Wall clock time and date at job start Wed Apr 1 2020 02:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00280 * 2 1 4 4 C 1.53002 * 109.47144 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47077 * 305.00185 * 4 3 2 6 6 C 1.53000 * 109.46797 * 65.00094 * 4 3 2 7 7 C 1.50703 * 109.47190 * 185.00309 * 4 3 2 8 8 O 1.21275 * 119.99601 * 338.03347 * 7 4 3 9 9 N 1.34777 * 119.99893 * 158.04444 * 7 4 3 10 10 C 1.47149 * 120.98139 * 175.25022 * 9 7 4 11 11 C 1.53292 * 108.41763 * 129.44495 * 10 9 7 12 12 O 1.42965 * 109.22274 * 52.28408 * 11 10 9 13 13 C 1.42959 * 114.16578 * 297.42058 * 12 11 10 14 14 H 1.09008 * 109.50993 * 302.65691 * 13 12 11 15 15 C 1.52998 * 109.51581 * 182.55594 * 13 12 11 16 16 N 1.46899 * 109.46878 * 64.99652 * 15 13 12 17 17 C 1.46905 * 110.99757 * 180.02562 * 16 15 13 18 18 C 1.50698 * 109.47166 * 179.97438 * 17 16 15 19 19 O 1.21298 * 120.00186 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00374 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00270 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99970 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00013 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00119 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00106 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.47210 * 59.99647 * 25 23 21 27 27 H 1.48497 * 109.47345 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47376 * 299.99966 * 25 23 21 29 29 C 1.47164 * 120.98863 * 355.15965 * 9 7 4 30 30 H 1.08990 * 109.47806 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46833 * 300.00508 * 1 2 3 32 32 H 1.09002 * 109.46856 * 59.99730 * 1 2 3 33 33 H 1.08999 * 109.47356 * 60.00010 * 3 2 1 34 34 H 1.08998 * 109.47626 * 299.99731 * 3 2 1 35 35 H 1.09006 * 109.46859 * 180.02562 * 6 4 3 36 36 H 1.08999 * 109.47440 * 300.03410 * 6 4 3 37 37 H 1.09002 * 109.47310 * 60.03880 * 6 4 3 38 38 H 1.09002 * 109.68058 * 9.70071 * 10 9 7 39 39 H 1.09006 * 109.67863 * 249.19036 * 10 9 7 40 40 H 1.09002 * 109.51145 * 172.20574 * 11 10 9 41 41 H 1.08998 * 109.51686 * 292.30887 * 11 10 9 42 42 H 1.08997 * 109.47162 * 184.99573 * 15 13 12 43 43 H 1.09002 * 109.46932 * 305.00019 * 15 13 12 44 44 H 1.00893 * 111.00311 * 56.05144 * 16 15 13 45 45 H 1.08997 * 109.47163 * 300.00161 * 17 16 15 46 46 H 1.09002 * 109.46909 * 60.00219 * 17 16 15 47 47 H 0.97006 * 119.99541 * 359.97438 * 20 18 17 48 48 H 0.96996 * 120.00209 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.64611 * 110.83431 * 29 9 7 50 50 H 1.08993 * 109.71832 * 350.31409 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8508 0.5683 0.8427 6 6 3.9962 0.5363 -1.3064 7 6 4.1481 2.5558 0.1246 8 8 3.5075 3.5366 -0.1891 9 7 5.4079 2.6921 0.5837 10 6 6.0639 4.0089 0.6162 11 6 6.6435 4.2268 2.0185 12 8 7.4552 3.1042 2.3720 13 6 6.7421 1.8676 2.4495 14 1 5.9289 1.9608 3.1695 15 6 7.6940 0.7557 2.8948 16 7 8.1547 1.0246 4.2635 17 6 9.0733 -0.0247 4.7254 18 6 9.5242 0.2849 6.1296 19 8 9.1198 1.2813 6.6907 20 7 10.3769 -0.5454 6.7621 21 6 10.7866 -0.2640 8.0398 22 1 10.4265 0.6232 8.5393 23 6 11.6662 -1.1198 8.6916 24 7 12.1048 -2.1991 8.0837 25 14 12.2251 -0.7361 10.4323 26 1 11.0440 -0.6827 11.3310 27 1 13.1541 -1.7964 10.8990 28 1 12.9209 0.5757 10.4509 29 6 6.1674 1.5289 1.0693 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6887 1.8463 0.8900 34 1 1.6888 1.8464 -0.8900 35 1 5.0828 0.4497 -1.3058 36 1 3.5527 -0.4554 -1.3963 37 1 3.6815 1.1528 -2.1485 38 1 5.3344 4.7881 0.3954 39 1 6.8662 4.0376 -0.1212 40 1 7.2510 5.1317 2.0248 41 1 5.8301 4.3294 2.7368 42 1 7.1727 -0.2012 2.8683 43 1 8.5517 0.7210 2.2230 44 1 7.3740 1.1255 4.8946 45 1 8.5620 -0.9872 4.7114 46 1 9.9405 -0.0644 4.0662 47 1 10.7000 -1.3425 6.3135 48 1 12.7184 -2.7966 8.5388 49 1 6.9802 1.3073 0.3776 50 1 5.5070 0.6655 1.1484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502044429.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:44 Heat of formation + Delta-G solvation = -181.068198 kcal Electronic energy + Delta-G solvation = -30182.291760 eV Core-core repulsion = 25822.907311 eV Total energy + Delta-G solvation = -4359.384449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69118 -40.17436 -39.74936 -38.74403 -36.79362 -35.94298 -35.80689 -34.68645 -33.28479 -32.76006 -29.84877 -28.49222 -28.28279 -26.75918 -26.62506 -25.23272 -24.65204 -22.91244 -22.14616 -21.03943 -20.02611 -19.88451 -18.81978 -18.00356 -17.71240 -17.43765 -17.13246 -16.74767 -16.71949 -16.39997 -16.34237 -16.10421 -16.01569 -15.84099 -15.44872 -15.12603 -14.89747 -14.66536 -14.57672 -14.27878 -14.12835 -13.54399 -13.47385 -13.29778 -13.26376 -13.12064 -13.06929 -12.85159 -12.66156 -12.47068 -12.41657 -12.30004 -12.21499 -12.11420 -11.88181 -11.65750 -11.48691 -11.15440 -10.84067 -10.68668 -10.32687 -9.99540 -9.66927 -9.23463 -8.44926 -5.93428 1.38924 1.40917 1.42737 1.53517 1.65520 2.08308 2.30553 2.70618 2.75269 2.93545 3.22529 3.39036 3.49681 3.74048 3.78128 3.84588 3.88940 3.98490 4.12314 4.14707 4.19634 4.32835 4.40210 4.43082 4.45088 4.48574 4.53759 4.58753 4.60489 4.61829 4.63967 4.71201 4.75799 4.81561 4.83304 4.85315 4.92518 5.00285 5.24133 5.26717 5.42345 5.89832 6.09491 6.10803 6.17825 6.22996 6.45689 6.62759 6.93135 7.14768 7.58961 8.14924 8.72150 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016568 B = 0.001828 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.644195 B =15315.984317 C =16246.328884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.082 3.918 4 C -0.108 4.108 5 H 0.119 0.881 6 C -0.132 4.132 7 C 0.525 3.475 8 O -0.578 6.578 9 N -0.610 5.610 10 C 0.079 3.921 11 C 0.048 3.952 12 O -0.378 6.378 13 C 0.081 3.919 14 H 0.055 0.945 15 C 0.069 3.931 16 N -0.683 5.683 17 C 0.068 3.932 18 C 0.436 3.564 19 O -0.626 6.626 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.080 3.920 30 H 0.103 0.897 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.341 0.659 45 H 0.073 0.927 46 H 0.105 0.895 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.101 0.899 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.802 1.686 -21.964 28.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C 0.005 3.995 4 C -0.129 4.129 5 H 0.137 0.863 6 C -0.190 4.190 7 C 0.315 3.685 8 O -0.458 6.458 9 N -0.343 5.343 10 C -0.044 4.044 11 C -0.029 4.029 12 O -0.296 6.296 13 C 0.022 3.978 14 H 0.073 0.927 15 C -0.060 4.060 16 N -0.315 5.315 17 C -0.065 4.065 18 C 0.224 3.776 19 O -0.512 6.512 20 N -0.211 5.211 21 C -0.465 4.465 22 H 0.095 0.905 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.199 1.199 29 C -0.043 4.043 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.136 0.864 41 H 0.063 0.937 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.160 0.840 45 H 0.091 0.909 46 H 0.123 0.877 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.119 0.881 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.452 2.972 -21.871 28.138 hybrid contribution -0.538 -0.407 1.000 1.206 sum -17.990 2.565 -20.871 27.674 Atomic orbital electron populations 1.22938 0.79320 1.04083 1.00701 1.87778 1.21433 1.27391 1.95578 1.22154 0.91955 0.84557 1.00869 1.21243 0.94804 0.93296 1.03513 0.86329 1.21671 1.02368 1.01516 0.93422 1.20798 0.80766 0.91343 0.75618 1.90681 1.61610 1.41890 1.51600 1.48177 1.13847 1.09677 1.62620 1.22349 0.98070 0.85384 0.98551 1.23016 0.95545 0.90471 0.93886 1.88135 1.35438 1.16018 1.90046 1.22525 0.94229 0.85439 0.95627 0.92697 1.22031 0.98862 0.95461 0.89612 1.59910 1.21520 1.46445 1.03633 1.21525 0.98623 0.94099 0.92218 1.20982 0.82520 0.84478 0.89666 1.90498 1.60899 1.30230 1.69593 1.41922 1.41186 1.23731 1.14220 1.19617 1.26076 1.09158 0.91604 0.90490 1.26020 0.96406 0.95051 1.03783 1.69657 1.33361 1.13217 1.39761 0.85004 0.78210 0.78026 0.77182 1.19716 1.19415 1.19891 1.22656 0.97718 0.88576 0.95311 0.87872 0.93632 0.93309 0.93652 0.92806 0.90545 0.89714 0.92873 0.88873 0.89266 0.86358 0.93654 0.90498 0.89180 0.84016 0.90907 0.87731 0.76873 0.91292 0.88134 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.40 -6.40 10.24 -148.98 -1.53 -7.93 16 3 C 0.08 1.34 4.72 71.98 0.34 1.68 16 4 C -0.11 -1.52 2.18 -11.54 -0.03 -1.55 16 5 H 0.12 1.31 6.20 -2.39 -0.01 1.29 16 6 C -0.13 -1.46 9.06 71.98 0.65 -0.81 16 7 C 0.53 10.07 6.84 87.66 0.60 10.67 16 8 O -0.58 -15.29 15.62 -3.02 -0.05 -15.33 16 9 N -0.61 -10.15 3.02 -817.33 -2.47 -12.62 16 10 C 0.08 1.34 6.65 86.35 0.57 1.91 16 11 C 0.05 0.92 6.99 72.08 0.50 1.43 16 12 O -0.38 -9.06 10.33 -148.98 -1.54 -10.60 16 13 C 0.08 1.51 2.96 30.69 0.09 1.60 16 14 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 15 C 0.07 1.34 5.36 86.30 0.46 1.81 16 16 N -0.68 -20.69 6.07 -517.93 -3.15 -23.84 16 17 C 0.07 2.20 6.17 85.56 0.53 2.73 16 18 C 0.44 20.65 7.82 87.66 0.69 21.34 16 19 O -0.63 -35.08 15.78 -3.08 -0.05 -35.12 16 20 N -0.57 -29.27 5.29 -306.98 -1.62 -30.89 16 21 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 22 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 24 N -0.92 -49.31 13.05 21.66 0.28 -49.02 16 25 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 29 C 0.08 1.00 5.46 86.35 0.47 1.47 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.95 8.05 -2.39 -0.02 0.93 16 35 H 0.08 0.63 7.81 -2.38 -0.02 0.62 16 36 H 0.08 0.87 7.82 -2.39 -0.02 0.85 16 37 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 1.74 7.06 -2.39 -0.02 1.72 16 39 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.34 11.00 8.43 -89.70 -0.76 10.25 16 45 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 47 H 0.40 19.07 7.90 -92.70 -0.73 18.33 16 48 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 49 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.12 0.95 5.53 -2.39 -0.01 0.93 16 Total: -1.00 -76.33 408.93 -1.21 -77.54 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -0.53 Total: 37.49 kcal Atomic # 6 Polarization: 17.90 SS G_CDS: 7.41 Total: 25.31 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -6.96 Total: -116.37 kcal Atomic # 8 Polarization: -65.82 SS G_CDS: -3.16 Total: -68.98 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -76.33 -1.21 -77.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502044429.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.526 kcal (2) G-P(sol) polarization free energy of solvation -76.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds