Wall clock time and date at job start Wed Apr 1 2020 02:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00009 * 2 1 4 4 C 1.52997 * 109.47093 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47400 * 54.99521 * 4 3 2 6 6 C 1.52999 * 109.47184 * 294.99629 * 4 3 2 7 7 C 1.50702 * 109.47290 * 174.99687 * 4 3 2 8 8 O 1.21281 * 119.99708 * 20.44517 * 7 4 3 9 9 N 1.34780 * 120.00291 * 200.43892 * 7 4 3 10 10 C 1.47150 * 120.97800 * 5.46588 * 9 7 4 11 11 C 1.53715 * 108.16116 * 129.42587 * 10 9 7 12 12 O 1.42964 * 109.14530 * 52.53903 * 11 10 9 13 13 C 1.42959 * 114.16378 * 297.28681 * 12 11 10 14 14 H 1.09004 * 109.51059 * 302.65591 * 13 12 11 15 15 C 1.53006 * 109.55314 * 182.53367 * 13 12 11 16 16 N 1.46898 * 109.47375 * 65.22625 * 15 13 12 17 17 C 1.46895 * 111.00232 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47532 * 179.97438 * 17 16 15 19 19 O 1.21300 * 119.99788 * 0.02562 * 18 17 16 20 20 N 1.34771 * 120.00227 * 180.02562 * 18 17 16 21 21 C 1.37106 * 119.99832 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00149 * 359.97438 * 21 20 18 23 23 C 1.38946 * 119.99856 * 179.97438 * 21 20 18 24 24 N 1.31406 * 120.00238 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 120.00121 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47488 * 89.99904 * 25 23 21 27 27 H 1.48500 * 109.47151 * 210.00104 * 25 23 21 28 28 H 1.48505 * 109.47001 * 329.99836 * 25 23 21 29 29 C 1.47153 * 120.98345 * 185.73988 * 9 7 4 30 30 H 1.08995 * 109.47436 * 300.00917 * 1 2 3 31 31 H 1.09002 * 109.47104 * 60.00291 * 1 2 3 32 32 H 1.08994 * 109.47581 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47475 * 59.99505 * 3 2 1 34 34 H 1.09004 * 109.46960 * 299.99321 * 3 2 1 35 35 H 1.09002 * 109.47302 * 175.81471 * 6 4 3 36 36 H 1.09003 * 109.47179 * 295.81536 * 6 4 3 37 37 H 1.08999 * 109.47092 * 55.81473 * 6 4 3 38 38 H 1.09005 * 109.67998 * 249.20534 * 10 9 7 39 39 H 1.08999 * 109.68153 * 9.75723 * 10 9 7 40 40 H 1.08991 * 109.65924 * 292.56706 * 11 10 9 41 41 H 1.09005 * 109.48185 * 172.39351 * 11 10 9 42 42 H 1.09000 * 109.46829 * 185.22714 * 15 13 12 43 43 H 1.09001 * 109.46802 * 305.22252 * 15 13 12 44 44 H 1.00902 * 111.00080 * 56.04657 * 16 15 13 45 45 H 1.08998 * 109.47328 * 300.00572 * 17 16 15 46 46 H 1.09004 * 109.46781 * 60.00097 * 17 16 15 47 47 H 0.96997 * 119.99949 * 359.97438 * 20 18 17 48 48 H 0.97002 * 120.00292 * 179.97438 * 24 23 21 49 49 H 1.08999 * 109.68138 * 350.23922 * 29 9 7 50 50 H 1.09001 * 109.68086 * 110.75470 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8514 0.5681 -0.8408 6 6 3.9952 0.5369 1.3083 7 6 4.1480 2.5559 -0.1233 8 8 3.4977 3.5387 0.1633 9 7 5.4186 2.6901 -0.5524 10 6 6.1876 1.5254 -1.0187 11 6 6.7937 1.8688 -2.3889 12 8 7.5090 3.1027 -2.2893 13 6 6.6929 4.2264 -1.9503 14 1 5.8969 4.3339 -2.6872 15 6 7.5488 5.4946 -1.9340 16 7 8.0385 5.7723 -3.2908 17 6 8.8656 6.9861 -3.3139 18 6 9.3492 7.2380 -4.7188 19 8 9.0353 6.4810 -5.6131 20 7 10.1305 8.3042 -4.9816 21 6 10.5700 8.5336 -6.2598 22 1 10.2905 7.8596 -7.0561 23 6 11.3750 9.6332 -6.5309 24 7 11.7967 9.8528 -7.7559 25 14 11.8579 10.7993 -5.1538 26 1 13.1258 10.3364 -4.5348 27 1 12.0460 12.1653 -5.7051 28 1 10.7855 10.8234 -4.1267 29 6 6.0797 4.0048 -0.5629 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 5.0738 0.3829 1.2779 36 1 3.7447 1.1895 2.1447 37 1 3.4945 -0.4231 1.4340 38 1 6.9832 1.3023 -0.3077 39 1 5.5271 0.6636 -1.1137 40 1 5.9982 1.9676 -3.1274 41 1 7.4767 1.0757 -2.6934 42 1 6.9475 6.3343 -1.5857 43 1 8.3966 5.3521 -1.2638 44 1 7.2728 5.8445 -3.9439 45 1 8.2731 7.8360 -2.9753 46 1 9.7225 6.8544 -2.6532 47 1 10.3812 8.9097 -4.2665 48 1 12.3584 10.6206 -7.9452 49 1 5.3477 4.7854 -0.3561 50 1 6.8641 4.0273 0.1936 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502044427.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:37 Heat of formation + Delta-G solvation = -176.714850 kcal Electronic energy + Delta-G solvation = -30013.202086 eV Core-core repulsion = 25654.006412 eV Total energy + Delta-G solvation = -4359.195674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.67990 -40.32626 -39.77125 -38.73334 -36.91582 -35.98749 -35.74550 -34.72212 -33.75505 -32.80563 -29.72833 -28.75205 -28.27369 -26.93941 -26.54128 -25.03313 -24.36768 -23.25446 -22.09594 -21.26779 -20.25947 -19.99970 -18.80381 -18.07998 -17.66453 -17.31301 -17.13084 -16.97211 -16.78786 -16.56368 -16.45195 -16.01201 -15.88566 -15.73380 -15.30622 -15.09986 -14.92091 -14.85335 -14.56868 -14.43718 -14.16549 -14.03618 -13.55156 -13.34657 -13.25207 -13.18179 -13.08829 -12.85141 -12.69914 -12.47096 -12.40721 -12.31036 -12.21152 -11.97243 -11.88469 -11.66199 -11.50998 -11.15228 -10.84266 -10.69380 -10.44267 -10.24435 -9.65776 -9.30241 -8.40898 -6.02050 1.30924 1.36748 1.39943 1.45423 1.65107 1.96320 2.23793 2.69209 2.72118 2.78209 3.15417 3.32531 3.40702 3.74289 3.78186 3.85425 3.89278 3.94714 4.04854 4.12995 4.19431 4.25764 4.35727 4.42265 4.43171 4.46772 4.49304 4.55424 4.58889 4.60584 4.61549 4.66524 4.78933 4.83377 4.84570 4.85997 4.92113 4.97994 5.23678 5.25565 5.52738 5.89138 6.02163 6.08775 6.18489 6.21186 6.38295 6.60323 6.88430 6.94037 7.40140 7.97214 8.76831 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.028083 B = 0.001647 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.803852 B =16994.659445 C =17045.610564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.081 3.919 4 C -0.105 4.105 5 H 0.121 0.879 6 C -0.132 4.132 7 C 0.523 3.477 8 O -0.579 6.579 9 N -0.612 5.612 10 C 0.071 3.929 11 C 0.038 3.962 12 O -0.378 6.378 13 C 0.089 3.911 14 H 0.048 0.952 15 C 0.071 3.929 16 N -0.682 5.682 17 C 0.063 3.937 18 C 0.448 3.552 19 O -0.615 6.615 20 N -0.590 5.590 21 C -0.331 4.331 22 H 0.054 0.946 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.966 3.034 26 H -0.257 1.257 27 H -0.275 1.275 28 H -0.230 1.230 29 C 0.088 3.912 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.104 0.896 33 H 0.052 0.948 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.048 0.952 41 H 0.125 0.875 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.341 0.659 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.092 0.908 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.560 -18.940 25.327 36.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C 0.004 3.996 4 C -0.126 4.126 5 H 0.139 0.861 6 C -0.190 4.190 7 C 0.313 3.687 8 O -0.459 6.459 9 N -0.344 5.344 10 C -0.050 4.050 11 C -0.039 4.039 12 O -0.296 6.296 13 C 0.030 3.970 14 H 0.066 0.934 15 C -0.058 4.058 16 N -0.314 5.314 17 C -0.069 4.069 18 C 0.236 3.764 19 O -0.500 6.500 20 N -0.232 5.232 21 C -0.460 4.460 22 H 0.072 0.928 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.786 3.214 26 H -0.181 1.181 27 H -0.200 1.200 28 H -0.154 1.154 29 C -0.035 4.035 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.067 0.933 41 H 0.143 0.857 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.159 0.841 45 H 0.097 0.903 46 H 0.134 0.866 47 H 0.226 0.774 48 H 0.089 0.911 49 H 0.111 0.889 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.151 -19.395 24.759 35.823 hybrid contribution -0.686 1.822 -0.204 1.958 sum -17.837 -17.573 24.555 35.070 Atomic orbital electron populations 1.22938 0.79324 1.04112 1.00676 1.87767 1.21415 1.27345 1.95577 1.22147 0.92086 0.84538 1.00824 1.21219 0.94645 0.93179 1.03557 0.86089 1.21673 1.02581 1.01336 0.93387 1.20857 0.80937 0.91431 0.75491 1.90692 1.61631 1.41828 1.51783 1.48197 1.12785 1.09645 1.63811 1.22876 0.97265 0.88242 0.96643 1.23260 0.97560 0.87395 0.95666 1.88123 1.34883 1.16091 1.90542 1.22365 0.92658 0.87329 0.94694 0.93373 1.21996 0.99139 0.94489 0.90209 1.59948 1.26625 1.37036 1.07806 1.21636 0.99781 0.93022 0.92465 1.21017 0.81775 0.81682 0.91964 1.90548 1.61126 1.48744 1.49562 1.42018 1.46971 1.25399 1.08831 1.19017 1.29936 1.11062 0.85988 0.92819 1.26127 0.95992 0.99119 1.00090 1.69806 1.35614 1.30366 1.21744 0.85346 0.80315 0.77503 0.78223 1.18114 1.20035 1.15368 1.22218 0.97936 0.85850 0.97490 0.93416 0.93655 0.87753 0.92966 0.93694 0.90334 0.93074 0.89730 0.88430 0.86090 0.93334 0.85690 0.91455 0.88787 0.84086 0.90285 0.86608 0.77400 0.91139 0.88925 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -5.88 10.17 -148.98 -1.51 -7.40 16 3 C 0.08 1.26 4.70 71.98 0.34 1.60 16 4 C -0.11 -1.35 2.16 -11.54 -0.02 -1.38 16 5 H 0.12 1.11 6.26 -2.39 -0.01 1.10 16 6 C -0.13 -1.29 9.09 71.98 0.65 -0.63 16 7 C 0.52 9.68 6.86 87.66 0.60 10.28 16 8 O -0.58 -15.27 15.61 -3.03 -0.05 -15.32 16 9 N -0.61 -9.64 3.01 -816.53 -2.46 -12.10 16 10 C 0.07 0.73 6.08 86.50 0.53 1.25 16 11 C 0.04 0.58 7.00 72.22 0.51 1.08 16 12 O -0.38 -8.63 10.34 -148.98 -1.54 -10.17 16 13 C 0.09 1.82 2.95 30.69 0.09 1.91 16 14 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 15 C 0.07 1.47 5.36 86.31 0.46 1.94 16 16 N -0.68 -20.61 6.08 -517.93 -3.15 -23.76 16 17 C 0.06 1.93 6.17 85.56 0.53 2.46 16 18 C 0.45 20.57 7.82 87.66 0.69 21.25 16 19 O -0.62 -34.99 15.78 -3.09 -0.05 -35.04 16 20 N -0.59 -28.16 5.09 -306.98 -1.56 -29.72 16 21 C -0.33 -19.66 10.16 84.04 0.85 -18.80 16 22 H 0.05 3.81 7.39 -2.91 -0.02 3.78 16 23 C -0.01 -0.82 5.50 84.93 0.47 -0.36 16 24 N -0.93 -56.83 13.96 21.66 0.30 -56.52 16 25 Si 0.97 38.92 27.74 68.60 1.90 40.83 16 26 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 27 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 28 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 29 C 0.09 1.51 5.94 86.35 0.51 2.03 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.89 8.05 -2.39 -0.02 0.87 16 34 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 0.52 7.70 -2.39 -0.02 0.50 16 36 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.76 7.71 -2.39 -0.02 0.74 16 38 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.12 0.63 5.55 -2.39 -0.01 0.61 16 40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.34 11.18 8.43 -89.69 -0.76 10.42 16 45 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.12 2.98 8.14 -2.38 -0.02 2.96 16 47 H 0.39 15.27 5.76 -92.71 -0.53 14.74 16 48 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 49 H 0.09 1.78 7.06 -2.39 -0.02 1.77 16 50 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -85.42 405.51 -1.06 -86.49 By element: Atomic # 1 Polarization: 38.98 SS G_CDS: -0.39 Total: 38.59 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 7.45 Total: 24.13 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -6.87 Total: -122.11 kcal Atomic # 8 Polarization: -64.77 SS G_CDS: -3.15 Total: -67.92 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 1.90 Total: 40.83 kcal Total: -85.42 -1.06 -86.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502044427.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.228 kcal (2) G-P(sol) polarization free energy of solvation -85.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds