Wall clock time and date at job start Wed Apr 1 2020 02:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99976 * 2 1 4 4 C 1.53005 * 109.47335 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46750 * 55.00078 * 4 3 2 6 6 C 1.52992 * 109.47119 * 295.00193 * 4 3 2 7 7 C 1.50694 * 109.47070 * 174.99740 * 4 3 2 8 8 O 1.21285 * 120.00398 * 34.76566 * 7 4 3 9 9 N 1.34779 * 120.00238 * 214.76265 * 7 4 3 10 10 C 1.47157 * 120.97977 * 354.69223 * 9 7 4 11 11 C 1.53297 * 108.38494 * 230.51519 * 10 9 7 12 12 O 1.42971 * 109.22059 * 307.69767 * 11 10 9 13 13 C 1.42955 * 114.16414 * 62.58209 * 12 11 10 14 14 H 1.08996 * 109.56059 * 57.36749 * 13 12 11 15 15 C 1.53005 * 109.51113 * 177.49715 * 13 12 11 16 16 N 1.46904 * 109.46892 * 299.74551 * 15 13 12 17 17 C 1.46896 * 111.00053 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.47081 * 179.97438 * 17 16 15 19 19 O 1.21281 * 120.00219 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99711 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99785 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99827 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99985 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00087 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00059 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46883 * 59.99979 * 25 23 21 27 27 H 1.48502 * 109.47341 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47217 * 300.00319 * 25 23 21 29 29 C 1.47148 * 120.98375 * 174.67161 * 9 7 4 30 30 H 1.09002 * 109.46670 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47010 * 299.99797 * 1 2 3 32 32 H 1.08999 * 109.47331 * 60.00304 * 1 2 3 33 33 H 1.09000 * 109.47275 * 60.00291 * 3 2 1 34 34 H 1.09000 * 109.46966 * 299.99831 * 3 2 1 35 35 H 1.09002 * 109.47367 * 304.99593 * 6 4 3 36 36 H 1.08997 * 109.47720 * 64.99781 * 6 4 3 37 37 H 1.08998 * 109.47378 * 185.00092 * 6 4 3 38 38 H 1.09005 * 109.67845 * 350.23393 * 10 9 7 39 39 H 1.08999 * 109.67910 * 110.78940 * 10 9 7 40 40 H 1.09000 * 109.51534 * 67.62005 * 11 10 9 41 41 H 1.08993 * 109.50997 * 187.72511 * 11 10 9 42 42 H 1.09001 * 109.47652 * 179.74724 * 15 13 12 43 43 H 1.09003 * 109.46929 * 59.74121 * 15 13 12 44 44 H 1.00899 * 111.00019 * 56.04534 * 16 15 13 45 45 H 1.08995 * 109.47429 * 300.00103 * 17 16 15 46 46 H 1.09010 * 109.47200 * 60.00066 * 17 16 15 47 47 H 0.96998 * 120.00129 * 359.97438 * 20 18 17 48 48 H 0.96998 * 120.00251 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.68600 * 9.75830 * 29 9 7 50 50 H 1.09002 * 109.71205 * 249.22378 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8514 0.5683 -0.8410 6 6 3.9952 0.5369 1.3082 7 6 4.1480 2.5560 -0.1232 8 8 3.6100 3.5098 0.3981 9 7 5.2936 2.7225 -0.8133 10 6 6.0259 1.5671 -1.3558 11 6 7.4934 1.6802 -0.9272 12 8 7.9902 2.9720 -1.2855 13 6 7.3250 4.0564 -0.6334 14 1 7.3997 3.9335 0.4470 15 6 7.9784 5.3776 -1.0438 16 7 9.3928 5.3684 -0.6471 17 6 10.0542 6.6240 -1.0265 18 6 11.5000 6.5779 -0.6038 19 8 11.9366 5.5956 -0.0423 20 7 12.3078 7.6283 -0.8499 21 6 13.6233 7.5861 -0.4659 22 1 14.0122 6.7110 0.0335 23 6 14.4562 8.6688 -0.7200 24 7 13.9831 9.7334 -1.3280 25 14 16.2487 8.6111 -0.1974 26 1 16.9242 7.4728 -0.8708 27 1 16.9171 9.8807 -0.5802 28 1 16.3297 8.4339 1.2748 29 6 5.8489 4.0650 -1.0469 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.6039 1.1048 2.1523 36 1 3.6249 -0.4871 1.3564 37 1 5.0845 0.5316 1.3477 38 1 5.5988 0.6444 -0.9629 39 1 5.9601 1.5687 -2.4438 40 1 7.5688 1.5477 0.1521 41 1 8.0798 0.9114 -1.4302 42 1 7.4679 6.2044 -0.5497 43 1 7.9050 5.4990 -2.1245 44 1 9.8736 4.5735 -1.0408 45 1 9.9952 6.7537 -2.1071 46 1 9.5581 7.4597 -0.5326 47 1 11.9587 8.4138 -1.2994 48 1 14.5645 10.4894 -1.5051 49 1 5.3046 4.7965 -0.4497 50 1 5.7653 4.3187 -2.1037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502044428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:42 Heat of formation + Delta-G solvation = -155.194433 kcal Electronic energy + Delta-G solvation = -29967.997269 eV Core-core repulsion = 25609.734791 eV Total energy + Delta-G solvation = -4358.262478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.94099 -39.12697 -38.24152 -38.06146 -35.68316 -34.93054 -34.13479 -33.81187 -31.92513 -31.15344 -28.82984 -27.93013 -27.38089 -26.19578 -25.25492 -23.84025 -23.61167 -22.35719 -21.24517 -19.26721 -19.20299 -18.16974 -17.84912 -16.98938 -16.70016 -16.47413 -16.32319 -16.19968 -15.61914 -15.39825 -15.25354 -15.16356 -14.86953 -14.46910 -14.20592 -14.14031 -13.98071 -13.54091 -13.44002 -13.28917 -12.96700 -12.89672 -12.57166 -12.49201 -12.01887 -11.99643 -11.76611 -11.73522 -11.62236 -11.46269 -11.37103 -11.34754 -11.00189 -10.93132 -10.41822 -10.37367 -10.18622 -10.17495 -10.04634 -9.46774 -8.92872 -8.41885 -8.02215 -7.92267 -6.38448 -3.79200 2.13643 2.33284 3.22599 3.27882 3.30078 3.32518 3.46821 3.94911 4.00441 4.07279 4.25683 4.30236 4.43022 4.50353 4.53648 4.74310 4.76739 4.84212 4.86462 4.88143 4.97739 5.01954 5.10231 5.17839 5.18681 5.20247 5.27769 5.28127 5.31311 5.33324 5.40763 5.44822 5.49893 5.68589 5.74375 5.77928 5.88267 5.95765 6.01514 6.30155 6.61208 6.88321 6.92137 7.23375 7.58094 7.69248 7.75091 8.09720 8.65125 9.21205 9.57969 10.09837 10.79303 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.037564 B = 0.001572 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.224574 B =17803.677431 C =18093.234600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.079 3.921 4 C -0.110 4.110 5 H 0.101 0.899 6 C -0.138 4.138 7 C 0.526 3.474 8 O -0.536 6.536 9 N -0.613 5.613 10 C 0.067 3.933 11 C 0.050 3.950 12 O -0.370 6.370 13 C 0.082 3.918 14 H 0.075 0.925 15 C 0.070 3.930 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.083 3.917 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.037 0.963 44 H 0.358 0.642 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.104 0.896 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.859 -17.839 -1.993 31.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C 0.002 3.998 4 C -0.131 4.131 5 H 0.119 0.881 6 C -0.195 4.195 7 C 0.314 3.686 8 O -0.412 6.412 9 N -0.347 5.347 10 C -0.056 4.056 11 C -0.028 4.028 12 O -0.288 6.288 13 C 0.023 3.977 14 H 0.093 0.907 15 C -0.061 4.061 16 N -0.299 5.299 17 C -0.083 4.083 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.040 4.040 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.127 0.873 42 H 0.105 0.895 43 H 0.055 0.945 44 H 0.178 0.822 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.122 0.878 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.613 -17.731 -0.875 31.163 hybrid contribution 0.354 0.628 -0.979 1.215 sum -25.259 -17.103 -1.854 30.561 Atomic orbital electron populations 1.22752 0.80497 1.02877 1.00255 1.87806 1.20059 1.27569 1.95540 1.22255 0.91334 0.84637 1.01599 1.21228 0.95338 0.94393 1.02156 0.88099 1.21694 1.01335 1.01674 0.94842 1.20420 0.80186 0.90637 0.77364 1.90717 1.61808 1.42457 1.46236 1.48111 1.23969 1.07834 1.54763 1.22617 0.93595 0.89209 1.00137 1.22932 0.92713 0.86468 1.00661 1.87993 1.59360 1.13584 1.67885 1.22551 0.89755 0.87725 0.97667 0.90698 1.21902 0.90847 0.94663 0.98642 1.60052 1.00715 1.04943 1.64188 1.21679 0.94883 0.93278 0.98420 1.19798 0.87015 0.85068 0.85401 1.90520 1.76196 1.33482 1.46413 1.41853 1.09842 1.15904 1.52519 1.19662 0.84783 1.02899 1.35580 0.87987 1.25250 1.00496 0.95054 0.97109 1.69606 1.37128 1.05812 1.41858 0.85918 0.81797 0.77343 0.79150 1.19935 1.21000 1.19908 1.22333 0.94597 0.84522 1.02533 0.89402 0.93838 0.93977 0.91775 0.92981 0.91689 0.90410 0.92093 0.88462 0.90125 0.92357 0.87332 0.89490 0.94494 0.82156 0.93809 0.89615 0.77461 0.91863 0.87791 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.06 10.33 -35.23 -0.36 -3.42 16 3 C 0.08 0.62 4.89 37.16 0.18 0.80 16 4 C -0.11 -0.82 2.16 -91.78 -0.20 -1.02 16 5 H 0.10 0.59 6.27 -51.93 -0.33 0.27 16 6 C -0.14 -0.93 8.90 37.15 0.33 -0.60 16 7 C 0.53 5.31 6.70 -10.99 -0.07 5.24 16 8 O -0.54 -7.27 15.84 5.55 0.09 -7.18 16 9 N -0.61 -5.57 3.02 -172.27 -0.52 -6.09 16 10 C 0.07 0.44 6.31 -3.53 -0.02 0.42 16 11 C 0.05 0.40 6.99 37.31 0.26 0.66 16 12 O -0.37 -4.32 9.73 -35.23 -0.34 -4.66 16 13 C 0.08 0.93 3.05 -26.57 -0.08 0.85 16 14 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 15 C 0.07 0.87 5.42 -3.82 -0.02 0.85 16 16 N -0.67 -11.20 6.13 -115.05 -0.70 -11.90 16 17 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 18 C 0.44 10.67 7.82 -10.98 -0.09 10.59 16 19 O -0.58 -16.18 15.78 5.56 0.09 -16.10 16 20 N -0.56 -14.54 5.29 -10.96 -0.06 -14.60 16 21 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.77 13.05 55.50 0.72 -24.04 16 25 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 29 C 0.08 0.82 5.94 -3.53 -0.02 0.80 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.55 8.02 -51.93 -0.42 0.14 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.47 7.96 -51.93 -0.41 0.06 16 37 H 0.06 0.38 8.05 -51.93 -0.42 -0.04 16 38 H 0.10 0.43 5.61 -51.93 -0.29 0.14 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.36 6.48 7.83 -39.29 -0.31 6.17 16 45 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.41 8.14 -51.92 -0.42 0.99 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.10 1.11 7.06 -51.93 -0.37 0.74 16 50 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 408.72 15.07 6.16 6.16 Total: -1.00 -34.69 408.72 -7.13 -41.83 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -8.29 Total: 11.14 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 1.11 Total: 12.63 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.56 Total: -56.63 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.53 Total: -31.36 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.69 -7.13 -41.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502044428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.368 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds