Wall clock time and date at job start Wed Apr 1 2020 02:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99976 * 2 1 4 4 C 1.53005 * 109.47335 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46750 * 55.00078 * 4 3 2 6 6 C 1.52992 * 109.47119 * 295.00193 * 4 3 2 7 7 C 1.50694 * 109.47070 * 174.99740 * 4 3 2 8 8 O 1.21285 * 120.00398 * 34.76566 * 7 4 3 9 9 N 1.34779 * 120.00238 * 214.76265 * 7 4 3 10 10 C 1.47157 * 120.97977 * 354.69223 * 9 7 4 11 11 C 1.53297 * 108.38494 * 230.51519 * 10 9 7 12 12 O 1.42971 * 109.22059 * 307.69767 * 11 10 9 13 13 C 1.42955 * 114.16414 * 62.58209 * 12 11 10 14 14 H 1.08996 * 109.56059 * 57.36749 * 13 12 11 15 15 C 1.53005 * 109.51113 * 177.49715 * 13 12 11 16 16 N 1.46904 * 109.46892 * 299.74551 * 15 13 12 17 17 C 1.46896 * 111.00053 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.47081 * 179.97438 * 17 16 15 19 19 O 1.21281 * 120.00219 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99711 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99785 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99827 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99985 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00087 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00059 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46883 * 59.99979 * 25 23 21 27 27 H 1.48502 * 109.47341 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47217 * 300.00319 * 25 23 21 29 29 C 1.47148 * 120.98375 * 174.67161 * 9 7 4 30 30 H 1.09002 * 109.46670 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47010 * 299.99797 * 1 2 3 32 32 H 1.08999 * 109.47331 * 60.00304 * 1 2 3 33 33 H 1.09000 * 109.47275 * 60.00291 * 3 2 1 34 34 H 1.09000 * 109.46966 * 299.99831 * 3 2 1 35 35 H 1.09002 * 109.47367 * 304.99593 * 6 4 3 36 36 H 1.08997 * 109.47720 * 64.99781 * 6 4 3 37 37 H 1.08998 * 109.47378 * 185.00092 * 6 4 3 38 38 H 1.09005 * 109.67845 * 350.23393 * 10 9 7 39 39 H 1.08999 * 109.67910 * 110.78940 * 10 9 7 40 40 H 1.09000 * 109.51534 * 67.62005 * 11 10 9 41 41 H 1.08993 * 109.50997 * 187.72511 * 11 10 9 42 42 H 1.09001 * 109.47652 * 179.74724 * 15 13 12 43 43 H 1.09003 * 109.46929 * 59.74121 * 15 13 12 44 44 H 1.00899 * 111.00019 * 56.04534 * 16 15 13 45 45 H 1.08995 * 109.47429 * 300.00103 * 17 16 15 46 46 H 1.09010 * 109.47200 * 60.00066 * 17 16 15 47 47 H 0.96998 * 120.00129 * 359.97438 * 20 18 17 48 48 H 0.96998 * 120.00251 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.68600 * 9.75830 * 29 9 7 50 50 H 1.09002 * 109.71205 * 249.22378 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8514 0.5683 -0.8410 6 6 3.9952 0.5369 1.3082 7 6 4.1480 2.5560 -0.1232 8 8 3.6100 3.5098 0.3981 9 7 5.2936 2.7225 -0.8133 10 6 6.0259 1.5671 -1.3558 11 6 7.4934 1.6802 -0.9272 12 8 7.9902 2.9720 -1.2855 13 6 7.3250 4.0564 -0.6334 14 1 7.3997 3.9335 0.4470 15 6 7.9784 5.3776 -1.0438 16 7 9.3928 5.3684 -0.6471 17 6 10.0542 6.6240 -1.0265 18 6 11.5000 6.5779 -0.6038 19 8 11.9366 5.5956 -0.0423 20 7 12.3078 7.6283 -0.8499 21 6 13.6233 7.5861 -0.4659 22 1 14.0122 6.7110 0.0335 23 6 14.4562 8.6688 -0.7200 24 7 13.9831 9.7334 -1.3280 25 14 16.2487 8.6111 -0.1974 26 1 16.9242 7.4728 -0.8708 27 1 16.9171 9.8807 -0.5802 28 1 16.3297 8.4339 1.2748 29 6 5.8489 4.0650 -1.0469 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.6039 1.1048 2.1523 36 1 3.6249 -0.4871 1.3564 37 1 5.0845 0.5316 1.3477 38 1 5.5988 0.6444 -0.9629 39 1 5.9601 1.5687 -2.4438 40 1 7.5688 1.5477 0.1521 41 1 8.0798 0.9114 -1.4302 42 1 7.4679 6.2044 -0.5497 43 1 7.9050 5.4990 -2.1245 44 1 9.8736 4.5735 -1.0408 45 1 9.9952 6.7537 -2.1071 46 1 9.5581 7.4597 -0.5326 47 1 11.9587 8.4138 -1.2994 48 1 14.5645 10.4894 -1.5051 49 1 5.3046 4.7965 -0.4497 50 1 5.7653 4.3187 -2.1037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502044428.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:41 Heat of formation + Delta-G solvation = -183.104921 kcal Electronic energy + Delta-G solvation = -29969.207559 eV Core-core repulsion = 25609.734791 eV Total energy + Delta-G solvation = -4359.472768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.69570 -40.20995 -39.77987 -38.73935 -36.87326 -35.96340 -35.70570 -34.74993 -33.30103 -32.78038 -29.71330 -28.69440 -28.33060 -26.96956 -26.54968 -25.14912 -24.38722 -23.24815 -22.09470 -21.06572 -19.96223 -19.90271 -18.84381 -17.92585 -17.80317 -17.35026 -17.12113 -16.94070 -16.84387 -16.37241 -16.32167 -16.17481 -15.89156 -15.77652 -15.66630 -15.15387 -14.92658 -14.65138 -14.54288 -14.36895 -14.14385 -13.56440 -13.53244 -13.35650 -13.21115 -13.13125 -13.05135 -12.80385 -12.60898 -12.46840 -12.42495 -12.31753 -12.24902 -12.11531 -11.92121 -11.74813 -11.49808 -11.21040 -10.85210 -10.68362 -10.35118 -10.01119 -9.68164 -9.33672 -8.45810 -5.94813 1.37955 1.40584 1.42302 1.53387 1.63870 2.05869 2.29959 2.68367 2.77109 2.89235 3.21316 3.39318 3.47461 3.72878 3.78887 3.84968 3.91464 3.98483 4.03263 4.16256 4.24166 4.32189 4.34440 4.42044 4.44643 4.47461 4.50062 4.56201 4.58842 4.62055 4.63201 4.67742 4.75082 4.82520 4.84547 4.85138 4.91278 4.96065 5.21972 5.23753 5.41226 5.86616 6.07680 6.09366 6.15827 6.18537 6.39692 6.60970 6.93971 7.13057 7.56623 8.12248 8.71330 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.037564 B = 0.001572 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.224574 B =17803.677431 C =18093.234600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.081 3.919 4 C -0.104 4.104 5 H 0.124 0.876 6 C -0.134 4.134 7 C 0.523 3.477 8 O -0.578 6.578 9 N -0.613 5.613 10 C 0.070 3.930 11 C 0.043 3.957 12 O -0.390 6.390 13 C 0.091 3.909 14 H 0.054 0.946 15 C 0.071 3.929 16 N -0.682 5.682 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.337 4.337 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.089 3.911 30 H 0.104 0.896 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.123 0.877 39 H 0.095 0.905 40 H 0.052 0.948 41 H 0.130 0.870 42 H 0.099 0.901 43 H 0.052 0.948 44 H 0.349 0.651 45 H 0.068 0.932 46 H 0.106 0.894 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.093 0.907 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.487 -18.730 -3.042 32.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C 0.004 3.996 4 C -0.125 4.125 5 H 0.142 0.858 6 C -0.192 4.192 7 C 0.313 3.687 8 O -0.457 6.457 9 N -0.346 5.346 10 C -0.052 4.052 11 C -0.034 4.034 12 O -0.309 6.309 13 C 0.032 3.968 14 H 0.073 0.927 15 C -0.058 4.058 16 N -0.314 5.314 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.198 1.198 29 C -0.035 4.035 30 H 0.122 0.878 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.141 0.859 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.148 0.852 42 H 0.117 0.883 43 H 0.070 0.930 44 H 0.168 0.832 45 H 0.086 0.914 46 H 0.124 0.876 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.111 0.889 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -26.264 -18.625 -1.949 32.256 hybrid contribution 0.500 0.848 -0.654 1.182 sum -25.764 -17.777 -2.603 31.409 Atomic orbital electron populations 1.22946 0.79275 1.04121 1.00728 1.87778 1.21453 1.27251 1.95584 1.22172 0.91712 0.84758 1.00938 1.21230 0.94926 0.92994 1.03338 0.85811 1.21677 1.01753 1.01852 0.93896 1.20893 0.80121 0.91161 0.76572 1.90696 1.63049 1.43961 1.48001 1.48227 1.23790 1.08283 1.54253 1.22787 0.92219 0.89185 1.01014 1.23180 0.94119 0.85414 1.00717 1.87961 1.60172 1.14791 1.68005 1.22353 0.90557 0.87501 0.96437 0.92749 1.22001 0.88283 0.95883 0.99677 1.60039 1.02589 1.03893 1.64908 1.21548 0.90654 0.94694 0.99881 1.20879 0.89191 0.83711 0.83778 1.90486 1.77669 1.34878 1.47997 1.41918 1.09486 1.16624 1.52934 1.19649 0.86521 1.03020 1.37449 0.90360 1.26034 1.04299 0.94283 0.96517 1.69666 1.38571 1.06099 1.41716 0.84988 0.76796 0.77890 0.78644 1.19635 1.19401 1.19807 1.22199 0.93255 0.85052 1.02979 0.87805 0.93595 0.93326 0.93136 0.93071 0.93179 0.89322 0.91357 0.85897 0.88653 0.92984 0.85238 0.88279 0.92987 0.83235 0.91404 0.87572 0.76922 0.91277 0.88898 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -5.71 10.33 -148.98 -1.54 -7.25 16 3 C 0.08 1.22 4.89 71.98 0.35 1.58 16 4 C -0.10 -1.39 2.16 -11.54 -0.02 -1.42 16 5 H 0.12 1.08 6.27 -2.39 -0.01 1.06 16 6 C -0.13 -1.64 8.90 71.98 0.64 -1.00 16 7 C 0.52 10.14 6.70 87.65 0.59 10.73 16 8 O -0.58 -15.85 15.84 -3.05 -0.05 -15.90 16 9 N -0.61 -10.27 3.02 -817.33 -2.47 -12.74 16 10 C 0.07 0.73 6.31 86.35 0.54 1.28 16 11 C 0.04 0.62 6.99 72.08 0.50 1.12 16 12 O -0.39 -8.71 9.73 -148.98 -1.45 -10.16 16 13 C 0.09 2.00 3.05 30.70 0.09 2.10 16 14 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 15 C 0.07 1.68 5.42 86.30 0.47 2.15 16 16 N -0.68 -22.53 6.13 -517.91 -3.17 -25.71 16 17 C 0.06 2.26 6.17 85.56 0.53 2.79 16 18 C 0.44 21.33 7.82 87.66 0.69 22.02 16 19 O -0.62 -35.58 15.78 -3.03 -0.05 -35.63 16 20 N -0.57 -29.89 5.29 -306.99 -1.62 -31.51 16 21 C -0.34 -19.44 9.68 84.04 0.81 -18.63 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 24 N -0.92 -49.98 13.05 21.66 0.28 -49.69 16 25 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 29 C 0.09 1.66 5.94 86.36 0.51 2.17 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.05 0.88 8.02 -2.39 -0.02 0.86 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 0.91 7.96 -2.39 -0.02 0.89 16 37 H 0.07 0.73 8.05 -2.39 -0.02 0.71 16 38 H 0.12 0.66 5.61 -2.38 -0.01 0.65 16 39 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.35 12.61 7.83 -89.69 -0.70 11.91 16 45 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.11 3.31 8.14 -2.38 -0.02 3.29 16 47 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 48 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 49 H 0.09 1.97 7.06 -2.39 -0.02 1.96 16 50 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -76.22 408.72 -1.10 -77.32 By element: Atomic # 1 Polarization: 40.21 SS G_CDS: -0.48 Total: 39.73 kcal Atomic # 6 Polarization: 18.79 SS G_CDS: 7.42 Total: 26.21 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -6.98 Total: -119.65 kcal Atomic # 8 Polarization: -65.85 SS G_CDS: -3.08 Total: -68.94 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -76.22 -1.10 -77.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502044428.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.785 kcal (2) G-P(sol) polarization free energy of solvation -76.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds