Wall clock time and date at job start Wed Apr 1 2020 02:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00120 * 2 1 4 4 H 1.09002 * 109.46600 * 30.00109 * 3 2 1 5 5 C 1.52998 * 109.47367 * 270.00225 * 3 2 1 6 6 C 1.52995 * 109.47055 * 149.99971 * 3 2 1 7 7 C 1.50703 * 109.47485 * 295.00016 * 6 3 2 8 8 O 1.21285 * 119.99753 * 0.02562 * 7 6 3 9 9 N 1.34770 * 120.00440 * 179.97438 * 7 6 3 10 10 C 1.47151 * 120.98286 * 359.72406 * 9 7 6 11 11 C 1.53293 * 108.38543 * 129.73405 * 10 9 7 12 12 O 1.42962 * 109.22230 * 52.30787 * 11 10 9 13 13 C 1.42957 * 114.16142 * 297.41398 * 12 11 10 14 14 H 1.09004 * 109.51938 * 302.65992 * 13 12 11 15 15 C 1.53002 * 109.55235 * 182.53192 * 13 12 11 16 16 N 1.46897 * 109.47284 * 65.22874 * 15 13 12 17 17 C 1.46903 * 111.00185 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.47124 * 179.97438 * 17 16 15 19 19 O 1.21290 * 119.99940 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00066 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00005 * 180.02562 * 20 18 17 22 22 H 1.07991 * 120.00050 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99749 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00181 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00005 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46712 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46949 * 120.00031 * 25 23 21 28 28 H 1.48495 * 109.47453 * 240.00612 * 25 23 21 29 29 C 1.47156 * 120.98466 * 180.02562 * 9 7 6 30 30 H 1.08995 * 109.47263 * 299.99766 * 1 2 3 31 31 H 1.09002 * 109.47066 * 59.99796 * 1 2 3 32 32 H 1.09005 * 109.46964 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47291 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.47165 * 299.99538 * 5 3 2 35 35 H 1.08997 * 109.47417 * 59.99783 * 5 3 2 36 36 H 1.09002 * 109.47271 * 175.00664 * 6 3 2 37 37 H 1.08996 * 109.47479 * 55.00350 * 6 3 2 38 38 H 1.08998 * 109.68184 * 249.46000 * 10 9 7 39 39 H 1.09003 * 109.67897 * 10.00956 * 10 9 7 40 40 H 1.09001 * 109.51429 * 292.37701 * 11 10 9 41 41 H 1.08999 * 109.51414 * 172.22907 * 11 10 9 42 42 H 1.09001 * 109.47091 * 185.23020 * 15 13 12 43 43 H 1.08994 * 109.47161 * 305.22748 * 15 13 12 44 44 H 1.00909 * 110.99693 * 56.04666 * 16 15 13 45 45 H 1.08999 * 109.47073 * 300.00253 * 17 16 15 46 46 H 1.09004 * 109.46469 * 60.00355 * 17 16 15 47 47 H 0.97002 * 120.00152 * 0.02562 * 20 18 17 48 48 H 0.97002 * 119.99994 * 179.97438 * 24 23 21 49 49 H 1.09002 * 109.67563 * 349.98862 * 29 9 7 50 50 H 1.08998 * 109.67968 * 110.50341 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2177 1.7715 -1.4425 6 6 3.3589 1.2632 0.7212 7 6 3.1416 0.9236 2.1733 8 8 2.0186 0.7335 2.5902 9 7 4.1952 0.8300 3.0085 10 6 5.5674 1.0493 2.5244 11 6 6.2549 2.0524 3.4576 12 8 6.1224 1.6053 4.8090 13 6 4.7715 1.5296 5.2705 14 1 4.2968 2.5056 5.1695 15 6 4.7555 1.1032 6.7398 16 7 5.3823 2.1484 7.5599 17 6 5.3843 1.7728 8.9801 18 6 6.0342 2.8664 9.7880 19 8 6.4540 3.8610 9.2351 20 7 6.1490 2.7393 11.1248 21 6 6.7398 3.7344 11.8598 22 1 7.1128 4.6204 11.3677 23 6 6.8576 3.6035 13.2381 24 7 6.4032 2.5257 13.8370 25 14 7.6632 4.9591 14.2396 26 1 8.0876 6.0574 13.3347 27 1 6.6924 5.4841 15.2331 28 1 8.8495 4.4137 14.9469 29 6 4.0080 0.4991 4.4301 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.6606 2.7674 -1.4424 34 1 2.8830 1.0776 -1.9563 35 1 1.2569 1.8016 -1.9563 36 1 3.8427 2.2370 0.6444 37 1 3.9931 0.5052 0.2617 38 1 6.1144 0.1065 2.5319 39 1 5.5395 1.4500 1.5111 40 1 5.7857 3.0304 3.3500 41 1 7.3115 2.1244 3.1999 42 1 3.7253 0.9558 7.0642 43 1 5.3090 0.1712 6.8537 44 1 4.9265 3.0380 7.4221 45 1 4.3584 1.6304 9.3197 46 1 5.9421 0.8453 9.1098 47 1 5.8136 1.9437 11.5669 48 1 6.4859 2.4342 14.7992 49 1 2.9474 0.5355 4.6788 50 1 4.3976 -0.4993 4.6290 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502043847.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:04 Heat of formation + Delta-G solvation = -154.351365 kcal Electronic energy + Delta-G solvation = -29965.876242 eV Core-core repulsion = 25607.650322 eV Total energy + Delta-G solvation = -4358.225920 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.73271 -39.10063 -38.23709 -37.90517 -35.63901 -34.83607 -33.83599 -33.33724 -31.96516 -31.16006 -29.09698 -28.54710 -27.07472 -26.60267 -25.00813 -23.80192 -23.06085 -21.96726 -21.30374 -19.45191 -19.20271 -17.87601 -17.62340 -17.24973 -17.07031 -16.41110 -16.11490 -15.82702 -15.38619 -15.25960 -15.17287 -15.06653 -14.79508 -14.43667 -14.16027 -13.94714 -13.73513 -13.44901 -13.39151 -13.23117 -13.01049 -12.78191 -12.59376 -12.45051 -12.35245 -11.97924 -11.86039 -11.75428 -11.51440 -11.47357 -11.37655 -11.12970 -11.03133 -10.80875 -10.32202 -10.27281 -10.19799 -10.05378 -9.91363 -9.49063 -8.82896 -8.42162 -8.00455 -7.92269 -6.38935 -3.79562 2.32887 2.50592 3.18461 3.28714 3.36192 3.41481 3.54608 3.94541 4.00972 4.08127 4.26849 4.29689 4.51769 4.60065 4.69149 4.75528 4.77525 4.88786 4.93228 5.00653 5.02769 5.03926 5.07638 5.17139 5.20255 5.22224 5.27936 5.32949 5.36338 5.44233 5.45703 5.47729 5.55483 5.59047 5.69061 5.83704 5.86108 6.01909 6.04037 6.29941 6.86824 7.00487 7.03384 7.23838 7.58203 7.68437 7.84659 8.09812 8.64737 9.21099 9.57811 10.09510 10.78967 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.028677 B = 0.001607 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.158752 B =17414.612548 C =17791.171445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.099 3.901 4 H 0.068 0.932 5 C -0.175 4.175 6 C -0.139 4.139 7 C 0.520 3.480 8 O -0.531 6.531 9 N -0.618 5.618 10 C 0.071 3.929 11 C 0.046 3.954 12 O -0.351 6.351 13 C 0.085 3.915 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.660 5.660 17 C 0.051 3.949 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.084 3.916 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.107 0.893 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.348 0.652 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.270 0.730 49 H 0.100 0.900 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.128 -6.207 -29.365 31.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.297 6.297 3 C 0.041 3.959 4 H 0.086 0.914 5 C -0.233 4.233 6 C -0.179 4.179 7 C 0.308 3.692 8 O -0.407 6.407 9 N -0.353 5.353 10 C -0.052 4.052 11 C -0.032 4.032 12 O -0.269 6.269 13 C 0.025 3.975 14 H 0.080 0.920 15 C -0.063 4.063 16 N -0.292 5.292 17 C -0.082 4.082 18 C 0.228 3.772 19 O -0.466 6.466 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.039 4.039 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.125 0.875 42 H 0.063 0.937 43 H 0.101 0.899 44 H 0.167 0.833 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.119 0.881 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.548 -6.121 -29.302 30.872 hybrid contribution -1.020 0.455 0.880 1.422 sum -8.568 -5.666 -28.422 30.221 Atomic orbital electron populations 1.22703 0.80880 1.02525 0.99777 1.87880 1.19923 1.26896 1.94964 1.21792 0.93443 0.85958 0.94721 0.91354 1.22302 1.02736 1.01683 0.96548 1.21886 0.99321 1.04352 0.92369 1.20565 0.84168 0.76490 0.87945 1.90694 1.22948 1.49485 1.77598 1.48149 1.06704 1.70813 1.09632 1.22539 0.82487 1.01163 0.99055 1.22954 1.01709 0.95799 0.82774 1.88173 1.24938 1.87299 1.26486 1.22467 0.83558 0.97767 0.93662 0.91978 1.21905 0.97587 0.96855 0.89903 1.59974 1.59089 1.04637 1.05490 1.21682 0.99259 0.99060 0.88180 1.19799 0.85616 0.88850 0.82972 1.90524 1.53265 1.32204 1.70598 1.41867 1.52933 1.20332 1.05053 1.19759 1.34274 0.99758 0.88992 0.87877 1.25259 0.97861 0.97889 0.96994 1.69622 1.46753 1.27206 1.10793 0.85799 0.78599 0.80558 0.79372 1.19236 1.20819 1.20755 1.22290 1.02768 0.99038 0.79799 0.93524 0.94598 0.89964 0.91404 0.91599 0.92075 0.87595 0.87898 0.90214 0.88926 0.92729 0.87460 0.93723 0.89875 0.83325 0.93905 0.89476 0.77462 0.91965 0.88129 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.82 101.05 1.09 1.39 16 2 O -0.38 -3.77 9.58 -49.66 -0.48 -4.25 16 3 C 0.10 0.76 2.27 -26.73 -0.06 0.70 16 4 H 0.07 0.58 7.60 -51.93 -0.39 0.18 16 5 C -0.18 -0.90 9.53 37.16 0.35 -0.55 16 6 C -0.14 -0.93 3.78 -27.88 -0.11 -1.03 16 7 C 0.52 5.35 7.59 -10.99 -0.08 5.27 16 8 O -0.53 -7.37 14.89 -8.87 -0.13 -7.51 16 9 N -0.62 -5.78 3.02 -172.25 -0.52 -6.30 16 10 C 0.07 0.47 6.54 -3.54 -0.02 0.45 16 11 C 0.05 0.39 6.98 37.31 0.26 0.65 16 12 O -0.35 -4.43 10.34 -35.23 -0.36 -4.79 16 13 C 0.08 0.98 2.96 -26.56 -0.08 0.90 16 14 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 15 C 0.07 0.85 5.36 -3.82 -0.02 0.83 16 16 N -0.66 -11.06 6.08 -115.06 -0.70 -11.75 16 17 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 18 C 0.44 10.67 7.82 -10.99 -0.09 10.58 16 19 O -0.58 -16.16 15.78 5.55 0.09 -16.07 16 20 N -0.56 -14.56 5.29 -10.97 -0.06 -14.61 16 21 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 22 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 25 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 C 0.08 0.87 5.93 -3.51 -0.02 0.85 16 30 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.04 0.22 7.87 -51.93 -0.41 -0.19 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 36 H 0.11 0.43 7.67 -51.93 -0.40 0.03 16 37 H 0.10 0.57 8.01 -51.93 -0.42 0.15 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.35 6.06 -51.93 -0.31 0.04 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.35 6.00 8.43 -39.29 -0.33 5.66 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 47 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.10 1.12 7.08 -51.93 -0.37 0.75 16 50 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 409.55 15.07 6.17 6.17 Total: -1.00 -35.91 409.55 -7.70 -43.61 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -8.37 Total: 10.53 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 0.96 Total: 12.81 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.55 Total: -56.74 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.88 Total: -32.62 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.91 -7.70 -43.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502043847.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.742 kcal (2) G-P(sol) polarization free energy of solvation -35.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds