Wall clock time and date at job start Wed Apr 1 2020 02:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00134 * 2 1 4 4 H 1.09004 * 109.47150 * 30.00489 * 3 2 1 5 5 C 1.52999 * 109.47653 * 270.00544 * 3 2 1 6 6 C 1.52998 * 109.47158 * 150.00276 * 3 2 1 7 7 C 1.50706 * 109.47348 * 295.00235 * 6 3 2 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 6 3 9 9 N 1.34773 * 120.00081 * 179.72561 * 7 6 3 10 10 C 1.47152 * 120.98449 * 359.97438 * 9 7 6 11 11 C 1.53289 * 108.38684 * 230.51629 * 10 9 7 12 12 O 1.42967 * 109.22233 * 307.69958 * 11 10 9 13 13 C 1.42957 * 114.16465 * 62.58265 * 12 11 10 14 14 H 1.08996 * 109.51762 * 57.39497 * 13 12 11 15 15 C 1.53007 * 109.51034 * 177.49383 * 13 12 11 16 16 N 1.46898 * 109.47136 * 300.00362 * 15 13 12 17 17 C 1.46894 * 111.00218 * 180.02562 * 16 15 13 18 18 C 1.50694 * 109.47774 * 179.97438 * 17 16 15 19 19 O 1.21298 * 119.99364 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00624 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00287 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00340 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00292 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99635 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00013 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46937 * 90.00262 * 25 23 21 27 27 H 1.48498 * 109.46747 * 210.00048 * 25 23 21 28 28 H 1.48499 * 109.47153 * 329.99723 * 25 23 21 29 29 C 1.47156 * 120.97855 * 179.71940 * 9 7 6 30 30 H 1.09000 * 109.47450 * 59.99358 * 1 2 3 31 31 H 1.08998 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46780 * 299.99561 * 1 2 3 33 33 H 1.09004 * 109.46798 * 300.00161 * 5 3 2 34 34 H 1.08995 * 109.47105 * 59.99412 * 5 3 2 35 35 H 1.08998 * 109.47635 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47671 * 175.00444 * 6 3 2 37 37 H 1.08998 * 109.47454 * 55.00441 * 6 3 2 38 38 H 1.08999 * 109.68084 * 350.24611 * 10 9 7 39 39 H 1.09002 * 109.67665 * 110.79252 * 10 9 7 40 40 H 1.08998 * 109.51493 * 67.62582 * 11 10 9 41 41 H 1.08997 * 109.51181 * 187.77452 * 11 10 9 42 42 H 1.09004 * 109.46495 * 60.00082 * 15 13 12 43 43 H 1.08990 * 109.47109 * 179.97438 * 15 13 12 44 44 H 1.00899 * 110.99775 * 303.95024 * 16 15 13 45 45 H 1.09004 * 109.46899 * 299.99962 * 17 16 15 46 46 H 1.09006 * 109.47163 * 59.98907 * 17 16 15 47 47 H 0.97001 * 119.99411 * 0.02562 * 20 18 17 48 48 H 0.96991 * 119.99472 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.68056 * 249.20870 * 29 9 7 50 50 H 1.08997 * 109.68073 * 9.76056 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7715 -1.4424 6 6 3.3590 1.2632 0.7212 7 6 3.1418 0.9234 2.1733 8 8 2.0187 0.7342 2.5903 9 7 4.1959 0.8249 3.0073 10 6 5.5680 1.0442 2.5231 11 6 6.4341 -0.1381 2.9725 12 8 6.2803 -0.3254 4.3815 13 6 4.9506 -0.6603 4.7857 14 1 4.6300 -1.5650 4.2692 15 6 4.9202 -0.8967 6.2971 16 7 5.8279 -2.0001 6.6385 17 6 5.8242 -2.2565 8.0848 18 6 6.7642 -3.3925 8.3962 19 8 7.3773 -3.9348 7.5010 20 7 6.9244 -3.8051 9.6691 21 6 7.7792 -4.8389 9.9522 22 1 8.3245 -5.3225 9.1552 23 6 7.9440 -5.2647 11.2646 24 7 7.2801 -4.6767 12.2344 25 14 9.1092 -6.6729 11.6503 26 1 10.4667 -6.1331 11.9170 27 1 8.6229 -7.4037 12.8480 28 1 9.1642 -7.6012 10.4925 29 6 4.0081 0.5004 4.4303 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.8829 1.0776 -1.9564 34 1 1.2568 1.8015 -1.9562 35 1 2.6614 2.7670 -1.4424 36 1 3.8428 2.2369 0.6444 37 1 3.9932 0.5051 0.2616 38 1 5.5678 1.1064 1.4348 39 1 5.9624 1.9691 2.9440 40 1 6.1186 -1.0404 2.4487 41 1 7.4796 0.0692 2.7447 42 1 5.2392 0.0090 6.8129 43 1 3.9061 -1.1515 6.6046 44 1 5.5922 -2.8348 6.1230 45 1 6.1492 -1.3603 8.6135 46 1 4.8163 -2.5213 8.4044 47 1 6.4344 -3.3711 10.3849 48 1 7.3948 -4.9742 13.1504 49 1 4.2479 1.3714 5.0402 50 1 2.9745 0.2022 4.6055 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502043844.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:53 Heat of formation + Delta-G solvation = -182.368393 kcal Electronic energy + Delta-G solvation = -30034.170347 eV Core-core repulsion = 25674.729518 eV Total energy + Delta-G solvation = -4359.440830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.47806 -40.19171 -39.75645 -38.66128 -36.86946 -35.89947 -35.63779 -33.94237 -33.29985 -32.79334 -29.72952 -29.52610 -28.04879 -27.46428 -26.46371 -24.96951 -24.00438 -22.70844 -22.07910 -21.06288 -20.15193 -19.90605 -18.37072 -18.05566 -17.86160 -17.63312 -17.18327 -16.81911 -16.48987 -16.36430 -16.17369 -16.00450 -15.90538 -15.71009 -15.53225 -15.02685 -14.82841 -14.70799 -14.32499 -14.29225 -13.80457 -13.55382 -13.47987 -13.30373 -13.23492 -13.08640 -12.96913 -12.88199 -12.79018 -12.64243 -12.41424 -12.30895 -12.20135 -12.11680 -11.68651 -11.60086 -11.50629 -11.12200 -10.81311 -10.53918 -10.35283 -10.01338 -9.59052 -9.30505 -8.46378 -5.95235 1.38511 1.41950 1.54941 1.58438 1.82726 2.05438 2.29663 2.76342 2.87696 2.88454 3.20768 3.42652 3.49672 3.77075 3.83012 3.89670 3.98263 4.04798 4.16333 4.25034 4.29315 4.31934 4.37702 4.45340 4.46093 4.50725 4.54006 4.56881 4.58498 4.61652 4.67066 4.69666 4.78692 4.82071 4.86422 4.89459 4.98417 5.03814 5.29721 5.34274 5.41084 5.85968 6.07804 6.23194 6.27453 6.33520 6.39973 6.60587 7.11013 7.12809 7.56273 8.11986 8.71051 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.001642 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.010286 B =17049.873704 C =17343.616276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.405 6.405 3 C 0.092 3.908 4 H 0.056 0.944 5 C -0.168 4.168 6 C -0.134 4.134 7 C 0.512 3.488 8 O -0.576 6.576 9 N -0.619 5.619 10 C 0.075 3.925 11 C 0.037 3.963 12 O -0.378 6.378 13 C 0.091 3.909 14 H 0.048 0.952 15 C 0.070 3.930 16 N -0.675 5.675 17 C 0.066 3.934 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.090 3.910 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.032 0.968 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.142 0.858 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.340 0.660 45 H 0.106 0.894 46 H 0.068 0.932 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.088 0.912 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.678 18.829 -25.046 33.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.324 6.324 3 C 0.034 3.966 4 H 0.074 0.926 5 C -0.225 4.225 6 C -0.174 4.174 7 C 0.302 3.698 8 O -0.455 6.455 9 N -0.353 5.353 10 C -0.047 4.047 11 C -0.041 4.041 12 O -0.297 6.297 13 C 0.032 3.968 14 H 0.066 0.934 15 C -0.060 4.060 16 N -0.307 5.307 17 C -0.067 4.067 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.033 4.033 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.160 0.840 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.143 0.857 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.159 0.841 45 H 0.124 0.876 46 H 0.086 0.914 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.106 0.894 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.054 18.600 -25.063 32.790 hybrid contribution -1.003 -0.990 0.906 1.675 sum -11.057 17.610 -24.157 31.873 Atomic orbital electron populations 1.22740 0.80370 1.02882 0.99939 1.87845 1.20728 1.28661 1.95173 1.21995 0.93534 0.84781 0.96316 0.92598 1.22247 1.02946 1.02737 0.94571 1.22000 0.99333 1.06605 0.89420 1.21282 0.83614 0.75605 0.89290 1.90673 1.24749 1.51515 1.78594 1.48294 1.07752 1.70100 1.09198 1.22703 0.79876 0.99531 1.02619 1.23201 1.02135 0.97121 0.81596 1.88138 1.27752 1.90316 1.23446 1.22406 0.83446 0.95793 0.95176 0.93389 1.22002 0.94987 0.95508 0.93460 1.59956 1.55566 1.10612 1.04586 1.21544 0.97457 0.97069 0.90603 1.20878 0.86700 0.87275 0.82663 1.90493 1.52601 1.61010 1.46901 1.41920 1.40156 1.31762 1.07166 1.19680 1.21587 1.11539 0.93719 0.90388 1.26052 0.99468 1.01217 0.94514 1.69674 1.42524 1.42941 1.00931 0.84911 0.77978 0.77496 0.77833 1.19600 1.19454 1.19841 1.22190 1.00593 0.98399 0.82156 0.92692 0.89702 0.94942 0.91354 0.92231 0.89306 0.84032 0.86526 0.85548 0.88899 0.93373 0.85735 0.89186 0.91993 0.84127 0.87647 0.91408 0.76926 0.91284 0.89412 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.82 113.37 1.23 1.84 16 2 O -0.40 -8.18 9.58 -135.20 -1.30 -9.48 16 3 C 0.09 1.27 2.27 30.59 0.07 1.34 16 4 H 0.06 0.89 7.60 -2.38 -0.02 0.87 16 5 C -0.17 -1.32 9.53 71.98 0.69 -0.63 16 6 C -0.13 -1.46 3.79 29.85 0.11 -1.34 16 7 C 0.51 9.96 7.59 87.66 0.67 10.63 16 8 O -0.58 -16.16 14.89 10.74 0.16 -16.00 16 9 N -0.62 -10.68 3.01 -816.59 -2.46 -13.14 16 10 C 0.07 0.80 6.54 86.35 0.56 1.36 16 11 C 0.04 0.59 6.98 72.08 0.50 1.10 16 12 O -0.38 -9.47 10.25 -148.98 -1.53 -11.00 16 13 C 0.09 2.11 3.00 30.83 0.09 2.21 16 14 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 15 C 0.07 1.71 5.38 86.31 0.46 2.17 16 16 N -0.68 -22.69 5.99 -517.94 -3.10 -25.80 16 17 C 0.07 2.33 6.17 85.56 0.53 2.86 16 18 C 0.44 21.53 7.82 87.66 0.69 22.21 16 19 O -0.62 -35.86 15.78 -3.09 -0.05 -35.91 16 20 N -0.57 -30.12 5.29 -306.99 -1.62 -31.74 16 21 C -0.34 -19.49 9.68 84.04 0.81 -18.68 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 24 N -0.92 -50.23 13.05 21.67 0.28 -49.94 16 25 Si 0.99 43.57 29.55 68.60 2.03 45.59 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 C 0.09 1.80 5.95 86.48 0.51 2.31 16 30 H 0.05 0.66 7.87 -2.39 -0.02 0.64 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 32 H 0.03 0.60 8.09 -2.38 -0.02 0.58 16 33 H 0.07 0.52 8.14 -2.38 -0.02 0.51 16 34 H 0.06 0.49 7.87 -2.39 -0.02 0.47 16 35 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.14 0.49 8.03 -2.39 -0.02 0.47 16 37 H 0.12 0.99 7.64 -2.39 -0.02 0.97 16 38 H 0.13 0.49 6.05 -2.39 -0.01 0.48 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.34 12.18 8.43 -89.69 -0.76 11.42 16 45 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 46 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 47 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 48 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 49 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.09 1.98 7.08 -2.39 -0.02 1.97 16 Total: -1.00 -80.35 409.45 -0.73 -81.08 By element: Atomic # 1 Polarization: 39.71 SS G_CDS: -0.54 Total: 39.17 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: 7.39 Total: 27.16 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -6.91 Total: -120.63 kcal Atomic # 8 Polarization: -69.67 SS G_CDS: -2.71 Total: -72.38 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -80.35 -0.73 -81.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502043844.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.285 kcal (2) G-P(sol) polarization free energy of solvation -80.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds