Wall clock time and date at job start Wed Apr 1 2020 02:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00120 * 2 1 4 4 H 1.09002 * 109.46600 * 30.00109 * 3 2 1 5 5 C 1.52998 * 109.47367 * 270.00225 * 3 2 1 6 6 C 1.52995 * 109.47055 * 149.99971 * 3 2 1 7 7 C 1.50703 * 109.47485 * 295.00016 * 6 3 2 8 8 O 1.21285 * 119.99753 * 0.02562 * 7 6 3 9 9 N 1.34770 * 120.00440 * 179.97438 * 7 6 3 10 10 C 1.47151 * 120.98286 * 359.72406 * 9 7 6 11 11 C 1.53293 * 108.38543 * 129.73405 * 10 9 7 12 12 O 1.42962 * 109.22230 * 52.30787 * 11 10 9 13 13 C 1.42957 * 114.16142 * 297.41398 * 12 11 10 14 14 H 1.09004 * 109.51938 * 302.65992 * 13 12 11 15 15 C 1.53002 * 109.55235 * 182.53192 * 13 12 11 16 16 N 1.46897 * 109.47284 * 65.22874 * 15 13 12 17 17 C 1.46903 * 111.00185 * 179.97438 * 16 15 13 18 18 C 1.50698 * 109.47124 * 179.97438 * 17 16 15 19 19 O 1.21290 * 119.99940 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00066 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00005 * 180.02562 * 20 18 17 22 22 H 1.07991 * 120.00050 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99749 * 179.97438 * 21 20 18 24 24 N 1.31409 * 120.00181 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00005 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46712 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46949 * 120.00031 * 25 23 21 28 28 H 1.48495 * 109.47453 * 240.00612 * 25 23 21 29 29 C 1.47156 * 120.98466 * 180.02562 * 9 7 6 30 30 H 1.08995 * 109.47263 * 299.99766 * 1 2 3 31 31 H 1.09002 * 109.47066 * 59.99796 * 1 2 3 32 32 H 1.09005 * 109.46964 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47291 * 179.97438 * 5 3 2 34 34 H 1.09002 * 109.47165 * 299.99538 * 5 3 2 35 35 H 1.08997 * 109.47417 * 59.99783 * 5 3 2 36 36 H 1.09002 * 109.47271 * 175.00664 * 6 3 2 37 37 H 1.08996 * 109.47479 * 55.00350 * 6 3 2 38 38 H 1.08998 * 109.68184 * 249.46000 * 10 9 7 39 39 H 1.09003 * 109.67897 * 10.00956 * 10 9 7 40 40 H 1.09001 * 109.51429 * 292.37701 * 11 10 9 41 41 H 1.08999 * 109.51414 * 172.22907 * 11 10 9 42 42 H 1.09001 * 109.47091 * 185.23020 * 15 13 12 43 43 H 1.08994 * 109.47161 * 305.22748 * 15 13 12 44 44 H 1.00909 * 110.99693 * 56.04666 * 16 15 13 45 45 H 1.08999 * 109.47073 * 300.00253 * 17 16 15 46 46 H 1.09004 * 109.46469 * 60.00355 * 17 16 15 47 47 H 0.97002 * 120.00152 * 0.02562 * 20 18 17 48 48 H 0.97002 * 119.99994 * 179.97438 * 24 23 21 49 49 H 1.09002 * 109.67563 * 349.98862 * 29 9 7 50 50 H 1.08998 * 109.67968 * 110.50341 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2177 1.7715 -1.4425 6 6 3.3589 1.2632 0.7212 7 6 3.1416 0.9236 2.1733 8 8 2.0186 0.7335 2.5902 9 7 4.1952 0.8300 3.0085 10 6 5.5674 1.0493 2.5244 11 6 6.2549 2.0524 3.4576 12 8 6.1224 1.6053 4.8090 13 6 4.7715 1.5296 5.2705 14 1 4.2968 2.5056 5.1695 15 6 4.7555 1.1032 6.7398 16 7 5.3823 2.1484 7.5599 17 6 5.3843 1.7728 8.9801 18 6 6.0342 2.8664 9.7880 19 8 6.4540 3.8610 9.2351 20 7 6.1490 2.7393 11.1248 21 6 6.7398 3.7344 11.8598 22 1 7.1128 4.6204 11.3677 23 6 6.8576 3.6035 13.2381 24 7 6.4032 2.5257 13.8370 25 14 7.6632 4.9591 14.2396 26 1 8.0876 6.0574 13.3347 27 1 6.6924 5.4841 15.2331 28 1 8.8495 4.4137 14.9469 29 6 4.0080 0.4991 4.4301 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.6606 2.7674 -1.4424 34 1 2.8830 1.0776 -1.9563 35 1 1.2569 1.8016 -1.9563 36 1 3.8427 2.2370 0.6444 37 1 3.9931 0.5052 0.2617 38 1 6.1144 0.1065 2.5319 39 1 5.5395 1.4500 1.5111 40 1 5.7857 3.0304 3.3500 41 1 7.3115 2.1244 3.1999 42 1 3.7253 0.9558 7.0642 43 1 5.3090 0.1712 6.8537 44 1 4.9265 3.0380 7.4221 45 1 4.3584 1.6304 9.3197 46 1 5.9421 0.8453 9.1098 47 1 5.8136 1.9437 11.5669 48 1 6.4859 2.4342 14.7992 49 1 2.9474 0.5355 4.6788 50 1 4.3976 -0.4993 4.6290 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502043847.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:03 Heat of formation + Delta-G solvation = -182.795888 kcal Electronic energy + Delta-G solvation = -29967.109690 eV Core-core repulsion = 25607.650322 eV Total energy + Delta-G solvation = -4359.459367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.48807 -40.19602 -39.76515 -38.66085 -36.87862 -35.90238 -35.64794 -33.94726 -33.30304 -32.80625 -29.73756 -29.52930 -28.05002 -27.46297 -26.47013 -24.98164 -23.99077 -22.71675 -22.09124 -21.06563 -20.14972 -19.90817 -18.38226 -18.05051 -17.84294 -17.65881 -17.19575 -16.83001 -16.52422 -16.36958 -16.08925 -16.00875 -15.89979 -15.72815 -15.57572 -15.05917 -14.84000 -14.60049 -14.42254 -14.25497 -13.82316 -13.55925 -13.49483 -13.27180 -13.25321 -13.10664 -12.94663 -12.89785 -12.79512 -12.65200 -12.40359 -12.30436 -12.20329 -12.11023 -11.70078 -11.60932 -11.51437 -11.12321 -10.81798 -10.53653 -10.35555 -10.01473 -9.59936 -9.31418 -8.46649 -5.95521 1.36992 1.42079 1.56540 1.59024 1.81148 2.05156 2.29485 2.76113 2.86167 2.88505 3.20550 3.42366 3.49087 3.77097 3.83095 3.89535 3.98591 4.04891 4.18581 4.23161 4.29171 4.31896 4.36455 4.44826 4.46573 4.50084 4.54969 4.56155 4.58336 4.61174 4.67071 4.69376 4.78657 4.82134 4.86685 4.89909 4.98594 5.03477 5.29208 5.33793 5.41223 5.85621 6.07682 6.23184 6.26637 6.32934 6.39740 6.60268 7.10619 7.12687 7.56125 8.11628 8.70985 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.028677 B = 0.001607 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.158752 B =17414.612548 C =17791.171445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.402 6.402 3 C 0.092 3.908 4 H 0.053 0.947 5 C -0.168 4.168 6 C -0.134 4.134 7 C 0.512 3.488 8 O -0.576 6.576 9 N -0.619 5.619 10 C 0.074 3.926 11 C 0.038 3.962 12 O -0.381 6.381 13 C 0.093 3.907 14 H 0.052 0.948 15 C 0.069 3.931 16 N -0.676 5.676 17 C 0.065 3.935 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.270 1.270 29 C 0.090 3.910 30 H 0.030 0.970 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.138 0.862 37 H 0.121 0.879 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.053 0.947 41 H 0.125 0.875 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.341 0.659 45 H 0.069 0.931 46 H 0.105 0.895 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.088 0.912 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 -6.521 -30.751 32.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.322 6.322 3 C 0.034 3.966 4 H 0.071 0.929 5 C -0.225 4.225 6 C -0.173 4.173 7 C 0.302 3.698 8 O -0.455 6.455 9 N -0.353 5.353 10 C -0.048 4.048 11 C -0.039 4.039 12 O -0.299 6.299 13 C 0.034 3.966 14 H 0.070 0.930 15 C -0.060 4.060 16 N -0.308 5.308 17 C -0.067 4.067 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.196 1.196 29 C -0.034 4.034 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.156 0.844 37 H 0.139 0.861 38 H 0.106 0.894 39 H 0.146 0.854 40 H 0.071 0.929 41 H 0.143 0.857 42 H 0.081 0.919 43 H 0.107 0.893 44 H 0.160 0.840 45 H 0.087 0.913 46 H 0.123 0.877 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.107 0.893 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.933 -6.466 -30.703 32.133 hybrid contribution -1.199 0.547 1.269 1.830 sum -8.132 -5.919 -29.434 31.105 Atomic orbital electron populations 1.22744 0.80384 1.02980 0.99846 1.87832 1.20685 1.28467 1.95167 1.21978 0.93520 0.84819 0.96295 0.92929 1.22245 1.02987 1.02698 0.94571 1.21990 0.99360 1.06537 0.89440 1.21284 0.83569 0.75566 0.89373 1.90675 1.24735 1.51531 1.78604 1.48284 1.07801 1.70163 1.09069 1.22708 0.80667 1.01249 1.00182 1.23208 1.03134 0.96193 0.81362 1.88120 1.25246 1.87666 1.28891 1.22313 0.83552 0.97539 0.93198 0.93006 1.21986 0.98352 0.95684 0.89970 1.59966 1.60364 1.05503 1.05012 1.21542 1.00113 0.96860 0.88167 1.20869 0.84377 0.89548 0.82680 1.90489 1.54817 1.34374 1.71304 1.41931 1.53241 1.20101 1.05764 1.19716 1.36447 1.00215 0.90057 0.90359 1.26052 0.97784 1.00103 0.97334 1.69679 1.46724 1.28261 1.11447 0.84853 0.78072 0.77590 0.77687 1.19833 1.19557 1.19558 1.22116 1.01751 0.98862 0.80689 0.95128 0.92804 0.89407 0.89543 0.91084 0.92237 0.84426 0.86080 0.89438 0.85392 0.92851 0.85715 0.91898 0.89339 0.84031 0.91340 0.87729 0.76934 0.91290 0.89347 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.82 113.37 1.23 1.81 16 2 O -0.40 -7.82 9.58 -135.19 -1.30 -9.11 16 3 C 0.09 1.29 2.27 30.59 0.07 1.36 16 4 H 0.05 0.88 7.60 -2.39 -0.02 0.86 16 5 C -0.17 -1.34 9.53 71.98 0.69 -0.65 16 6 C -0.13 -1.46 3.78 29.85 0.11 -1.35 16 7 C 0.51 10.01 7.59 87.66 0.67 10.67 16 8 O -0.58 -16.25 14.89 10.75 0.16 -16.09 16 9 N -0.62 -10.70 3.02 -817.27 -2.47 -13.17 16 10 C 0.07 0.78 6.54 86.35 0.56 1.35 16 11 C 0.04 0.58 6.98 72.08 0.50 1.08 16 12 O -0.38 -9.25 10.34 -148.98 -1.54 -10.79 16 13 C 0.09 2.10 2.96 30.71 0.09 2.20 16 14 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 15 C 0.07 1.68 5.36 86.30 0.46 2.14 16 16 N -0.68 -22.39 6.08 -517.93 -3.15 -25.53 16 17 C 0.07 2.31 6.17 85.56 0.53 2.83 16 18 C 0.44 21.40 7.82 87.66 0.69 22.08 16 19 O -0.62 -35.56 15.78 -3.06 -0.05 -35.61 16 20 N -0.57 -30.00 5.29 -307.00 -1.62 -31.62 16 21 C -0.33 -19.36 9.68 84.04 0.81 -18.55 16 22 H 0.08 4.84 7.16 -2.92 -0.02 4.82 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -50.13 13.05 21.66 0.28 -49.84 16 25 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 C 0.09 1.79 5.93 86.37 0.51 2.30 16 30 H 0.03 0.57 8.08 -2.39 -0.02 0.55 16 31 H 0.05 0.63 7.87 -2.39 -0.02 0.61 16 32 H 0.09 1.22 8.14 -2.38 -0.02 1.21 16 33 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 0.50 7.87 -2.39 -0.02 0.48 16 36 H 0.14 0.60 7.67 -2.39 -0.02 0.58 16 37 H 0.12 0.92 8.01 -2.39 -0.02 0.90 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.13 0.44 6.06 -2.39 -0.01 0.43 16 40 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.34 11.89 8.43 -89.69 -0.76 11.14 16 45 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 47 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 48 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 49 H 0.09 1.99 7.08 -2.39 -0.02 1.97 16 50 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -79.88 409.55 -0.80 -80.68 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: -0.54 Total: 38.61 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: 7.39 Total: 27.05 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -6.96 Total: -120.17 kcal Atomic # 8 Polarization: -68.88 SS G_CDS: -2.72 Total: -71.60 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -79.88 -0.80 -80.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502043847.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.115 kcal (2) G-P(sol) polarization free energy of solvation -79.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds