Wall clock time and date at job start Wed Apr 1 2020 02:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47394 * 2 1 4 4 C 1.42894 * 114.00460 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.47250 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99686 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99716 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99793 * 185.11869 * 7 5 4 9 9 C 1.53000 * 109.54323 * 57.37770 * 8 7 5 10 10 N 1.46908 * 109.47050 * 54.37953 * 9 8 7 11 11 C 1.46903 * 110.99982 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.46955 * 180.02562 * 11 10 9 13 13 O 1.21292 * 119.99878 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99836 * 180.02562 * 12 11 10 15 15 C 1.37096 * 119.99845 * 179.97438 * 14 12 11 16 16 H 1.08001 * 120.00239 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99851 * 179.97438 * 15 14 12 18 18 N 1.31409 * 119.99882 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99861 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.47349 * 60.00119 * 19 17 15 21 21 H 1.48497 * 109.46945 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47135 * 300.00202 * 19 17 15 23 23 C 1.53180 * 109.54411 * 177.55464 * 8 7 5 24 24 C 1.53106 * 109.15659 * 63.06492 * 23 8 7 25 25 O 1.42904 * 109.48624 * 57.47389 * 24 23 8 26 26 C 1.42907 * 114.09837 * 298.89142 * 25 24 23 27 27 C 1.53086 * 109.41482 * 61.15393 * 26 25 24 28 28 H 1.08996 * 109.46661 * 299.99512 * 1 2 3 29 29 H 1.08990 * 109.47242 * 60.00080 * 1 2 3 30 30 H 1.08999 * 109.46918 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46909 * 239.99759 * 2 1 3 32 32 H 1.09002 * 109.47315 * 120.00325 * 2 1 3 33 33 H 1.09005 * 109.47272 * 60.00016 * 4 3 2 34 34 H 1.09005 * 109.47008 * 300.00208 * 4 3 2 35 35 H 0.97006 * 120.00095 * 5.11995 * 7 5 4 36 36 H 1.08996 * 109.47405 * 174.37507 * 9 8 7 37 37 H 1.09001 * 109.47244 * 294.38147 * 9 8 7 38 38 H 1.00903 * 110.99628 * 56.04567 * 10 9 8 39 39 H 1.08997 * 109.46818 * 299.99856 * 11 10 9 40 40 H 1.09001 * 109.46820 * 59.99762 * 11 10 9 41 41 H 0.96994 * 119.99837 * 359.97438 * 14 12 11 42 42 H 0.97000 * 119.99933 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.52328 * 182.88495 * 23 8 7 44 44 H 1.09002 * 109.52215 * 303.07420 * 23 8 7 45 45 H 1.08995 * 109.40475 * 297.49394 * 24 23 8 46 46 H 1.08997 * 109.48960 * 177.51071 * 24 23 8 47 47 H 1.09001 * 109.47617 * 301.17391 * 26 25 24 48 48 H 1.09004 * 109.48745 * 181.14625 * 26 25 24 49 49 H 1.09004 * 109.51945 * 182.48084 * 27 26 25 50 50 H 1.09003 * 109.57542 * 62.33363 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9162 0.0001 6 8 2.9610 3.7728 0.0005 7 7 5.1209 3.2662 -0.0008 8 6 5.5001 4.6767 0.1131 9 6 4.9112 5.2629 1.3978 10 7 5.3213 4.4407 2.5441 11 6 4.7725 4.9744 3.7979 12 6 5.2139 4.1073 4.9487 13 8 5.9161 3.1397 4.7444 14 7 4.8275 4.4065 6.2047 15 6 5.2286 3.6174 7.2516 16 1 5.8546 2.7563 7.0698 17 6 4.8307 3.9261 8.5466 18 7 4.0703 4.9748 8.7679 19 14 5.3767 2.8505 9.9729 20 1 6.8599 2.8407 10.0461 21 1 4.8227 3.3905 11.2404 22 1 4.8822 1.4657 9.7662 23 6 7.0269 4.7957 0.1484 24 6 7.6016 4.2813 -1.1742 25 8 7.0394 5.0227 -2.2587 26 6 5.6192 4.9088 -2.3692 27 6 4.9647 5.4504 -1.0956 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8333 0.9767 -0.8908 34 1 3.8340 0.9764 0.8892 35 1 5.8066 2.5843 -0.0769 36 1 5.2752 6.2814 1.5326 37 1 3.8235 5.2720 1.3278 38 1 6.3262 4.3636 2.5926 39 1 5.1351 5.9910 3.9495 40 1 3.6838 4.9811 3.7442 41 1 4.2656 5.1801 6.3680 42 1 3.7922 5.1901 9.6719 43 1 7.3078 5.8400 0.2846 44 1 7.4195 4.2013 0.9734 45 1 7.3560 3.2256 -1.2895 46 1 8.6846 4.4044 -1.1724 47 1 5.3476 3.8614 -2.5002 48 1 5.2739 5.4841 -3.2283 49 1 3.8839 5.3240 -1.1595 50 1 5.2017 6.5086 -0.9848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502608606.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:41 Heat of formation + Delta-G solvation = -187.988924 kcal Electronic energy + Delta-G solvation = -31473.995236 eV Core-core repulsion = 27114.310682 eV Total energy + Delta-G solvation = -4359.684554 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.80390 -40.13894 -39.77740 -38.51119 -37.29774 -36.01986 -35.16624 -33.30067 -33.05030 -32.17422 -32.12314 -29.47686 -28.44215 -27.14064 -25.48932 -24.66228 -23.69410 -23.16128 -22.13044 -21.15427 -20.29585 -19.92199 -18.41931 -18.05860 -17.74544 -17.37718 -17.23976 -16.97164 -16.90121 -16.45818 -16.20063 -16.02317 -15.84099 -15.59696 -15.45322 -15.18410 -14.90093 -14.54129 -14.22552 -14.00299 -13.81010 -13.61200 -13.56218 -13.44512 -13.27193 -13.22666 -13.02055 -12.85743 -12.74771 -12.44592 -12.32186 -12.26986 -12.17018 -12.13537 -11.68332 -11.50918 -11.40282 -10.68415 -10.64199 -10.45689 -10.38954 -10.03686 -9.90042 -9.35771 -8.47687 -5.97099 1.38991 1.40714 1.52135 1.66565 1.92536 2.02345 2.27634 2.82725 2.96775 3.06391 3.19196 3.49063 3.52017 3.74988 3.83402 3.90450 4.03628 4.14147 4.18048 4.25290 4.27830 4.33462 4.36820 4.37474 4.43688 4.48835 4.49859 4.50012 4.62862 4.69101 4.80774 4.81442 4.82204 4.93900 5.01869 5.06586 5.08286 5.15391 5.25063 5.38897 5.57007 5.81897 6.03955 6.12492 6.25584 6.42364 6.57317 6.65196 7.09992 7.35152 7.53452 8.07503 8.69690 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008914 B = 0.003000 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3140.533529 B = 9331.624879 C =11602.377737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.399 6.399 4 C 0.043 3.957 5 C 0.522 3.478 6 O -0.561 6.561 7 N -0.696 5.696 8 C 0.190 3.810 9 C 0.051 3.949 10 N -0.665 5.665 11 C 0.065 3.935 12 C 0.442 3.558 13 O -0.617 6.617 14 N -0.574 5.574 15 C -0.335 4.335 16 H 0.082 0.918 17 C -0.014 4.014 18 N -0.922 5.922 19 Si 0.995 3.005 20 H -0.269 1.269 21 H -0.272 1.272 22 H -0.271 1.271 23 C -0.157 4.157 24 C 0.061 3.939 25 O -0.395 6.395 26 C 0.070 3.930 27 C -0.161 4.161 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.410 0.590 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.346 0.654 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.394 0.606 42 H 0.278 0.722 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.113 0.887 47 H 0.052 0.948 48 H 0.102 0.898 49 H 0.077 0.923 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.229 -4.078 -23.006 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.318 6.318 4 C -0.037 4.037 5 C 0.308 3.692 6 O -0.439 6.439 7 N -0.349 5.349 8 C 0.104 3.896 9 C -0.079 4.079 10 N -0.298 5.298 11 C -0.068 4.068 12 C 0.229 3.771 13 O -0.503 6.503 14 N -0.210 5.210 15 C -0.464 4.464 16 H 0.100 0.900 17 C -0.214 4.214 18 N -0.563 5.563 19 Si 0.818 3.182 20 H -0.194 1.194 21 H -0.196 1.196 22 H -0.197 1.197 23 C -0.195 4.195 24 C -0.015 4.015 25 O -0.314 6.314 26 C -0.006 4.006 27 C -0.200 4.200 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.247 0.753 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.165 0.835 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.228 0.772 42 H 0.087 0.913 43 H 0.109 0.891 44 H 0.107 0.893 45 H 0.081 0.919 46 H 0.131 0.869 47 H 0.070 0.930 48 H 0.120 0.880 49 H 0.096 0.904 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.478 -4.217 -23.145 23.573 hybrid contribution 0.407 0.264 1.582 1.655 sum 1.885 -3.954 -21.564 22.004 Atomic orbital electron populations 1.21763 0.93218 1.03436 1.02357 1.22750 0.96274 0.82282 1.01398 1.87969 1.19758 1.28406 1.95706 1.22313 0.83363 0.93780 1.04210 1.20458 0.82725 0.90945 0.75047 1.90622 1.50730 1.52656 1.49866 1.45594 1.06595 1.08364 1.74354 1.20266 0.94884 0.81107 0.93379 1.22379 1.01469 0.94434 0.89606 1.59953 1.16846 1.52402 1.00584 1.21477 1.00917 0.95767 0.88599 1.20676 0.84334 0.87769 0.84302 1.90461 1.42966 1.31992 1.84878 1.41939 1.46312 1.27358 1.05440 1.19663 1.30831 1.09529 0.86381 0.89998 1.26093 0.96325 0.98212 1.00767 1.69679 1.35810 1.27312 1.23508 0.84961 0.78669 0.77979 0.76569 1.19394 1.19618 1.19652 1.22506 0.92388 1.04436 1.00199 1.22691 0.99265 0.95206 0.84345 1.87929 1.21038 1.71906 1.50521 1.22504 0.80330 1.00693 0.97091 1.22515 1.02145 1.00498 0.94797 0.93398 0.92134 0.88583 0.90967 0.92818 0.87248 0.89637 0.75290 0.93566 0.91206 0.83452 0.91780 0.89540 0.77205 0.91293 0.89139 0.89260 0.91867 0.86902 0.92957 0.87969 0.90423 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.05 0.92 6.66 71.98 0.48 1.40 16 3 O -0.40 -10.75 9.87 -129.94 -1.28 -12.03 16 4 C 0.04 0.92 6.42 71.24 0.46 1.38 16 5 C 0.52 13.62 7.32 87.66 0.64 14.26 16 6 O -0.56 -19.27 12.80 16.01 0.20 -19.07 16 7 N -0.70 -13.96 3.97 -422.39 -1.68 -15.64 16 8 C 0.19 3.91 0.43 3.72 0.00 3.91 16 9 C 0.05 1.36 4.32 86.30 0.37 1.73 16 10 N -0.66 -21.13 5.84 -517.92 -3.02 -24.15 16 11 C 0.07 2.39 6.17 85.56 0.53 2.92 16 12 C 0.44 21.34 7.82 87.66 0.69 22.03 16 13 O -0.62 -33.51 15.78 -3.07 -0.05 -33.56 16 14 N -0.57 -30.08 5.29 -306.98 -1.62 -31.71 16 15 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 16 H 0.08 4.93 7.16 -2.91 -0.02 4.90 16 17 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 18 N -0.92 -50.65 13.05 21.66 0.28 -50.37 16 19 Si 0.99 43.02 29.55 68.60 2.03 45.04 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 C -0.16 -2.53 4.69 30.69 0.14 -2.38 16 24 C 0.06 0.83 6.67 72.02 0.48 1.31 16 25 O -0.39 -7.05 10.77 -148.98 -1.60 -8.65 16 26 C 0.07 1.19 6.68 72.01 0.48 1.67 16 27 C -0.16 -3.22 4.80 30.68 0.15 -3.07 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.41 6.05 7.46 -92.70 -0.69 5.35 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 2.27 6.35 -2.39 -0.02 2.26 16 38 H 0.35 10.70 6.80 -89.69 -0.61 10.09 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.39 19.98 7.90 -92.71 -0.73 19.24 16 42 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 43 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.09 1.47 6.86 -2.39 -0.02 1.45 16 45 H 0.06 0.69 7.05 -2.39 -0.02 0.67 16 46 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.05 0.85 7.75 -2.39 -0.02 0.83 16 48 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 49 H 0.08 1.95 6.15 -2.38 -0.01 1.93 16 50 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -75.55 401.41 -1.36 -76.91 By element: Atomic # 1 Polarization: 49.66 SS G_CDS: -1.06 Total: 48.60 kcal Atomic # 6 Polarization: 18.18 SS G_CDS: 6.44 Total: 24.62 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -6.04 Total: -121.86 kcal Atomic # 8 Polarization: -70.58 SS G_CDS: -2.73 Total: -73.31 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -75.55 -1.36 -76.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502608606.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.080 kcal (2) G-P(sol) polarization free energy of solvation -75.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds