540 kcal (2) G-P(sol) polarization free energy of solvation -35.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds