Wall clock time and date at job start Wed Apr 1 2020 02:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00280 * 2 1 4 4 C 1.53002 * 109.47144 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47077 * 305.00185 * 4 3 2 6 6 C 1.53000 * 109.46797 * 65.00094 * 4 3 2 7 7 C 1.50703 * 109.47190 * 185.00309 * 4 3 2 8 8 O 1.21275 * 119.99601 * 338.03347 * 7 4 3 9 9 N 1.34777 * 119.99893 * 158.04444 * 7 4 3 10 10 C 1.47149 * 120.98139 * 175.25022 * 9 7 4 11 11 C 1.53292 * 108.41763 * 129.44495 * 10 9 7 12 12 O 1.42965 * 109.22274 * 52.28408 * 11 10 9 13 13 C 1.42959 * 114.16578 * 297.42058 * 12 11 10 14 14 H 1.09008 * 109.50993 * 302.65691 * 13 12 11 15 15 C 1.52998 * 109.51581 * 182.55594 * 13 12 11 16 16 N 1.46899 * 109.46878 * 64.99652 * 15 13 12 17 17 C 1.46905 * 110.99757 * 180.02562 * 16 15 13 18 18 C 1.50698 * 109.47166 * 179.97438 * 17 16 15 19 19 O 1.21298 * 120.00186 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00374 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00270 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99970 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00013 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00119 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00106 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.47210 * 59.99647 * 25 23 21 27 27 H 1.48497 * 109.47345 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47376 * 299.99966 * 25 23 21 29 29 C 1.47164 * 120.98863 * 355.15965 * 9 7 4 30 30 H 1.08990 * 109.47806 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46833 * 300.00508 * 1 2 3 32 32 H 1.09002 * 109.46856 * 59.99730 * 1 2 3 33 33 H 1.08999 * 109.47356 * 60.00010 * 3 2 1 34 34 H 1.08998 * 109.47626 * 299.99731 * 3 2 1 35 35 H 1.09006 * 109.46859 * 180.02562 * 6 4 3 36 36 H 1.08999 * 109.47440 * 300.03410 * 6 4 3 37 37 H 1.09002 * 109.47310 * 60.03880 * 6 4 3 38 38 H 1.09002 * 109.68058 * 9.70071 * 10 9 7 39 39 H 1.09006 * 109.67863 * 249.19036 * 10 9 7 40 40 H 1.09002 * 109.51145 * 172.20574 * 11 10 9 41 41 H 1.08998 * 109.51686 * 292.30887 * 11 10 9 42 42 H 1.08997 * 109.47162 * 184.99573 * 15 13 12 43 43 H 1.09002 * 109.46932 * 305.00019 * 15 13 12 44 44 H 1.00893 * 111.00311 * 56.05144 * 16 15 13 45 45 H 1.08997 * 109.47163 * 300.00161 * 17 16 15 46 46 H 1.09002 * 109.46909 * 60.00219 * 17 16 15 47 47 H 0.97006 * 119.99541 * 359.97438 * 20 18 17 48 48 H 0.96996 * 120.00209 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.64611 * 110.83431 * 29 9 7 50 50 H 1.08993 * 109.71832 * 350.31409 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8508 0.5683 0.8427 6 6 3.9962 0.5363 -1.3064 7 6 4.1481 2.5558 0.1246 8 8 3.5075 3.5366 -0.1891 9 7 5.4079 2.6921 0.5837 10 6 6.0639 4.0089 0.6162 11 6 6.6435 4.2268 2.0185 12 8 7.4552 3.1042 2.3720 13 6 6.7421 1.8676 2.4495 14 1 5.9289 1.9608 3.1695 15 6 7.6940 0.7557 2.8948 16 7 8.1547 1.0246 4.2635 17 6 9.0733 -0.0247 4.7254 18 6 9.5242 0.2849 6.1296 19 8 9.1198 1.2813 6.6907 20 7 10.3769 -0.5454 6.7621 21 6 10.7866 -0.2640 8.0398 22 1 10.4265 0.6232 8.5393 23 6 11.6662 -1.1198 8.6916 24 7 12.1048 -2.1991 8.0837 25 14 12.2251 -0.7361 10.4323 26 1 11.0440 -0.6827 11.3310 27 1 13.1541 -1.7964 10.8990 28 1 12.9209 0.5757 10.4509 29 6 6.1674 1.5289 1.0693 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6887 1.8463 0.8900 34 1 1.6888 1.8464 -0.8900 35 1 5.0828 0.4497 -1.3058 36 1 3.5527 -0.4554 -1.3963 37 1 3.6815 1.1528 -2.1485 38 1 5.3344 4.7881 0.3954 39 1 6.8662 4.0376 -0.1212 40 1 7.2510 5.1317 2.0248 41 1 5.8301 4.3294 2.7368 42 1 7.1727 -0.2012 2.8683 43 1 8.5517 0.7210 2.2230 44 1 7.3740 1.1255 4.8946 45 1 8.5620 -0.9872 4.7114 46 1 9.9405 -0.0644 4.0662 47 1 10.7000 -1.3425 6.3135 48 1 12.7184 -2.7966 8.5388 49 1 6.9802 1.3073 0.3776 50 1 5.5070 0.6655 1.1484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502044429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:45 Heat of formation + Delta-G solvation = -153.023083 kcal Electronic energy + Delta-G solvation = -30181.075633 eV Core-core repulsion = 25822.907311 eV Total energy + Delta-G solvation = -4358.168322 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.93521 -39.08007 -38.25735 -38.03441 -35.58111 -35.11944 -34.06770 -33.82317 -31.92633 -31.17386 -28.93174 -27.80124 -27.20490 -26.19973 -25.14355 -24.35700 -23.42850 -22.11073 -21.36852 -19.31872 -19.22181 -18.12684 -17.87270 -17.09465 -16.68918 -16.48800 -16.16010 -16.05392 -15.68785 -15.45502 -15.21496 -15.14320 -14.73845 -14.43923 -14.27320 -14.10965 -13.98888 -13.48973 -13.44707 -13.35722 -12.91183 -12.80389 -12.64056 -12.53748 -12.13656 -11.97544 -11.88663 -11.72078 -11.53447 -11.48828 -11.40122 -11.28812 -11.00480 -10.84932 -10.43149 -10.31584 -10.20050 -10.13359 -10.02673 -9.48506 -8.90742 -8.44784 -8.03867 -7.94200 -6.40281 -3.80975 2.14936 2.34915 3.21338 3.26798 3.31096 3.32402 3.51517 3.92083 3.96988 4.06186 4.23119 4.34165 4.45434 4.51329 4.61532 4.72973 4.80929 4.81906 4.91861 4.93017 4.94784 5.08695 5.13765 5.15043 5.18834 5.22465 5.26250 5.26633 5.29758 5.35165 5.38828 5.46576 5.51538 5.56325 5.73975 5.78871 5.80468 5.97251 5.98585 6.27354 6.67380 6.87770 7.00549 7.19951 7.56493 7.64289 7.68480 8.07726 8.63083 9.19449 9.55918 10.07721 10.77429 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016568 B = 0.001828 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.644195 B =15315.984317 C =16246.328884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.080 3.920 4 C -0.112 4.112 5 H 0.104 0.896 6 C -0.138 4.138 7 C 0.527 3.473 8 O -0.541 6.541 9 N -0.611 5.611 10 C 0.075 3.925 11 C 0.047 3.953 12 O -0.350 6.350 13 C 0.082 3.918 14 H 0.064 0.936 15 C 0.068 3.932 16 N -0.660 5.660 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.273 1.273 29 C 0.074 3.926 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.348 0.652 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.084 0.916 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.887 3.231 -20.974 27.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C 0.003 3.997 4 C -0.133 4.133 5 H 0.122 0.878 6 C -0.195 4.195 7 C 0.315 3.685 8 O -0.418 6.418 9 N -0.345 5.345 10 C -0.047 4.047 11 C -0.031 4.031 12 O -0.268 6.268 13 C 0.023 3.977 14 H 0.082 0.918 15 C -0.063 4.063 16 N -0.292 5.292 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.049 4.049 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.167 0.833 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.102 0.898 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.548 4.553 -20.851 27.630 hybrid contribution -0.466 -0.923 0.715 1.257 sum -18.013 3.629 -20.136 27.260 Atomic orbital electron populations 1.22748 0.80492 1.02892 1.00211 1.87806 1.20067 1.27595 1.95536 1.22222 0.91337 0.84531 1.01640 1.21229 0.95399 0.94475 1.02177 0.87830 1.21690 1.01496 1.01694 0.94629 1.20406 0.80821 0.90926 0.76308 1.90698 1.60698 1.40528 1.49829 1.48093 1.13979 1.09173 1.63256 1.22398 0.98065 0.85342 0.98901 1.22965 0.95823 0.90605 0.93692 1.88180 1.34067 1.14836 1.89710 1.22464 0.94754 0.86245 0.94258 0.91847 1.21915 0.98090 0.93804 0.92461 1.59931 1.21419 1.46262 1.01616 1.21676 0.97344 0.92452 0.96635 1.19799 0.84171 0.85838 0.87557 1.90531 1.59757 1.28493 1.67818 1.41852 1.40458 1.23114 1.14664 1.19655 1.24299 1.09023 0.89911 0.87987 1.25259 0.96996 0.95459 1.00253 1.69601 1.33384 1.12934 1.38464 0.85914 0.78532 0.77987 0.81756 1.19948 1.21000 1.19886 1.22588 0.96997 0.88603 0.96731 0.89385 0.93916 0.93948 0.92782 0.92014 0.91932 0.90276 0.92035 0.88150 0.90420 0.87407 0.92698 0.93720 0.89808 0.83254 0.93894 0.89470 0.77462 0.91845 0.89762 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.37 10.24 -35.23 -0.36 -3.73 16 3 C 0.08 0.68 4.72 37.16 0.18 0.86 16 4 C -0.11 -0.88 2.18 -91.77 -0.20 -1.08 16 5 H 0.10 0.72 6.20 -51.93 -0.32 0.39 16 6 C -0.14 -0.91 9.06 37.16 0.34 -0.58 16 7 C 0.53 5.33 6.84 -10.98 -0.08 5.25 16 8 O -0.54 -7.13 15.62 5.56 0.09 -7.04 16 9 N -0.61 -5.57 3.02 -172.27 -0.52 -6.09 16 10 C 0.08 0.67 6.65 -3.54 -0.02 0.65 16 11 C 0.05 0.46 6.99 37.31 0.26 0.72 16 12 O -0.35 -4.37 10.33 -35.23 -0.36 -4.74 16 13 C 0.08 0.84 2.96 -26.58 -0.08 0.77 16 14 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 15 C 0.07 0.75 5.36 -3.83 -0.02 0.73 16 16 N -0.66 -10.50 6.07 -115.06 -0.70 -11.19 16 17 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 18 C 0.44 10.42 7.82 -10.99 -0.09 10.34 16 19 O -0.58 -15.95 15.78 5.54 0.09 -15.87 16 20 N -0.56 -14.30 5.29 -10.96 -0.06 -14.35 16 21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 25 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 C 0.07 0.57 5.46 -3.53 -0.02 0.55 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.54 8.05 -51.93 -0.42 0.13 16 35 H 0.06 0.36 7.81 -51.93 -0.41 -0.05 16 36 H 0.08 0.50 7.82 -51.93 -0.41 0.10 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.94 7.06 -51.93 -0.37 0.57 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.35 5.72 8.43 -39.30 -0.33 5.38 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 47 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.10 0.57 5.53 -51.93 -0.29 0.28 16 LS Contribution 408.93 15.07 6.16 6.16 Total: -1.00 -34.74 408.93 -7.14 -41.88 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -8.29 Total: 10.34 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 1.11 Total: 12.33 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.55 Total: -55.43 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.55 Total: -31.38 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.74 -7.14 -41.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502044429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.142 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds