Wall clock time and date at job start Wed Apr 1 2020 02:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00134 * 2 1 4 4 H 1.09004 * 109.47150 * 30.00489 * 3 2 1 5 5 C 1.52999 * 109.47653 * 270.00544 * 3 2 1 6 6 C 1.52998 * 109.47158 * 150.00276 * 3 2 1 7 7 C 1.50706 * 109.47348 * 295.00235 * 6 3 2 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 6 3 9 9 N 1.34773 * 120.00081 * 179.72561 * 7 6 3 10 10 C 1.47152 * 120.98449 * 359.97438 * 9 7 6 11 11 C 1.53289 * 108.38684 * 230.51629 * 10 9 7 12 12 O 1.42967 * 109.22233 * 307.69958 * 11 10 9 13 13 C 1.42957 * 114.16465 * 62.58265 * 12 11 10 14 14 H 1.08996 * 109.51762 * 57.39497 * 13 12 11 15 15 C 1.53007 * 109.51034 * 177.49383 * 13 12 11 16 16 N 1.46898 * 109.47136 * 300.00362 * 15 13 12 17 17 C 1.46894 * 111.00218 * 180.02562 * 16 15 13 18 18 C 1.50694 * 109.47774 * 179.97438 * 17 16 15 19 19 O 1.21298 * 119.99364 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00624 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00287 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00340 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00292 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99635 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00013 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46937 * 90.00262 * 25 23 21 27 27 H 1.48498 * 109.46747 * 210.00048 * 25 23 21 28 28 H 1.48499 * 109.47153 * 329.99723 * 25 23 21 29 29 C 1.47156 * 120.97855 * 179.71940 * 9 7 6 30 30 H 1.09000 * 109.47450 * 59.99358 * 1 2 3 31 31 H 1.08998 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46780 * 299.99561 * 1 2 3 33 33 H 1.09004 * 109.46798 * 300.00161 * 5 3 2 34 34 H 1.08995 * 109.47105 * 59.99412 * 5 3 2 35 35 H 1.08998 * 109.47635 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47671 * 175.00444 * 6 3 2 37 37 H 1.08998 * 109.47454 * 55.00441 * 6 3 2 38 38 H 1.08999 * 109.68084 * 350.24611 * 10 9 7 39 39 H 1.09002 * 109.67665 * 110.79252 * 10 9 7 40 40 H 1.08998 * 109.51493 * 67.62582 * 11 10 9 41 41 H 1.08997 * 109.51181 * 187.77452 * 11 10 9 42 42 H 1.09004 * 109.46495 * 60.00082 * 15 13 12 43 43 H 1.08990 * 109.47109 * 179.97438 * 15 13 12 44 44 H 1.00899 * 110.99775 * 303.95024 * 16 15 13 45 45 H 1.09004 * 109.46899 * 299.99962 * 17 16 15 46 46 H 1.09006 * 109.47163 * 59.98907 * 17 16 15 47 47 H 0.97001 * 119.99411 * 0.02562 * 20 18 17 48 48 H 0.96991 * 119.99472 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.68056 * 249.20870 * 29 9 7 50 50 H 1.08997 * 109.68073 * 9.76056 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7715 -1.4424 6 6 3.3590 1.2632 0.7212 7 6 3.1418 0.9234 2.1733 8 8 2.0187 0.7342 2.5903 9 7 4.1959 0.8249 3.0073 10 6 5.5680 1.0442 2.5231 11 6 6.4341 -0.1381 2.9725 12 8 6.2803 -0.3254 4.3815 13 6 4.9506 -0.6603 4.7857 14 1 4.6300 -1.5650 4.2692 15 6 4.9202 -0.8967 6.2971 16 7 5.8279 -2.0001 6.6385 17 6 5.8242 -2.2565 8.0848 18 6 6.7642 -3.3925 8.3962 19 8 7.3773 -3.9348 7.5010 20 7 6.9244 -3.8051 9.6691 21 6 7.7792 -4.8389 9.9522 22 1 8.3245 -5.3225 9.1552 23 6 7.9440 -5.2647 11.2646 24 7 7.2801 -4.6767 12.2344 25 14 9.1092 -6.6729 11.6503 26 1 10.4667 -6.1331 11.9170 27 1 8.6229 -7.4037 12.8480 28 1 9.1642 -7.6012 10.4925 29 6 4.0081 0.5004 4.4303 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.8829 1.0776 -1.9564 34 1 1.2568 1.8015 -1.9562 35 1 2.6614 2.7670 -1.4424 36 1 3.8428 2.2369 0.6444 37 1 3.9932 0.5051 0.2616 38 1 5.5678 1.1064 1.4348 39 1 5.9624 1.9691 2.9440 40 1 6.1186 -1.0404 2.4487 41 1 7.4796 0.0692 2.7447 42 1 5.2392 0.0090 6.8129 43 1 3.9061 -1.1515 6.6046 44 1 5.5922 -2.8348 6.1230 45 1 6.1492 -1.3603 8.6135 46 1 4.8163 -2.5213 8.4044 47 1 6.4344 -3.3711 10.3849 48 1 7.3948 -4.9742 13.1504 49 1 4.2479 1.3714 5.0402 50 1 2.9745 0.2022 4.6055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502043844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:54 Heat of formation + Delta-G solvation = -153.828178 kcal Electronic energy + Delta-G solvation = -30032.932751 eV Core-core repulsion = 25674.729518 eV Total energy + Delta-G solvation = -4358.203233 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.71916 -39.08023 -38.22230 -37.89304 -35.62112 -34.81498 -33.82090 -33.33044 -31.93853 -31.14749 -29.08584 -28.53592 -27.06438 -26.58682 -24.99350 -23.77844 -23.06416 -21.95532 -21.27803 -19.45126 -19.18810 -17.86165 -17.61966 -17.25477 -17.04018 -16.40271 -16.06597 -15.77002 -15.51534 -15.23295 -15.14243 -15.04366 -14.71357 -14.41746 -14.15218 -13.97321 -13.76072 -13.42132 -13.30866 -13.26844 -13.00867 -12.75410 -12.59329 -12.43502 -12.35936 -11.98541 -11.83823 -11.75133 -11.48896 -11.46152 -11.35235 -11.11177 -11.00276 -10.79085 -10.36425 -10.24892 -10.18002 -10.04029 -9.91420 -9.46818 -8.81591 -8.40400 -7.98381 -7.90882 -6.37836 -3.78385 2.32368 2.51823 3.20935 3.29088 3.35194 3.43036 3.57110 3.95870 4.01869 4.09319 4.28112 4.29590 4.53845 4.59466 4.70063 4.76695 4.78522 4.89703 4.94455 5.01022 5.01469 5.05309 5.09011 5.18200 5.21262 5.22257 5.28707 5.34697 5.37297 5.45874 5.47338 5.48760 5.55888 5.61519 5.69299 5.84665 5.87270 6.03106 6.04668 6.31210 6.88246 7.00928 7.05440 7.26535 7.59069 7.70858 7.84860 8.10723 8.66018 9.22170 9.58945 10.10868 10.80049 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.001642 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.010286 B =17049.873704 C =17343.616276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.100 3.900 4 H 0.068 0.932 5 C -0.175 4.175 6 C -0.140 4.140 7 C 0.520 3.480 8 O -0.532 6.532 9 N -0.618 5.618 10 C 0.071 3.929 11 C 0.045 3.955 12 O -0.349 6.349 13 C 0.084 3.916 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.658 5.658 17 C 0.051 3.949 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.085 3.915 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.348 0.652 45 H 0.087 0.913 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.078 0.922 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.102 17.367 -24.101 31.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.041 3.959 4 H 0.086 0.914 5 C -0.233 4.233 6 C -0.179 4.179 7 C 0.308 3.692 8 O -0.408 6.408 9 N -0.353 5.353 10 C -0.052 4.052 11 C -0.033 4.033 12 O -0.267 6.267 13 C 0.024 3.976 14 H 0.080 0.920 15 C -0.062 4.062 16 N -0.290 5.290 17 C -0.082 4.082 18 C 0.228 3.772 19 O -0.465 6.465 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.195 1.195 29 C -0.039 4.039 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.167 0.833 45 H 0.105 0.895 46 H 0.060 0.940 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.096 0.904 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.480 17.098 -24.119 31.367 hybrid contribution -0.875 -0.563 0.646 1.225 sum -11.355 16.535 -23.473 30.876 Atomic orbital electron populations 1.22706 0.80870 1.02595 0.99701 1.87894 1.19926 1.26819 1.94946 1.21787 0.93423 0.85998 0.94691 0.91410 1.22303 1.02740 1.01648 0.96588 1.21890 0.99325 1.04343 0.92392 1.20567 0.84198 0.76510 0.87902 1.90692 1.22965 1.49478 1.77621 1.48159 1.06676 1.70758 1.09718 1.22540 0.81956 1.00202 1.00543 1.22954 1.00499 0.96333 0.83529 1.88192 1.27361 1.90113 1.21003 1.22545 0.83233 0.95754 0.96024 0.91962 1.21914 0.94893 0.96855 0.92569 1.59959 1.53548 1.09978 1.05561 1.21682 0.98014 0.99138 0.89349 1.19804 0.86913 0.86734 0.83795 1.90527 1.50829 1.59324 1.45864 1.41856 1.40127 1.31886 1.06314 1.19710 1.19836 1.09735 0.93531 0.87937 1.25258 0.98342 0.99178 0.95214 1.69616 1.42095 1.42173 1.00526 0.85853 0.79839 0.80600 0.77956 1.20409 1.20982 1.19461 1.22358 1.01855 0.98711 0.80932 0.94615 0.89909 0.93563 0.91565 0.92076 0.91459 0.87619 0.87877 0.88928 0.90232 0.92695 0.87467 0.90011 0.93771 0.83277 0.89508 0.93950 0.77470 0.91930 0.90423 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.82 101.05 1.09 1.40 16 2 O -0.38 -3.87 9.58 -49.64 -0.48 -4.35 16 3 C 0.10 0.76 2.27 -26.73 -0.06 0.70 16 4 H 0.07 0.55 7.60 -51.93 -0.39 0.16 16 5 C -0.18 -0.90 9.53 37.16 0.35 -0.54 16 6 C -0.14 -0.93 3.79 -27.88 -0.11 -1.04 16 7 C 0.52 5.34 7.59 -10.98 -0.08 5.26 16 8 O -0.53 -7.36 14.89 -8.85 -0.13 -7.49 16 9 N -0.62 -5.79 3.01 -172.04 -0.52 -6.31 16 10 C 0.07 0.48 6.54 -3.54 -0.02 0.45 16 11 C 0.04 0.40 6.98 37.31 0.26 0.66 16 12 O -0.35 -4.50 10.25 -35.23 -0.36 -4.86 16 13 C 0.08 0.99 3.00 -26.37 -0.08 0.91 16 14 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 15 C 0.07 0.86 5.38 -3.82 -0.02 0.84 16 16 N -0.66 -11.17 5.99 -115.06 -0.69 -11.86 16 17 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 18 C 0.44 10.73 7.82 -10.99 -0.09 10.64 16 19 O -0.58 -16.25 15.78 5.54 0.09 -16.16 16 20 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 21 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 22 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 23 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 24 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 25 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 29 C 0.08 0.87 5.95 -3.33 -0.02 0.85 16 30 H 0.04 0.22 7.87 -51.93 -0.41 -0.19 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.11 0.41 8.03 -51.93 -0.42 -0.01 16 37 H 0.10 0.60 7.64 -51.93 -0.40 0.20 16 38 H 0.09 0.37 6.05 -51.93 -0.31 0.05 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.35 6.12 8.43 -39.29 -0.33 5.79 16 45 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 46 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.10 1.12 7.08 -51.93 -0.37 0.75 16 LS Contribution 409.45 15.07 6.17 6.17 Total: -1.00 -36.02 409.45 -7.68 -43.71 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -8.36 Total: 10.76 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 0.96 Total: 12.89 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.54 Total: -56.99 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.88 Total: -32.86 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.02 -7.68 -43.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502043844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.122 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds