Wall clock time and date at job start Wed Apr 1 2020 02:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 H 1.09001 * 109.47135 * 330.00392 * 3 2 1 5 5 C 1.52997 * 109.46751 * 90.00001 * 3 2 1 6 6 C 1.52999 * 109.47091 * 209.99733 * 3 2 1 7 7 C 1.50707 * 109.46782 * 65.00118 * 6 3 2 8 8 O 1.21278 * 119.99853 * 0.02562 * 7 6 3 9 9 N 1.34778 * 119.99757 * 179.97438 * 7 6 3 10 10 C 1.47151 * 120.98314 * 359.72414 * 9 7 6 11 11 C 1.53705 * 108.16376 * 129.42796 * 10 9 7 12 12 O 1.42967 * 109.14647 * 52.53856 * 11 10 9 13 13 C 1.42967 * 114.16662 * 297.28843 * 12 11 10 14 14 H 1.09001 * 109.51083 * 302.66099 * 13 12 11 15 15 C 1.52994 * 109.55624 * 182.52885 * 13 12 11 16 16 N 1.46899 * 109.46962 * 65.22571 * 15 13 12 17 17 C 1.46904 * 111.00170 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47321 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00052 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99872 * 180.02562 * 18 17 16 21 21 C 1.37105 * 119.99885 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99980 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99834 * 179.97438 * 21 20 18 24 24 N 1.31403 * 120.00029 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99625 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47525 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47492 * 120.00088 * 25 23 21 28 28 H 1.48511 * 109.46887 * 239.99842 * 25 23 21 29 29 C 1.47155 * 120.97859 * 180.02562 * 9 7 6 30 30 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 31 31 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 32 32 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47504 * 60.00312 * 5 3 2 34 34 H 1.09004 * 109.46832 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47692 * 299.99927 * 5 3 2 36 36 H 1.08996 * 109.46985 * 184.99602 * 6 3 2 37 37 H 1.08999 * 109.47312 * 305.00636 * 6 3 2 38 38 H 1.09001 * 109.68016 * 249.21340 * 10 9 7 39 39 H 1.09000 * 109.68250 * 9.75595 * 10 9 7 40 40 H 1.08998 * 109.65952 * 292.57651 * 11 10 9 41 41 H 1.09001 * 109.44561 * 172.36711 * 11 10 9 42 42 H 1.08996 * 109.47529 * 185.22813 * 15 13 12 43 43 H 1.09001 * 109.47087 * 305.23221 * 15 13 12 44 44 H 1.00898 * 111.00158 * 56.04995 * 16 15 13 45 45 H 1.08997 * 109.47260 * 300.00459 * 17 16 15 46 46 H 1.08999 * 109.46657 * 60.00498 * 17 16 15 47 47 H 0.96993 * 120.00274 * 359.97438 * 20 18 17 48 48 H 0.97008 * 119.99974 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.68189 * 350.23738 * 29 9 7 50 50 H 1.08995 * 109.68152 * 110.75845 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3590 1.2632 -0.7212 7 6 3.1417 0.9235 -2.1733 8 8 2.0186 0.7344 -2.5903 9 7 4.1953 0.8310 -3.0087 10 6 5.5663 1.0631 -2.5274 11 6 6.4387 -0.1198 -2.9769 12 8 6.2843 -0.3076 -4.3858 13 6 4.9558 -0.6497 -4.7885 14 1 4.6405 -1.5557 -4.2710 15 6 4.9238 -0.8866 -6.2996 16 7 5.7387 -2.0640 -6.6280 17 6 5.7308 -2.3230 -8.0740 18 6 6.5748 -3.5355 -8.3717 19 8 7.1287 -4.1255 -7.4683 20 7 6.7148 -3.9636 -9.6420 21 6 7.4830 -5.0664 -9.9129 22 1 7.9756 -5.5923 -9.1083 23 6 7.6270 -5.5081 -11.2224 24 7 7.0265 -4.8692 -12.2011 25 14 8.6731 -7.0111 -11.5914 26 1 9.2360 -7.5455 -10.3253 27 1 7.8341 -8.0515 -12.2386 28 1 9.7815 -6.6308 -12.5038 29 6 4.0079 0.5012 -4.4305 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.8830 1.0774 1.9564 34 1 2.6615 2.7669 1.4425 35 1 1.2569 1.8014 1.9564 36 1 3.8427 2.2369 -0.6443 37 1 3.9931 0.5050 -0.2617 38 1 5.9524 1.9899 -2.9519 39 1 5.5672 1.1289 -1.4394 40 1 6.1287 -1.0240 -2.4530 41 1 7.4835 0.0931 -2.7505 42 1 3.8956 -1.0558 -6.6192 43 1 5.3247 -0.0127 -6.8130 44 1 5.4267 -2.8743 -6.1141 45 1 4.7081 -2.5023 -8.4054 46 1 6.1371 -1.4591 -8.6000 47 1 6.2722 -3.4916 -10.3645 48 1 7.1273 -5.1773 -13.1154 49 1 2.9763 0.1945 -4.6034 50 1 4.2394 1.3725 -5.0431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502043845.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:56 Heat of formation + Delta-G solvation = -182.851828 kcal Electronic energy + Delta-G solvation = -30030.610192 eV Core-core repulsion = 25671.148399 eV Total energy + Delta-G solvation = -4359.461793 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.48094 -40.19792 -39.76132 -38.66263 -36.87636 -35.90367 -35.64906 -33.94492 -33.30480 -32.79740 -29.71622 -29.52716 -28.04893 -27.46534 -26.46969 -24.98710 -24.00096 -22.72259 -22.08263 -21.06763 -20.15336 -19.90985 -18.37273 -18.05774 -17.86341 -17.65435 -17.17274 -16.81926 -16.49676 -16.37229 -16.18400 -16.00891 -15.89860 -15.70542 -15.53693 -15.03771 -14.82752 -14.70400 -14.32753 -14.30546 -13.80453 -13.56319 -13.48241 -13.29227 -13.24331 -13.08992 -12.96793 -12.88580 -12.79427 -12.65312 -12.40530 -12.30965 -12.21317 -12.11230 -11.68943 -11.60772 -11.51635 -11.13493 -10.81448 -10.53979 -10.35906 -10.01628 -9.59255 -9.31735 -8.46814 -5.95651 1.36800 1.41883 1.56366 1.58535 1.82517 2.04946 2.29398 2.75583 2.87646 2.87740 3.20351 3.42574 3.49071 3.77280 3.82584 3.89591 3.97975 4.04615 4.16422 4.25339 4.29010 4.31789 4.37654 4.45154 4.46001 4.50263 4.53789 4.56493 4.58022 4.61230 4.66477 4.69562 4.78477 4.81961 4.86191 4.89371 4.98463 5.03753 5.29632 5.34200 5.41044 5.85629 6.07626 6.22155 6.27294 6.33389 6.38690 6.60181 7.10943 7.12561 7.55921 8.11566 8.70833 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024759 B = 0.001652 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.630540 B =16947.015493 C =17266.347752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.405 6.405 3 C 0.092 3.908 4 H 0.056 0.944 5 C -0.168 4.168 6 C -0.134 4.134 7 C 0.512 3.488 8 O -0.576 6.576 9 N -0.620 5.620 10 C 0.075 3.925 11 C 0.037 3.963 12 O -0.380 6.380 13 C 0.092 3.908 14 H 0.047 0.953 15 C 0.070 3.930 16 N -0.677 5.677 17 C 0.066 3.934 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.270 1.270 29 C 0.090 3.910 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.142 0.858 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.048 0.952 41 H 0.125 0.875 42 H 0.063 0.937 43 H 0.090 0.910 44 H 0.341 0.659 45 H 0.069 0.931 46 H 0.106 0.894 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.087 0.913 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.729 19.728 24.891 33.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.324 6.324 3 C 0.034 3.966 4 H 0.074 0.926 5 C -0.225 4.225 6 C -0.173 4.173 7 C 0.302 3.698 8 O -0.455 6.455 9 N -0.354 5.354 10 C -0.047 4.047 11 C -0.040 4.040 12 O -0.298 6.298 13 C 0.033 3.967 14 H 0.065 0.935 15 C -0.059 4.059 16 N -0.309 5.309 17 C -0.067 4.067 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.195 1.195 29 C -0.034 4.034 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.160 0.840 37 H 0.135 0.865 38 H 0.112 0.888 39 H 0.145 0.855 40 H 0.066 0.934 41 H 0.143 0.857 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.159 0.841 45 H 0.086 0.914 46 H 0.124 0.876 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.106 0.894 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.109 19.420 24.923 32.882 hybrid contribution -1.075 -0.962 -0.914 1.708 sum -10.184 18.458 24.008 31.950 Atomic orbital electron populations 1.22741 0.80373 1.02875 0.99941 1.87847 1.20726 1.28674 1.95174 1.21998 0.93539 0.84776 0.96325 0.92595 1.22247 1.02947 1.02743 0.94561 1.22001 0.99333 1.06609 0.89406 1.21288 0.83615 0.75599 0.89305 1.90673 1.24747 1.51493 1.78629 1.48298 1.07885 1.69942 1.09238 1.22794 0.79817 0.99442 1.02669 1.23281 1.02134 0.97103 0.81510 1.88116 1.27970 1.90150 1.23581 1.22321 0.83420 0.95781 0.95226 0.93491 1.21986 0.96171 0.94269 0.93497 1.59971 1.58125 1.07812 1.05004 1.21542 0.98413 0.96141 0.90561 1.20879 0.85854 0.88081 0.82692 1.90490 1.53234 1.61070 1.46231 1.41928 1.44903 1.27090 1.07098 1.19717 1.26949 1.06111 0.93677 0.90400 1.26047 0.98853 1.01892 0.94468 1.69678 1.43983 1.41745 1.00676 0.84855 0.77895 0.77338 0.78125 1.19879 1.19536 1.19519 1.22117 1.00512 0.98496 0.82234 0.92672 0.94950 0.89720 0.91357 0.89290 0.92234 0.83997 0.86533 0.88805 0.85540 0.93379 0.85673 0.91921 0.89125 0.84118 0.91354 0.87620 0.76918 0.91280 0.89446 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.82 113.37 1.23 1.84 16 2 O -0.40 -8.23 9.58 -135.20 -1.30 -9.53 16 3 C 0.09 1.28 2.27 30.59 0.07 1.35 16 4 H 0.06 0.89 7.60 -2.39 -0.02 0.87 16 5 C -0.17 -1.32 9.53 71.98 0.69 -0.63 16 6 C -0.13 -1.46 3.78 29.85 0.11 -1.34 16 7 C 0.51 9.98 7.59 87.66 0.67 10.65 16 8 O -0.58 -16.22 14.89 10.75 0.16 -16.06 16 9 N -0.62 -10.67 3.01 -816.47 -2.46 -13.13 16 10 C 0.07 0.79 6.57 86.49 0.57 1.35 16 11 C 0.04 0.59 7.00 72.22 0.51 1.10 16 12 O -0.38 -9.42 10.34 -148.98 -1.54 -10.96 16 13 C 0.09 2.14 2.96 30.70 0.09 2.23 16 14 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 15 C 0.07 1.72 5.36 86.30 0.46 2.18 16 16 N -0.68 -22.78 6.08 -517.95 -3.15 -25.93 16 17 C 0.07 2.33 6.17 85.56 0.53 2.86 16 18 C 0.44 21.55 7.82 87.66 0.69 22.23 16 19 O -0.62 -35.91 15.78 -3.05 -0.05 -35.96 16 20 N -0.57 -30.14 5.29 -306.98 -1.62 -31.76 16 21 C -0.33 -19.46 9.68 84.04 0.81 -18.65 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 24 N -0.92 -50.23 13.05 21.66 0.28 -49.95 16 25 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 28 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 29 C 0.09 1.79 5.93 86.37 0.51 2.31 16 30 H 0.05 0.66 7.87 -2.39 -0.02 0.64 16 31 H 0.03 0.61 8.09 -2.38 -0.02 0.59 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 35 H 0.06 0.49 7.87 -2.39 -0.02 0.47 16 36 H 0.14 0.48 8.00 -2.39 -0.02 0.46 16 37 H 0.12 0.99 7.67 -2.39 -0.02 0.97 16 38 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.13 0.47 6.05 -2.39 -0.01 0.46 16 40 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.34 12.17 8.43 -89.70 -0.76 11.42 16 45 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 47 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 48 H 0.28 14.13 8.31 -92.70 -0.77 13.36 16 49 H 0.09 1.98 7.08 -2.39 -0.02 1.97 16 50 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -80.58 409.58 -0.79 -81.37 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -0.54 Total: 39.04 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 7.39 Total: 27.23 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -6.95 Total: -120.76 kcal Atomic # 8 Polarization: -69.80 SS G_CDS: -2.72 Total: -72.52 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -80.58 -0.79 -81.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502043845.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.478 kcal (2) G-P(sol) polarization free energy of solvation -80.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds