Wall clock time and date at job start Wed Apr 1 2020 02:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42891 * 114.00041 * 2 1 4 4 H 1.09001 * 109.47402 * 29.99295 * 3 2 1 5 5 C 1.53007 * 109.46806 * 269.99579 * 3 2 1 6 6 C 1.52997 * 109.47606 * 149.99768 * 3 2 1 7 7 C 1.53004 * 109.47000 * 294.99661 * 6 3 2 8 8 C 1.50700 * 109.47208 * 179.97438 * 7 6 3 9 9 O 1.21283 * 119.99803 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99675 * 180.27843 * 8 7 6 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 7 12 12 C 1.52999 * 109.46992 * 179.97438 * 11 10 8 13 13 O 1.42898 * 112.94099 * 53.43048 * 12 11 10 14 14 C 1.53941 * 113.73507 * 281.72635 * 12 11 10 15 15 N 1.47954 * 86.18198 * 221.92007 * 14 12 11 16 16 C 1.46902 * 111.00147 * 137.58286 * 15 14 12 17 17 C 1.50699 * 109.46877 * 70.63952 * 16 15 14 18 18 O 1.21292 * 120.00368 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99803 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00205 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99781 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00164 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00032 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00019 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47025 * 89.99835 * 24 22 20 26 26 H 1.48496 * 109.47332 * 210.00142 * 24 22 20 27 27 H 1.48503 * 109.47067 * 330.00130 * 24 22 20 28 28 C 1.47965 * 90.76740 * 24.68920 * 15 14 12 29 29 H 1.08996 * 109.46668 * 60.00864 * 1 2 3 30 30 H 1.09000 * 109.46805 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47219 * 300.00371 * 1 2 3 32 32 H 1.09001 * 109.46908 * 300.00018 * 5 3 2 33 33 H 1.08996 * 109.47017 * 60.00206 * 5 3 2 34 34 H 1.09004 * 109.46925 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47849 * 174.99578 * 6 3 2 36 36 H 1.08998 * 109.47443 * 54.99446 * 6 3 2 37 37 H 1.09009 * 109.46730 * 59.99606 * 7 6 3 38 38 H 1.08998 * 109.46846 * 300.00150 * 7 6 3 39 39 H 0.97000 * 119.99894 * 359.71837 * 10 8 7 40 40 H 1.08995 * 109.47421 * 299.99467 * 11 10 8 41 41 H 1.09001 * 109.47621 * 60.00103 * 11 10 8 42 42 H 0.96700 * 113.99682 * 309.67520 * 13 12 11 43 43 H 1.08994 * 113.75732 * 336.23881 * 14 12 11 44 44 H 1.09005 * 113.75814 * 107.60218 * 14 12 11 45 45 H 1.08996 * 109.47371 * 190.64268 * 16 15 14 46 46 H 1.09003 * 109.46766 * 310.63828 * 16 15 14 47 47 H 0.97004 * 120.00213 * 0.02562 * 19 17 16 48 48 H 0.96999 * 120.00201 * 179.97438 * 23 22 20 49 49 H 1.08990 * 113.75832 * 220.99495 * 28 15 14 50 50 H 1.09003 * 113.85612 * 89.63667 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2178 1.7712 -1.4426 6 6 3.3589 1.2633 0.7213 7 6 3.1382 0.9186 2.1955 8 6 4.4666 0.8765 2.9059 9 8 5.4892 1.0998 2.2932 10 7 4.5187 0.5848 4.2207 11 6 5.8106 0.5380 4.9099 12 6 5.5904 0.1884 6.3830 13 8 4.8230 -1.0034 6.5639 14 6 5.1064 1.3751 7.2358 15 7 6.0526 0.8929 8.2660 16 6 6.7785 2.0129 8.8797 17 6 5.8357 2.8086 9.7451 18 8 4.6735 2.4752 9.8416 19 7 6.2839 3.8907 10.4119 20 6 5.4264 4.6143 11.1996 21 1 4.3916 4.3175 11.2855 22 6 5.8886 5.7296 11.8875 23 7 7.1479 6.0905 11.7834 24 14 4.7200 6.7160 12.9603 25 1 4.7329 6.1678 14.3403 26 1 5.1526 8.1363 12.9877 27 1 3.3453 6.6280 12.4056 28 6 6.8757 0.2321 7.2291 29 1 -0.3632 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.8830 1.0772 -1.9563 33 1 1.2570 1.8012 -1.9564 34 1 2.6615 2.7668 -1.4426 35 1 3.8427 2.2370 0.6443 36 1 3.9931 0.5052 0.2619 37 1 2.6544 -0.0552 2.2725 38 1 2.5040 1.6767 2.6549 39 1 3.7009 0.4059 4.7106 40 1 6.4423 -0.2200 4.4468 41 1 6.2971 1.5107 4.8365 42 1 4.0002 -1.0222 6.0562 43 1 5.3673 2.3489 6.8214 44 1 4.0601 1.3045 7.5330 45 1 7.5939 1.6261 9.4909 46 1 7.1837 2.6552 8.0977 47 1 7.2133 4.1576 10.3345 48 1 7.4705 6.8693 12.2633 49 1 7.2429 -0.7517 7.5210 50 1 7.6547 0.8702 6.8117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500821544.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:35 Heat of formation + Delta-G solvation = -167.228963 kcal Electronic energy + Delta-G solvation = -29790.049094 eV Core-core repulsion = 25431.264759 eV Total energy + Delta-G solvation = -4358.784335 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81814 -40.68983 -39.73737 -39.20599 -36.95749 -35.90447 -35.33491 -34.68955 -33.31631 -31.83735 -31.06792 -28.73315 -27.52122 -27.27092 -26.80580 -25.29787 -23.67442 -22.05718 -21.47071 -21.03590 -20.94923 -19.90429 -18.67188 -17.90832 -17.81459 -17.59003 -17.07629 -16.73276 -16.67067 -16.56117 -16.28764 -15.91196 -15.87833 -15.65358 -15.35653 -15.18452 -14.72741 -14.55642 -14.18724 -14.15029 -13.88750 -13.69380 -13.47364 -13.40541 -13.28145 -13.19031 -12.97194 -12.94030 -12.49682 -12.43386 -12.42270 -12.22238 -12.13788 -12.05467 -11.81708 -11.53201 -11.51690 -10.98180 -10.94683 -10.51113 -10.35902 -10.21026 -10.03218 -9.69152 -8.48054 -5.96888 1.36766 1.40615 1.53214 1.61924 2.02779 2.06002 2.27409 2.67176 2.89907 2.92864 3.18503 3.24785 3.33199 3.56131 3.72183 3.81896 4.00875 4.12444 4.19582 4.22891 4.27854 4.36384 4.40779 4.45244 4.51170 4.55047 4.55645 4.61172 4.64469 4.66609 4.74771 4.78588 4.80680 4.92348 4.97001 4.99425 5.06647 5.20637 5.28627 5.35114 5.37038 5.40082 5.84234 6.03765 6.33604 6.42888 6.58318 6.68502 7.10975 7.19286 7.53967 8.09528 8.69293 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.001857 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.027064 B =15075.605170 C =16166.323138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.084 3.916 4 H 0.078 0.922 5 C -0.175 4.175 6 C -0.099 4.099 7 C -0.132 4.132 8 C 0.513 3.487 9 O -0.583 6.583 10 N -0.722 5.722 11 C 0.110 3.890 12 C 0.113 3.887 13 O -0.535 6.535 14 C -0.004 4.004 15 N -0.474 5.474 16 C 0.020 3.980 17 C 0.440 3.560 18 O -0.618 6.618 19 N -0.573 5.573 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.020 3.980 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.412 0.588 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.389 0.611 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.081 0.919 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.106 0.894 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 -10.251 -23.973 27.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C 0.027 3.973 4 H 0.096 0.904 5 C -0.232 4.232 6 C -0.137 4.137 7 C -0.171 4.171 8 C 0.301 3.699 9 O -0.463 6.463 10 N -0.375 5.375 11 C -0.015 4.015 12 C 0.070 3.930 13 O -0.342 6.342 14 C -0.134 4.134 15 N -0.197 5.197 16 C -0.112 4.112 17 C 0.227 3.773 18 O -0.504 6.504 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.109 4.109 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.249 0.751 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.239 0.761 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.127 0.873 46 H 0.098 0.902 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.124 0.876 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.491 -10.838 -23.267 26.738 hybrid contribution -0.475 1.591 0.068 1.661 sum -7.966 -9.247 -23.199 26.214 Atomic orbital electron populations 1.22940 0.79964 1.03549 1.00763 1.87908 1.20948 1.28440 1.95225 1.22210 0.94359 0.84738 0.95999 0.90422 1.22271 1.02531 1.01977 0.96453 1.21411 0.96095 1.02809 0.93396 1.21671 0.93516 1.06261 0.95695 1.21274 0.92224 0.74716 0.81643 1.90700 1.38093 1.50697 1.66797 1.45867 1.09951 1.71906 1.09820 1.21839 0.86638 1.02685 0.90316 1.22711 0.93666 0.85216 0.91366 1.86603 1.38157 1.37395 1.72068 1.24496 0.99727 0.97351 0.91791 1.68451 1.10394 1.19831 1.21062 1.22404 0.96250 0.93544 0.98994 1.20711 0.89365 0.82715 0.84465 1.90486 1.20437 1.71106 1.68374 1.41942 1.12460 1.24834 1.41845 1.19647 0.94144 1.08352 1.24120 0.90361 1.26048 0.98234 0.97993 0.99051 1.69667 1.15205 1.27599 1.43595 0.84926 0.77872 0.77389 0.78137 1.19730 1.19489 1.19703 1.24249 0.94434 1.02152 0.90027 0.93568 0.89002 0.92897 0.92707 0.91749 0.90743 0.90340 0.92288 0.86799 0.86685 0.75063 0.90196 0.90617 0.76118 0.90885 0.90592 0.87280 0.90153 0.77016 0.91289 0.87591 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.82 113.37 1.23 1.43 16 2 O -0.41 -5.74 9.88 -148.98 -1.47 -7.21 16 3 C 0.08 1.00 2.72 30.60 0.08 1.09 16 4 H 0.08 0.68 7.79 -2.39 -0.02 0.66 16 5 C -0.17 -1.94 9.53 71.98 0.69 -1.26 16 6 C -0.10 -1.46 4.21 30.59 0.13 -1.33 16 7 C -0.13 -1.63 5.60 29.85 0.17 -1.46 16 8 C 0.51 9.69 7.83 87.66 0.69 10.38 16 9 O -0.58 -16.13 15.98 -3.04 -0.05 -16.18 16 10 N -0.72 -11.15 5.34 -463.07 -2.47 -13.62 16 11 C 0.11 2.03 5.28 86.38 0.46 2.49 16 12 C 0.11 2.41 1.52 -10.14 -0.02 2.40 16 13 O -0.54 -11.55 13.50 -148.98 -2.01 -13.56 16 14 C 0.00 -0.13 6.16 86.41 0.53 0.41 16 15 N -0.47 -15.39 5.95 -915.23 -5.44 -20.83 16 16 C 0.02 0.68 5.31 85.56 0.45 1.13 16 17 C 0.44 21.06 7.59 87.66 0.67 21.72 16 18 O -0.62 -34.31 15.13 -3.07 -0.05 -34.36 16 19 N -0.57 -29.51 5.29 -306.99 -1.62 -31.13 16 20 C -0.33 -18.95 9.68 84.04 0.81 -18.13 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 23 N -0.92 -49.60 13.05 21.66 0.28 -49.32 16 24 Si 0.99 42.87 29.55 68.60 2.03 44.89 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 C 0.02 0.45 7.37 86.41 0.64 1.09 16 29 H 0.05 0.33 7.87 -2.39 -0.02 0.31 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.34 8.08 -2.39 -0.02 0.32 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.61 7.87 -2.39 -0.02 0.59 16 34 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 36 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.11 1.16 7.82 -2.38 -0.02 1.14 16 38 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.41 4.19 7.31 -92.71 -0.68 3.51 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.52 8.04 -2.39 -0.02 1.50 16 42 H 0.39 5.11 7.61 -74.06 -0.56 4.54 16 43 H 0.07 2.09 7.67 -2.39 -0.02 2.07 16 44 H 0.08 2.52 8.09 -2.38 -0.02 2.50 16 45 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 46 H 0.08 2.35 7.69 -2.39 -0.02 2.33 16 47 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 48 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 49 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.11 1.93 7.75 -2.39 -0.02 1.91 16 Total: -1.00 -78.51 414.25 -4.82 -83.33 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: -1.01 Total: 38.29 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 6.99 Total: 19.69 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -9.25 Total: -114.90 kcal Atomic # 8 Polarization: -67.73 SS G_CDS: -3.58 Total: -71.31 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -78.51 -4.82 -83.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500821544.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.895 kcal (2) G-P(sol) polarization free energy of solvation -78.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds