Wall clock time and date at job start Wed Apr 1 2020 02:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 H 1.09001 * 109.47135 * 330.00392 * 3 2 1 5 5 C 1.52997 * 109.46751 * 90.00001 * 3 2 1 6 6 C 1.52999 * 109.47091 * 209.99733 * 3 2 1 7 7 C 1.50707 * 109.46782 * 65.00118 * 6 3 2 8 8 O 1.21278 * 119.99853 * 0.02562 * 7 6 3 9 9 N 1.34778 * 119.99757 * 179.97438 * 7 6 3 10 10 C 1.47151 * 120.98314 * 359.72414 * 9 7 6 11 11 C 1.53705 * 108.16376 * 129.42796 * 10 9 7 12 12 O 1.42967 * 109.14647 * 52.53856 * 11 10 9 13 13 C 1.42967 * 114.16662 * 297.28843 * 12 11 10 14 14 H 1.09001 * 109.51083 * 302.66099 * 13 12 11 15 15 C 1.52994 * 109.55624 * 182.52885 * 13 12 11 16 16 N 1.46899 * 109.46962 * 65.22571 * 15 13 12 17 17 C 1.46904 * 111.00170 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47321 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00052 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99872 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99885 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99980 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99834 * 179.97438 * 21 20 18 24 24 N 1.31403 * 120.00029 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99625 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47525 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47492 * 120.00088 * 25 23 21 28 28 H 1.48511 * 109.46887 * 239.99842 * 25 23 21 29 29 C 1.47155 * 120.97859 * 180.02562 * 9 7 6 30 30 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 31 31 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 32 32 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47504 * 60.00312 * 5 3 2 34 34 H 1.09004 * 109.46832 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47692 * 299.99927 * 5 3 2 36 36 H 1.08996 * 109.46985 * 184.99602 * 6 3 2 37 37 H 1.08999 * 109.47312 * 305.00636 * 6 3 2 38 38 H 1.09001 * 109.68016 * 249.21340 * 10 9 7 39 39 H 1.09000 * 109.68250 * 9.75595 * 10 9 7 40 40 H 1.08998 * 109.65952 * 292.57651 * 11 10 9 41 41 H 1.09001 * 109.44561 * 172.36711 * 11 10 9 42 42 H 1.08996 * 109.47529 * 185.22813 * 15 13 12 43 43 H 1.09001 * 109.47087 * 305.23221 * 15 13 12 44 44 H 1.00898 * 111.00158 * 56.04995 * 16 15 13 45 45 H 1.08997 * 109.47260 * 300.00459 * 17 16 15 46 46 H 1.08999 * 109.46657 * 60.00498 * 17 16 15 47 47 H 0.96993 * 120.00274 * 359.97438 * 20 18 17 48 48 H 0.97008 * 119.99974 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.68189 * 350.23738 * 29 9 7 50 50 H 1.08995 * 109.68152 * 110.75845 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3590 1.2632 -0.7212 7 6 3.1417 0.9235 -2.1733 8 8 2.0186 0.7344 -2.5903 9 7 4.1953 0.8310 -3.0087 10 6 5.5663 1.0631 -2.5274 11 6 6.4387 -0.1198 -2.9769 12 8 6.2843 -0.3076 -4.3858 13 6 4.9558 -0.6497 -4.7885 14 1 4.6405 -1.5557 -4.2710 15 6 4.9238 -0.8866 -6.2996 16 7 5.7387 -2.0640 -6.6280 17 6 5.7308 -2.3230 -8.0740 18 6 6.5748 -3.5355 -8.3717 19 8 7.1287 -4.1255 -7.4683 20 7 6.7148 -3.9636 -9.6420 21 6 7.4830 -5.0664 -9.9129 22 1 7.9756 -5.5923 -9.1083 23 6 7.6270 -5.5081 -11.2224 24 7 7.0265 -4.8692 -12.2011 25 14 8.6731 -7.0111 -11.5914 26 1 9.2360 -7.5455 -10.3253 27 1 7.8341 -8.0515 -12.2386 28 1 9.7815 -6.6308 -12.5038 29 6 4.0079 0.5012 -4.4305 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.8830 1.0774 1.9564 34 1 2.6615 2.7669 1.4425 35 1 1.2569 1.8014 1.9564 36 1 3.8427 2.2369 -0.6443 37 1 3.9931 0.5050 -0.2617 38 1 5.9524 1.9899 -2.9519 39 1 5.5672 1.1289 -1.4394 40 1 6.1287 -1.0240 -2.4530 41 1 7.4835 0.0931 -2.7505 42 1 3.8956 -1.0558 -6.6192 43 1 5.3247 -0.0127 -6.8130 44 1 5.4267 -2.8743 -6.1141 45 1 4.7081 -2.5023 -8.4054 46 1 6.1371 -1.4591 -8.6000 47 1 6.2722 -3.4916 -10.3645 48 1 7.1273 -5.1773 -13.1154 49 1 2.9763 0.1945 -4.6034 50 1 4.2394 1.3725 -5.0431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502043845.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:57 Heat of formation + Delta-G solvation = -154.192006 kcal Electronic energy + Delta-G solvation = -30029.367409 eV Core-core repulsion = 25671.148399 eV Total energy + Delta-G solvation = -4358.219010 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.72217 -39.08433 -38.22710 -37.89479 -35.62497 -34.82876 -33.82668 -33.33069 -31.94347 -31.15109 -29.07909 -28.53127 -27.06413 -26.58755 -25.00126 -23.79761 -23.05834 -21.96414 -21.28524 -19.45352 -19.19319 -17.86527 -17.61932 -17.25435 -17.05389 -16.39296 -16.08231 -15.76955 -15.51156 -15.22294 -15.16063 -15.03995 -14.72651 -14.42153 -14.14994 -13.97468 -13.76486 -13.42368 -13.31470 -13.26551 -13.00857 -12.76338 -12.59456 -12.43366 -12.36080 -11.97417 -11.84887 -11.74932 -11.50579 -11.46508 -11.36413 -11.11146 -11.02371 -10.79960 -10.31427 -10.26264 -10.18951 -10.04219 -9.91240 -9.48227 -8.81950 -8.41112 -7.99303 -7.91362 -6.38162 -3.78714 2.32469 2.51442 3.19128 3.29350 3.36958 3.43209 3.56087 3.95460 4.01641 4.08982 4.27797 4.29552 4.51774 4.59662 4.70210 4.76623 4.78484 4.89475 4.94491 5.01483 5.01807 5.04855 5.09049 5.18097 5.21325 5.22345 5.28599 5.34286 5.36653 5.45413 5.47226 5.48959 5.55265 5.60576 5.69342 5.84619 5.87121 6.02772 6.04461 6.30880 6.88414 7.00697 7.04949 7.25190 7.58989 7.69815 7.84780 8.10682 8.65640 9.21958 9.58677 10.10452 10.79769 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.001652 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.630540 B =16947.015493 C =17266.347752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.100 3.900 4 H 0.068 0.932 5 C -0.175 4.175 6 C -0.140 4.140 7 C 0.520 3.480 8 O -0.531 6.531 9 N -0.618 5.618 10 C 0.071 3.929 11 C 0.045 3.955 12 O -0.351 6.351 13 C 0.084 3.916 14 H 0.063 0.937 15 C 0.068 3.932 16 N -0.660 5.660 17 C 0.051 3.949 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.084 3.916 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.107 0.893 42 H 0.045 0.955 43 H 0.082 0.918 44 H 0.348 0.652 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.270 0.730 49 H 0.100 0.900 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.199 18.202 23.983 31.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.041 3.959 4 H 0.086 0.914 5 C -0.233 4.233 6 C -0.179 4.179 7 C 0.308 3.692 8 O -0.407 6.407 9 N -0.353 5.353 10 C -0.052 4.052 11 C -0.033 4.033 12 O -0.269 6.269 13 C 0.025 3.975 14 H 0.081 0.919 15 C -0.062 4.062 16 N -0.292 5.292 17 C -0.082 4.082 18 C 0.228 3.772 19 O -0.465 6.465 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.039 4.039 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.125 0.875 42 H 0.063 0.937 43 H 0.101 0.899 44 H 0.167 0.833 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.119 0.881 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.583 17.853 24.017 31.423 hybrid contribution -0.938 -0.516 -0.664 1.260 sum -10.521 17.337 23.353 30.929 Atomic orbital electron populations 1.22707 0.80865 1.02604 0.99698 1.87896 1.19930 1.26809 1.94946 1.21787 0.93419 0.86006 0.94689 0.91412 1.22303 1.02743 1.01643 0.96588 1.21889 0.99335 1.04332 0.92390 1.20569 0.84196 0.76506 0.87906 1.90691 1.22945 1.49437 1.77651 1.48161 1.06791 1.70610 1.09768 1.22624 0.81950 1.00088 1.00581 1.23029 1.00434 0.96354 0.83452 1.88169 1.27651 1.89963 1.21145 1.22467 0.83146 0.95805 0.96078 0.91909 1.21901 0.95793 0.95918 0.92607 1.59973 1.56351 1.06911 1.05970 1.21680 0.98433 0.98763 0.89298 1.19803 0.86439 0.87155 0.83834 1.90525 1.51518 1.59325 1.45176 1.41867 1.44786 1.27312 1.06247 1.19763 1.25033 1.04425 0.93535 0.87876 1.25255 0.98176 0.99400 0.95182 1.69622 1.43738 1.40795 1.00242 0.85800 0.79234 0.80716 0.78582 1.19233 1.20816 1.20767 1.22286 1.01826 0.98778 0.80987 0.94609 0.93570 0.89901 0.91562 0.91466 0.92073 0.87623 0.87870 0.90212 0.88916 0.92606 0.87507 0.93733 0.89911 0.83284 0.93916 0.89486 0.77470 0.91976 0.88124 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.82 101.05 1.09 1.40 16 2 O -0.38 -3.89 9.58 -49.64 -0.48 -4.36 16 3 C 0.10 0.76 2.27 -26.73 -0.06 0.70 16 4 H 0.07 0.55 7.60 -51.93 -0.39 0.16 16 5 C -0.18 -0.90 9.53 37.16 0.35 -0.54 16 6 C -0.14 -0.93 3.78 -27.88 -0.11 -1.04 16 7 C 0.52 5.35 7.59 -10.98 -0.08 5.27 16 8 O -0.53 -7.37 14.89 -8.85 -0.13 -7.50 16 9 N -0.62 -5.78 3.01 -172.00 -0.52 -6.30 16 10 C 0.07 0.47 6.57 -3.32 -0.02 0.45 16 11 C 0.05 0.40 7.00 37.52 0.26 0.66 16 12 O -0.35 -4.50 10.34 -35.23 -0.36 -4.86 16 13 C 0.08 1.00 2.96 -26.56 -0.08 0.92 16 14 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 15 C 0.07 0.87 5.36 -3.83 -0.02 0.85 16 16 N -0.66 -11.19 6.08 -115.06 -0.70 -11.89 16 17 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 18 C 0.44 10.73 7.82 -10.99 -0.09 10.64 16 19 O -0.58 -16.25 15.78 5.55 0.09 -16.16 16 20 N -0.57 -14.62 5.29 -10.96 -0.06 -14.68 16 21 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 22 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 25 Si 0.93 21.34 29.55 -169.99 -5.02 16.32 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 C 0.08 0.87 5.93 -3.51 -0.02 0.85 16 30 H 0.04 0.22 7.87 -51.93 -0.41 -0.18 16 31 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 36 H 0.11 0.40 8.00 -51.93 -0.42 -0.01 16 37 H 0.10 0.60 7.67 -51.93 -0.40 0.20 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.36 6.05 -51.93 -0.31 0.05 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.35 6.11 8.43 -39.29 -0.33 5.78 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 47 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.10 1.13 7.08 -51.93 -0.37 0.76 16 50 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 409.58 15.07 6.17 6.17 Total: -1.00 -36.07 409.58 -7.69 -43.76 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -8.37 Total: 10.74 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 0.96 Total: 12.92 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.55 Total: -57.02 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.88 Total: -32.89 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.07 -7.69 -43.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502043845.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.431 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds