Wall clock time and date at job start Wed Apr 1 2020 02:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00508 * 2 1 4 4 H 1.09001 * 109.46575 * 330.00582 * 3 2 1 5 5 C 1.52997 * 109.46684 * 90.00033 * 3 2 1 6 6 C 1.52992 * 109.47296 * 210.00271 * 3 2 1 7 7 C 1.52997 * 109.47482 * 65.00043 * 6 3 2 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 3 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46983 * 180.02562 * 11 10 8 13 13 O 1.42901 * 112.94034 * 53.43399 * 12 11 10 14 14 C 1.53941 * 113.73325 * 281.72977 * 12 11 10 15 15 N 1.47959 * 86.17849 * 221.92020 * 14 12 11 16 16 C 1.46905 * 111.00056 * 137.58648 * 15 14 12 17 17 C 1.50694 * 109.47357 * 70.63772 * 16 15 14 18 18 O 1.21291 * 119.99977 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99896 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99903 * 179.97438 * 19 17 16 21 21 H 1.08007 * 120.00080 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00042 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99932 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99905 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47185 * 89.99997 * 24 22 20 26 26 H 1.48504 * 109.47016 * 209.99766 * 24 22 20 27 27 H 1.48503 * 109.47053 * 329.99709 * 24 22 20 28 28 C 1.47959 * 90.76570 * 24.68753 * 15 14 12 29 29 H 1.08999 * 109.47395 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47218 * 300.00062 * 1 2 3 31 31 H 1.09008 * 109.47047 * 59.99707 * 1 2 3 32 32 H 1.09000 * 109.47346 * 60.00146 * 5 3 2 33 33 H 1.09007 * 109.46964 * 180.02562 * 5 3 2 34 34 H 1.09004 * 109.47224 * 300.00168 * 5 3 2 35 35 H 1.09002 * 109.47103 * 304.99796 * 6 3 2 36 36 H 1.08998 * 109.46862 * 185.00608 * 6 3 2 37 37 H 1.09002 * 109.47153 * 59.99783 * 7 6 3 38 38 H 1.09001 * 109.46832 * 299.99974 * 7 6 3 39 39 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 40 40 H 1.09001 * 109.47487 * 300.00114 * 11 10 8 41 41 H 1.09002 * 109.47182 * 60.00342 * 11 10 8 42 42 H 0.96700 * 114.00153 * 309.66938 * 13 12 11 43 43 H 1.08998 * 113.75706 * 336.23441 * 14 12 11 44 44 H 1.09000 * 113.75818 * 107.60231 * 14 12 11 45 45 H 1.08999 * 109.46864 * 190.64034 * 16 15 14 46 46 H 1.09004 * 109.46613 * 310.63688 * 16 15 14 47 47 H 0.96997 * 120.00116 * 359.97438 * 19 17 16 48 48 H 0.97005 * 119.99866 * 180.02562 * 23 22 20 49 49 H 1.09006 * 113.75978 * 220.99046 * 28 15 14 50 50 H 1.09002 * 113.75385 * 89.63184 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2178 1.7712 1.4425 6 6 3.3589 1.2632 -0.7213 7 6 3.1383 0.9184 -2.1955 8 6 4.4667 0.8774 -2.9060 9 8 5.4892 1.1014 -2.2934 10 7 4.5184 0.5908 -4.2220 11 6 5.8098 0.5504 -4.9125 12 6 5.5892 0.2058 -6.3868 13 8 4.6466 1.0692 -7.0256 14 6 5.3339 -1.2908 -6.6417 15 7 6.2264 -1.1421 -7.8124 16 6 7.1450 -2.2832 -7.9224 17 6 6.3747 -3.5102 -8.3372 18 8 5.1780 -3.4410 -8.5226 19 7 7.0152 -4.6846 -8.5012 20 6 6.3143 -5.8009 -8.8781 21 1 5.2487 -5.7393 -9.0432 22 6 6.9748 -7.0116 -9.0478 23 7 6.3028 -8.0817 -9.4086 24 14 8.8176 -7.1182 -8.7616 25 1 9.0789 -7.4589 -7.3400 26 1 9.3944 -8.1702 -9.6368 27 1 9.4446 -5.8104 -9.0806 28 6 6.8942 0.0174 -7.1810 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.8830 1.0772 1.9563 33 1 2.6608 2.7672 1.4426 34 1 1.2569 1.8013 1.9564 35 1 3.9931 0.5050 -0.2618 36 1 3.8427 2.2368 -0.6442 37 1 2.5041 1.6766 -2.6550 38 1 2.6545 -0.0553 -2.2724 39 1 3.7007 0.4113 -4.7117 40 1 6.2935 1.5242 -4.8359 41 1 6.4441 -0.2075 -4.4528 42 1 3.8138 1.1674 -6.5441 43 1 5.7333 -1.9429 -5.8650 44 1 4.3013 -1.5218 -6.9032 45 1 7.9088 -2.0642 -8.6685 46 1 7.6201 -2.4614 -6.9576 47 1 7.9722 -4.7400 -8.3527 48 1 6.7639 -8.9270 -9.5267 49 1 7.1083 0.8316 -7.8735 50 1 7.7501 -0.2522 -6.5622 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500821545.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:40 Heat of formation + Delta-G solvation = -127.598971 kcal Electronic energy + Delta-G solvation = -29883.355606 eV Core-core repulsion = 25526.289757 eV Total energy + Delta-G solvation = -4357.065849 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.82733 -39.82660 -38.70124 -38.11174 -35.93237 -34.53426 -34.10892 -33.94587 -31.71075 -31.05299 -30.19205 -27.74672 -27.06255 -26.24518 -25.21395 -24.32200 -22.40728 -21.49799 -20.73756 -20.04859 -19.37816 -18.37818 -17.84365 -17.30768 -16.79842 -16.49201 -15.90648 -15.80265 -15.64088 -15.51825 -15.26985 -15.19946 -14.84970 -14.48062 -14.12346 -13.85768 -13.60927 -13.53272 -13.19072 -13.13517 -13.02575 -12.87645 -12.66660 -12.47917 -12.28808 -12.14036 -11.95896 -11.80651 -11.75027 -11.50598 -11.42058 -11.14632 -11.02167 -10.84024 -10.60754 -10.18398 -10.03105 -9.99335 -9.97308 -9.57920 -9.43674 -8.77721 -8.37628 -8.19087 -6.32334 -3.83799 2.36523 2.76879 3.01876 3.05684 3.14249 3.36447 3.60279 3.71528 3.91953 4.09152 4.15255 4.30233 4.36028 4.47775 4.58308 4.62593 4.76212 4.82399 4.92167 4.93333 5.00020 5.08652 5.17707 5.18832 5.21367 5.25231 5.31463 5.37334 5.42678 5.46584 5.51217 5.56898 5.63005 5.64538 5.72582 5.74861 5.86965 5.90422 6.02235 6.06729 6.46331 6.79874 7.00253 7.10036 7.37564 7.56376 7.90579 8.12282 8.58309 8.93523 9.40776 9.81051 10.80722 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.001979 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.838053 B =14148.554153 C =15332.031918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.140 4.140 8 C 0.516 3.484 9 O -0.540 6.540 10 N -0.731 5.731 11 C 0.101 3.899 12 C 0.088 3.912 13 O -0.521 6.521 14 C -0.002 4.002 15 N -0.440 5.440 16 C 0.004 3.996 17 C 0.452 3.548 18 O -0.560 6.560 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.018 3.982 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.399 0.601 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.372 0.628 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.056 0.944 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.101 0.899 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 22.042 18.219 29.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.025 3.975 4 H 0.079 0.921 5 C -0.233 4.233 6 C -0.139 4.139 7 C -0.180 4.180 8 C 0.303 3.697 9 O -0.416 6.416 10 N -0.385 5.385 11 C -0.024 4.024 12 C 0.046 3.954 13 O -0.326 6.326 14 C -0.131 4.131 15 N -0.163 5.163 16 C -0.128 4.128 17 C 0.238 3.762 18 O -0.442 6.442 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.112 4.112 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.234 0.766 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.219 0.781 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.112 0.888 46 H 0.074 0.926 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.119 0.881 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.371 21.928 17.353 28.475 hybrid contribution 0.907 -0.526 1.022 1.464 sum -4.464 21.402 18.375 28.559 Atomic orbital electron populations 1.22795 0.81154 1.02901 0.99828 1.87960 1.19538 1.27710 1.95067 1.22198 0.94788 0.84749 0.95733 0.92082 1.22271 1.02367 1.01870 0.96746 1.21460 0.95760 1.03796 0.92858 1.21664 0.94925 1.04945 0.96470 1.20755 0.91741 0.75717 0.81532 1.90714 1.36447 1.48655 1.65822 1.45941 1.09818 1.72656 1.10060 1.22014 0.86079 1.03179 0.91091 1.23036 0.92311 0.90635 0.89466 1.86634 1.28165 1.67147 1.50623 1.24550 1.01830 0.94104 0.92598 1.68479 1.11466 1.02575 1.33744 1.22554 0.96294 0.92595 1.01355 1.19548 0.88438 0.83639 0.84586 1.90562 1.14612 1.84632 1.54365 1.42214 1.09174 1.08973 1.62671 1.19420 0.96087 0.84799 1.43014 0.86299 1.25043 0.98443 0.95214 0.97494 1.69624 1.36108 1.00186 1.46168 0.86671 0.85162 0.78485 0.79075 1.19649 1.20127 1.19480 1.24127 0.93826 0.96404 0.96817 0.89552 0.94211 0.93992 0.91541 0.91462 0.92495 0.90092 0.89834 0.89032 0.87914 0.76591 0.90350 0.90180 0.78091 0.90739 0.88094 0.88778 0.92622 0.79719 0.91603 0.88061 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.13 9.88 -35.23 -0.35 -3.48 16 3 C 0.08 0.54 2.72 -26.74 -0.07 0.47 16 4 H 0.06 0.31 7.79 -51.93 -0.40 -0.10 16 5 C -0.18 -1.02 9.53 37.16 0.35 -0.67 16 6 C -0.10 -0.76 4.21 -26.74 -0.11 -0.87 16 7 C -0.14 -0.95 5.60 -27.88 -0.16 -1.11 16 8 C 0.52 5.01 7.83 -10.98 -0.09 4.92 16 9 O -0.54 -7.37 15.98 5.56 0.09 -7.28 16 10 N -0.73 -5.98 5.34 -60.30 -0.32 -6.30 16 11 C 0.10 0.97 5.28 -4.04 -0.02 0.94 16 12 C 0.09 0.96 1.52 -89.69 -0.14 0.83 16 13 O -0.52 -5.79 13.50 -35.23 -0.48 -6.27 16 14 C 0.00 -0.02 6.16 -2.76 -0.02 -0.04 16 15 N -0.44 -7.05 5.95 -239.63 -1.43 -8.47 16 16 C 0.00 0.07 5.31 -4.98 -0.03 0.04 16 17 C 0.45 10.33 7.59 -10.99 -0.08 10.24 16 18 O -0.56 -15.04 15.12 5.55 0.08 -14.95 16 19 N -0.59 -14.13 5.09 -10.96 -0.06 -14.18 16 20 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 21 H 0.12 3.85 7.39 -52.48 -0.39 3.47 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 24 Si 0.88 19.42 27.74 -169.99 -4.71 14.71 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 28 C 0.02 0.21 7.38 -2.77 -0.02 0.19 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.18 7.87 -51.93 -0.41 -0.23 16 31 H 0.04 0.18 8.09 -51.92 -0.42 -0.23 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 35 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.69 7.82 -51.93 -0.41 0.28 16 39 H 0.40 2.30 7.31 -40.82 -0.30 2.00 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 42 H 0.37 2.61 7.61 45.56 0.35 2.95 16 43 H 0.07 1.04 7.67 -51.93 -0.40 0.65 16 44 H 0.10 1.62 8.09 -51.93 -0.42 1.20 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 46 H 0.06 0.79 7.69 -51.93 -0.40 0.39 16 47 H 0.37 7.76 5.76 -40.82 -0.24 7.53 16 48 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.08 0.79 7.75 -51.93 -0.40 0.39 16 LS Contribution 411.13 15.07 6.20 6.20 Total: -1.00 -37.30 411.13 -7.36 -44.66 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -7.63 Total: 11.94 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 0.47 Total: 8.44 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -1.03 Total: -53.96 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.65 Total: -31.98 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.30 -7.36 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500821545.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.943 kcal (2) G-P(sol) polarization free energy of solvation -37.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds