Wall clock time and date at job start Wed Apr 1 2020 02:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00009 * 2 1 4 4 C 1.52997 * 109.47093 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47400 * 54.99521 * 4 3 2 6 6 C 1.52999 * 109.47184 * 294.99629 * 4 3 2 7 7 C 1.50702 * 109.47290 * 174.99687 * 4 3 2 8 8 O 1.21281 * 119.99708 * 20.44517 * 7 4 3 9 9 N 1.34780 * 120.00291 * 200.43892 * 7 4 3 10 10 C 1.47150 * 120.97800 * 5.46588 * 9 7 4 11 11 C 1.53715 * 108.16116 * 129.42587 * 10 9 7 12 12 O 1.42964 * 109.14530 * 52.53903 * 11 10 9 13 13 C 1.42959 * 114.16378 * 297.28681 * 12 11 10 14 14 H 1.09004 * 109.51059 * 302.65591 * 13 12 11 15 15 C 1.53006 * 109.55314 * 182.53367 * 13 12 11 16 16 N 1.46898 * 109.47375 * 65.22625 * 15 13 12 17 17 C 1.46895 * 111.00232 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47532 * 179.97438 * 17 16 15 19 19 O 1.21300 * 119.99788 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00227 * 180.02562 * 18 17 16 21 21 C 1.37106 * 119.99832 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00149 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99856 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00238 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00121 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47488 * 89.99904 * 25 23 21 27 27 H 1.48500 * 109.47151 * 210.00104 * 25 23 21 28 28 H 1.48505 * 109.47001 * 329.99836 * 25 23 21 29 29 C 1.47153 * 120.98345 * 185.73988 * 9 7 4 30 30 H 1.08995 * 109.47436 * 300.00917 * 1 2 3 31 31 H 1.09002 * 109.47104 * 60.00291 * 1 2 3 32 32 H 1.08994 * 109.47581 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47475 * 59.99505 * 3 2 1 34 34 H 1.09004 * 109.46960 * 299.99321 * 3 2 1 35 35 H 1.09002 * 109.47302 * 175.81471 * 6 4 3 36 36 H 1.09003 * 109.47179 * 295.81536 * 6 4 3 37 37 H 1.08999 * 109.47092 * 55.81473 * 6 4 3 38 38 H 1.09005 * 109.67998 * 249.20534 * 10 9 7 39 39 H 1.08999 * 109.68153 * 9.75723 * 10 9 7 40 40 H 1.08991 * 109.65924 * 292.56706 * 11 10 9 41 41 H 1.09005 * 109.48185 * 172.39351 * 11 10 9 42 42 H 1.09000 * 109.46829 * 185.22714 * 15 13 12 43 43 H 1.09001 * 109.46802 * 305.22252 * 15 13 12 44 44 H 1.00902 * 111.00080 * 56.04657 * 16 15 13 45 45 H 1.08998 * 109.47328 * 300.00572 * 17 16 15 46 46 H 1.09004 * 109.46781 * 60.00097 * 17 16 15 47 47 H 0.96997 * 119.99949 * 359.97438 * 20 18 17 48 48 H 0.97002 * 120.00292 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.68138 * 350.23922 * 29 9 7 50 50 H 1.09001 * 109.68086 * 110.75470 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8514 0.5681 -0.8408 6 6 3.9952 0.5369 1.3083 7 6 4.1480 2.5559 -0.1233 8 8 3.4977 3.5387 0.1633 9 7 5.4186 2.6901 -0.5524 10 6 6.1876 1.5254 -1.0187 11 6 6.7937 1.8688 -2.3889 12 8 7.5090 3.1027 -2.2893 13 6 6.6929 4.2264 -1.9503 14 1 5.8969 4.3339 -2.6872 15 6 7.5488 5.4946 -1.9340 16 7 8.0385 5.7723 -3.2908 17 6 8.8656 6.9861 -3.3139 18 6 9.3492 7.2380 -4.7188 19 8 9.0353 6.4810 -5.6131 20 7 10.1305 8.3042 -4.9816 21 6 10.5700 8.5336 -6.2598 22 1 10.2905 7.8596 -7.0561 23 6 11.3750 9.6332 -6.5309 24 7 11.7967 9.8528 -7.7559 25 14 11.8579 10.7993 -5.1538 26 1 13.1258 10.3364 -4.5348 27 1 12.0460 12.1653 -5.7051 28 1 10.7855 10.8234 -4.1267 29 6 6.0797 4.0048 -0.5629 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 5.0738 0.3829 1.2779 36 1 3.7447 1.1895 2.1447 37 1 3.4945 -0.4231 1.4340 38 1 6.9832 1.3023 -0.3077 39 1 5.5271 0.6636 -1.1137 40 1 5.9982 1.9676 -3.1274 41 1 7.4767 1.0757 -2.6934 42 1 6.9475 6.3343 -1.5857 43 1 8.3966 5.3521 -1.2638 44 1 7.2728 5.8445 -3.9439 45 1 8.2731 7.8360 -2.9753 46 1 9.7225 6.8544 -2.6532 47 1 10.3812 8.9097 -4.2665 48 1 12.3584 10.6206 -7.9452 49 1 5.3477 4.7854 -0.3561 50 1 6.8641 4.0273 0.1936 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502044427.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:38 Heat of formation + Delta-G solvation = -145.854332 kcal Electronic energy + Delta-G solvation = -30011.863874 eV Core-core repulsion = 25654.006412 eV Total energy + Delta-G solvation = -4357.857461 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95787 -39.11851 -38.40878 -38.08662 -35.78353 -35.00315 -34.13750 -33.87608 -31.98403 -31.59614 -28.83745 -27.95745 -27.43058 -26.23221 -25.31482 -23.79553 -23.54817 -22.38542 -21.30729 -19.35454 -19.33364 -18.35069 -18.13249 -17.15310 -16.63988 -16.46825 -16.22609 -16.07367 -15.91383 -15.35734 -15.25897 -15.18765 -14.88253 -14.68217 -14.28584 -14.06370 -14.02318 -13.60012 -13.37413 -13.25221 -12.97155 -12.85514 -12.65692 -12.60776 -12.28356 -12.14430 -12.00659 -11.82206 -11.77403 -11.67092 -11.46348 -11.33730 -11.13745 -10.88730 -10.57855 -10.34381 -10.17780 -10.06578 -9.95518 -9.54925 -8.93371 -8.56403 -8.16780 -8.10078 -6.28945 -3.80289 2.12644 2.31003 3.04048 3.08673 3.16529 3.28424 3.48156 3.76980 3.94523 4.02980 4.12255 4.29641 4.41851 4.42876 4.49893 4.69549 4.75001 4.76606 4.86037 4.88109 4.88951 4.98380 4.99412 5.11527 5.15895 5.20680 5.22163 5.25332 5.27700 5.31275 5.37296 5.41320 5.45725 5.50515 5.65952 5.69084 5.76837 5.82261 5.92604 5.96481 6.62389 6.85771 6.95916 7.10508 7.57527 7.60826 7.66114 8.16975 8.62368 8.97430 9.44868 9.85634 10.84257 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.028083 B = 0.001647 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.803852 B =16994.659445 C =17045.610564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.079 3.921 4 C -0.110 4.110 5 H 0.103 0.897 6 C -0.138 4.138 7 C 0.526 3.474 8 O -0.539 6.539 9 N -0.612 5.612 10 C 0.067 3.933 11 C 0.045 3.955 12 O -0.351 6.351 13 C 0.084 3.916 14 H 0.064 0.936 15 C 0.068 3.932 16 N -0.659 5.659 17 C 0.048 3.952 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.083 3.917 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.109 0.891 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.349 0.651 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.102 0.898 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.728 -18.786 21.635 33.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C 0.002 3.998 4 C -0.131 4.131 5 H 0.121 0.879 6 C -0.196 4.196 7 C 0.314 3.686 8 O -0.415 6.415 9 N -0.346 5.346 10 C -0.055 4.055 11 C -0.032 4.032 12 O -0.268 6.268 13 C 0.025 3.975 14 H 0.082 0.918 15 C -0.062 4.062 16 N -0.292 5.292 17 C -0.084 4.084 18 C 0.237 3.763 19 O -0.445 6.445 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.040 4.040 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.169 0.831 45 H 0.062 0.938 46 H 0.107 0.893 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.120 0.880 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.317 -19.205 21.038 33.336 hybrid contribution -0.573 1.913 1.071 2.266 sum -17.889 -17.292 22.109 33.284 Atomic orbital electron populations 1.22747 0.80464 1.02856 1.00285 1.87792 1.20094 1.27663 1.95554 1.22223 0.91350 0.84473 1.01745 1.21210 0.95378 0.94454 1.02074 0.87860 1.21695 1.01548 1.01610 0.94706 1.20420 0.80967 0.90962 0.76254 1.90713 1.60617 1.40369 1.49843 1.48091 1.12886 1.09142 1.64472 1.22736 0.96679 0.88495 0.97634 1.23047 0.97405 0.88246 0.94550 1.88172 1.33589 1.14834 1.90254 1.22452 0.93280 0.87531 0.94267 0.91836 1.21907 0.98343 0.93479 0.92484 1.59954 1.26390 1.37233 1.05618 1.21712 0.98229 0.91197 0.97295 1.19697 0.83675 0.83341 0.89635 1.90571 1.59753 1.47199 1.46953 1.42201 1.46476 1.24338 1.10093 1.19438 1.27908 1.10906 0.85094 0.86297 1.25031 0.97113 0.97464 0.96547 1.69621 1.34849 1.29246 1.18506 0.86665 0.79329 0.81436 0.81902 1.19600 1.20230 1.19544 1.22327 0.97943 0.85523 0.98217 0.93908 0.93891 0.89413 0.91999 0.92691 0.91923 0.92059 0.90291 0.89999 0.88564 0.92576 0.87314 0.93675 0.89836 0.83103 0.93794 0.89349 0.79697 0.91645 0.88011 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.10 10.17 -35.23 -0.36 -3.46 16 3 C 0.08 0.63 4.70 37.16 0.17 0.81 16 4 C -0.11 -0.80 2.16 -91.77 -0.20 -0.99 16 5 H 0.10 0.61 6.26 -51.93 -0.33 0.28 16 6 C -0.14 -0.82 9.09 37.16 0.34 -0.48 16 7 C 0.53 5.14 6.86 -10.98 -0.08 5.06 16 8 O -0.54 -7.10 15.61 5.56 0.09 -7.02 16 9 N -0.61 -5.34 3.01 -172.02 -0.52 -5.86 16 10 C 0.07 0.43 6.08 -3.32 -0.02 0.41 16 11 C 0.05 0.38 7.00 37.53 0.26 0.64 16 12 O -0.35 -4.21 10.34 -35.23 -0.36 -4.58 16 13 C 0.08 0.91 2.95 -26.58 -0.08 0.83 16 14 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 15 C 0.07 0.79 5.36 -3.82 -0.02 0.77 16 16 N -0.66 -10.42 6.08 -115.06 -0.70 -11.11 16 17 C 0.05 0.81 6.17 -4.98 -0.03 0.78 16 18 C 0.45 10.38 7.82 -10.99 -0.09 10.30 16 19 O -0.56 -15.39 15.78 5.54 0.09 -15.30 16 20 N -0.59 -14.24 5.09 -10.96 -0.06 -14.30 16 21 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 22 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.96 13.96 55.50 0.77 -25.18 16 25 Si 0.88 19.49 27.74 -169.99 -4.71 14.78 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 28 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 29 C 0.08 0.78 5.94 -3.54 -0.02 0.75 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.52 8.05 -51.93 -0.42 0.11 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.30 7.70 -51.93 -0.40 -0.10 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.45 7.71 -51.93 -0.40 0.04 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.10 0.41 5.55 -51.93 -0.29 0.12 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.35 5.74 8.43 -39.29 -0.33 5.41 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.10 1.03 7.06 -51.93 -0.37 0.66 16 50 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 405.51 15.07 6.11 6.11 Total: -1.00 -36.33 405.51 -6.78 -43.12 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -8.24 Total: 10.48 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 1.11 Total: 12.33 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.50 Total: -56.45 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -0.55 Total: -30.36 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.33 -6.78 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502044427.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.738 kcal (2) G-P(sol) polarization free energy of solvation -36.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds