Wall clock time and date at job start Wed Apr 1 2020 02:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99863 * 2 1 4 4 C 1.53002 * 109.46779 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47426 * 305.00585 * 4 3 2 6 6 C 1.53004 * 109.47243 * 65.00507 * 4 3 2 7 7 C 1.50703 * 109.47217 * 185.00435 * 4 3 2 8 8 O 1.21283 * 119.99832 * 274.76943 * 7 4 3 9 9 N 1.34777 * 120.00015 * 94.76535 * 7 4 3 10 10 C 1.47146 * 120.97998 * 354.68946 * 9 7 4 11 11 C 1.53300 * 108.38593 * 230.51268 * 10 9 7 12 12 O 1.42965 * 109.26117 * 307.72594 * 11 10 9 13 13 C 1.42959 * 114.17140 * 62.49811 * 12 11 10 14 14 H 1.09009 * 109.51391 * 57.44695 * 13 12 11 15 15 C 1.52999 * 109.51193 * 177.54929 * 13 12 11 16 16 N 1.46900 * 109.47066 * 299.89759 * 15 13 12 17 17 C 1.46897 * 110.99791 * 180.02562 * 16 15 13 18 18 C 1.50698 * 109.47288 * 179.97438 * 17 16 15 19 19 O 1.21294 * 120.00000 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00157 * 179.97438 * 18 17 16 21 21 C 1.37098 * 119.99839 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00115 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99854 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00223 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99848 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47347 * 59.99820 * 25 23 21 27 27 H 1.48499 * 109.47291 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47108 * 299.99794 * 25 23 21 29 29 C 1.47152 * 120.98281 * 174.66847 * 9 7 4 30 30 H 1.09006 * 109.46836 * 59.99329 * 1 2 3 31 31 H 1.08996 * 109.47141 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47172 * 299.99678 * 1 2 3 33 33 H 1.09005 * 109.46689 * 60.00631 * 3 2 1 34 34 H 1.08998 * 109.47453 * 300.00131 * 3 2 1 35 35 H 1.08990 * 109.47506 * 184.95653 * 6 4 3 36 36 H 1.09002 * 109.46544 * 304.95563 * 6 4 3 37 37 H 1.08999 * 109.47007 * 64.95270 * 6 4 3 38 38 H 1.08999 * 109.68480 * 350.23642 * 10 9 7 39 39 H 1.09005 * 109.68234 * 110.78988 * 10 9 7 40 40 H 1.08994 * 109.50845 * 67.62583 * 11 10 9 41 41 H 1.09003 * 109.51421 * 187.73046 * 11 10 9 42 42 H 1.09006 * 109.47009 * 179.89791 * 15 13 12 43 43 H 1.09003 * 109.47197 * 59.90216 * 15 13 12 44 44 H 1.00898 * 110.99834 * 56.05033 * 16 15 13 45 45 H 1.08997 * 109.47302 * 300.00182 * 17 16 15 46 46 H 1.09005 * 109.47075 * 59.99913 * 17 16 15 47 47 H 0.96999 * 120.00177 * 0.02562 * 20 18 17 48 48 H 0.96993 * 120.00398 * 179.97438 * 24 23 21 49 49 H 1.09006 * 109.67710 * 9.76303 * 29 9 7 50 50 H 1.08998 * 109.68326 * 249.21561 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5683 0.8427 6 6 3.9963 0.5365 -1.3065 7 6 4.1480 2.5559 0.1246 8 8 4.3223 3.2340 -0.8658 9 7 4.5020 3.0289 1.3360 10 6 4.1955 2.2756 2.5623 11 6 3.5084 3.2229 3.5526 12 8 4.3066 4.3982 3.7122 13 6 4.4705 5.1615 2.5146 14 1 3.4921 5.4463 2.1275 15 6 5.2861 6.4199 2.8182 16 7 4.5808 7.2306 3.8199 17 6 5.3359 8.4502 4.1365 18 6 4.5829 9.2547 5.1644 19 8 3.5217 8.8515 5.5917 20 7 5.0890 10.4217 5.6098 21 6 4.4041 11.1533 6.5454 22 1 3.4589 10.7947 6.9252 23 6 4.9257 12.3568 7.0042 24 7 6.0751 12.7939 6.5409 25 14 3.9929 13.3532 8.2795 26 1 3.8217 12.5432 9.5122 27 1 4.7564 14.5860 8.5998 28 1 2.6592 13.7224 7.7406 29 6 5.2069 4.3135 1.4712 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 5.0728 0.3699 -1.2697 36 1 3.4854 -0.4172 -1.4389 37 1 3.7588 1.1950 -2.1420 38 1 3.5299 1.4453 2.3265 39 1 5.1185 1.8942 2.9992 40 1 2.5263 3.4998 3.1697 41 1 3.3966 2.7244 4.5155 42 1 5.4122 7.0005 1.9043 43 1 6.2643 6.1344 3.2052 44 1 4.3945 6.6936 4.6536 45 1 6.3146 8.1791 4.5324 46 1 5.4620 9.0447 3.2315 47 1 5.9378 10.7440 5.2684 48 1 6.4390 13.6342 6.8609 49 1 5.2109 4.8326 0.5127 50 1 6.2316 4.1374 1.7982 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502044426.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:35 Heat of formation + Delta-G solvation = -155.001063 kcal Electronic energy + Delta-G solvation = -30151.980708 eV Core-core repulsion = 25793.726614 eV Total energy + Delta-G solvation = -4358.254093 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95372 -39.11518 -38.26559 -38.11669 -35.68022 -34.92844 -34.09039 -33.81685 -31.95111 -31.16269 -28.84220 -27.87115 -27.51410 -26.19462 -25.20353 -23.85295 -23.61216 -22.37002 -21.25155 -19.26216 -19.20775 -18.15970 -17.85462 -17.00329 -16.79587 -16.52428 -16.42161 -16.09520 -15.89022 -15.38188 -15.34976 -14.93661 -14.80929 -14.46831 -14.18328 -14.10884 -13.93516 -13.66184 -13.44471 -13.32635 -12.96815 -12.87099 -12.53586 -12.37573 -12.05269 -12.00615 -11.75245 -11.71281 -11.63132 -11.46961 -11.38411 -11.31579 -11.00988 -10.94095 -10.42493 -10.38091 -10.21771 -10.19149 -10.10895 -9.47521 -8.93890 -8.42749 -8.03153 -7.93083 -6.39139 -3.79881 2.06377 2.38481 3.21937 3.27277 3.27705 3.31853 3.44961 3.94064 4.01121 4.09988 4.24925 4.25462 4.42071 4.47408 4.51517 4.72417 4.74463 4.82239 4.85918 4.87764 4.94510 4.98114 5.08567 5.12292 5.17372 5.20720 5.27110 5.28541 5.32037 5.37392 5.43287 5.50089 5.54195 5.67524 5.76189 5.83825 5.87425 5.96225 6.00758 6.29372 6.56370 6.87820 6.90465 7.22418 7.57389 7.69779 7.74158 8.08959 8.64343 9.20446 9.57213 10.09045 10.78592 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024187 B = 0.001700 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.385157 B =16469.533873 C =17033.503875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.073 3.927 4 C -0.110 4.110 5 H 0.101 0.899 6 C -0.134 4.134 7 C 0.524 3.476 8 O -0.530 6.530 9 N -0.614 5.614 10 C 0.067 3.933 11 C 0.050 3.950 12 O -0.370 6.370 13 C 0.082 3.918 14 H 0.074 0.926 15 C 0.070 3.930 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.442 3.558 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.083 3.917 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.037 0.963 44 H 0.358 0.642 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.104 0.896 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.887 -26.685 -13.196 29.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.004 4.004 4 C -0.131 4.131 5 H 0.119 0.881 6 C -0.191 4.191 7 C 0.312 3.688 8 O -0.406 6.406 9 N -0.348 5.348 10 C -0.056 4.056 11 C -0.027 4.027 12 O -0.288 6.288 13 C 0.023 3.977 14 H 0.092 0.908 15 C -0.061 4.061 16 N -0.299 5.299 17 C -0.083 4.083 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.040 4.040 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.127 0.873 42 H 0.105 0.895 43 H 0.055 0.945 44 H 0.178 0.822 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.122 0.878 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.608 -26.203 -13.678 29.777 hybrid contribution 0.586 0.528 0.842 1.154 sum -3.022 -25.675 -12.836 28.863 Atomic orbital electron populations 1.22785 0.80348 1.03043 1.00380 1.87839 1.20159 1.27121 1.95509 1.22330 0.91458 0.85297 1.01332 1.21298 0.95017 0.94246 1.02541 0.88129 1.21641 1.01255 1.01100 0.95130 1.20450 0.78057 0.87859 0.82482 1.90714 1.54473 1.59002 1.36419 1.48168 1.58490 1.22004 1.06139 1.22614 1.01972 0.95521 0.85496 1.22925 0.93735 0.86209 0.99865 1.87994 1.71576 1.36774 1.32439 1.22553 0.99656 0.90444 0.85039 0.90757 1.21902 0.94738 0.91592 0.97829 1.60040 1.46223 1.07012 1.16664 1.21677 0.94903 0.92435 0.99238 1.19799 0.87815 0.83644 0.86041 1.90523 1.23696 1.71110 1.61337 1.41851 1.22015 1.18430 1.37795 1.19658 1.05182 1.01354 1.16718 0.87989 1.25258 0.96347 0.97452 0.98902 1.69601 1.18340 1.22369 1.44058 0.85912 0.79158 0.78595 0.80505 1.19947 1.21000 1.19911 1.22338 0.95982 0.84136 1.01568 0.93810 0.89284 0.93771 0.92860 0.92082 0.92333 0.90824 0.91310 0.88544 0.90051 0.92511 0.87317 0.89468 0.94465 0.82153 0.93793 0.89603 0.77453 0.91852 0.87761 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.90 10.16 -35.23 -0.36 -3.25 16 3 C 0.07 0.53 5.19 37.16 0.19 0.72 16 4 C -0.11 -0.83 2.16 -91.77 -0.20 -1.03 16 5 H 0.10 0.60 6.27 -51.93 -0.33 0.27 16 6 C -0.13 -1.01 8.89 37.16 0.33 -0.68 16 7 C 0.52 5.30 6.70 -10.98 -0.07 5.23 16 8 O -0.53 -7.23 15.63 5.55 0.09 -7.15 16 9 N -0.61 -5.57 3.02 -172.27 -0.52 -6.09 16 10 C 0.07 0.44 6.31 -3.53 -0.02 0.42 16 11 C 0.05 0.41 6.98 37.31 0.26 0.67 16 12 O -0.37 -4.30 9.73 -35.23 -0.34 -4.64 16 13 C 0.08 0.93 3.05 -26.58 -0.08 0.85 16 14 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 15 C 0.07 0.87 5.42 -3.82 -0.02 0.85 16 16 N -0.67 -11.17 6.12 -115.06 -0.70 -11.88 16 17 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 18 C 0.44 10.65 7.82 -10.99 -0.09 10.56 16 19 O -0.58 -16.17 15.78 5.55 0.09 -16.08 16 20 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 21 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 22 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 25 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 C 0.08 0.81 5.94 -3.53 -0.02 0.79 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.05 0.35 8.05 -51.93 -0.42 -0.07 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.50 7.70 -51.93 -0.40 0.10 16 37 H 0.07 0.60 7.68 -51.93 -0.40 0.21 16 38 H 0.10 0.45 5.61 -51.93 -0.29 0.16 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.36 6.46 7.83 -39.29 -0.31 6.15 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.10 1.11 7.06 -51.93 -0.37 0.74 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 408.03 15.07 6.15 6.15 Total: -1.00 -34.58 408.03 -7.10 -41.68 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -8.26 Total: 11.21 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 1.12 Total: 12.42 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.56 Total: -56.55 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.53 Total: -31.12 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.58 -7.10 -41.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502044426.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.326 kcal (2) G-P(sol) polarization free energy of solvation -34.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds