Wall clock time and date at job start Wed Apr 1 2020 02:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00032 * 2 1 4 4 C 1.53003 * 109.47421 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46824 * 54.99880 * 4 3 2 6 6 O 1.42902 * 109.46681 * 295.00048 * 4 3 2 7 7 C 1.42901 * 113.99818 * 150.00007 * 6 4 3 8 8 C 1.50702 * 109.47119 * 174.99799 * 4 3 2 9 9 O 1.21283 * 119.99512 * 114.99757 * 8 4 3 10 10 N 1.34770 * 119.99932 * 294.99815 * 8 4 3 11 11 C 1.46504 * 119.99602 * 179.97438 * 10 8 4 12 12 H 1.08993 * 109.47318 * 325.00292 * 11 10 8 13 13 C 1.53001 * 109.46751 * 85.00362 * 11 10 8 14 14 C 1.52999 * 109.46800 * 204.99842 * 11 10 8 15 15 C 1.53937 * 113.73214 * 65.02163 * 14 11 10 16 16 N 1.47967 * 86.30060 * 138.01924 * 15 14 11 17 17 C 1.46900 * 110.99516 * 222.47059 * 16 15 14 18 18 C 1.50707 * 109.47000 * 170.00307 * 17 16 15 19 19 O 1.21294 * 119.99943 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00181 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00121 * 179.97438 * 20 18 17 22 22 H 1.08007 * 119.99813 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00008 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00234 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99924 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47393 * 90.00053 * 25 23 21 27 27 H 1.48498 * 109.46726 * 210.00407 * 25 23 21 28 28 H 1.48496 * 109.46886 * 329.99811 * 25 23 21 29 29 C 1.48187 * 90.67499 * 335.40573 * 16 15 14 30 30 H 1.08999 * 109.47230 * 300.00712 * 1 2 3 31 31 H 1.09000 * 109.46935 * 60.00338 * 1 2 3 32 32 H 1.08999 * 109.47062 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47250 * 59.99537 * 3 2 1 34 34 H 1.09004 * 109.46897 * 299.99776 * 3 2 1 35 35 H 1.09003 * 109.46761 * 300.00027 * 7 6 4 36 36 H 1.09004 * 109.47237 * 59.99541 * 7 6 4 37 37 H 1.08999 * 109.47069 * 179.97438 * 7 6 4 38 38 H 0.97000 * 120.00418 * 0.02562 * 10 8 4 39 39 H 1.08999 * 109.47196 * 180.02562 * 13 11 10 40 40 H 1.08992 * 109.47233 * 300.03969 * 13 11 10 41 41 H 1.09003 * 109.47316 * 60.04146 * 13 11 10 42 42 H 1.08996 * 112.94665 * 293.44575 * 14 11 10 43 43 H 1.08996 * 113.75609 * 252.38851 * 15 14 11 44 44 H 1.09001 * 113.76188 * 23.64756 * 15 14 11 45 45 H 1.09007 * 109.47313 * 289.99729 * 17 16 15 46 46 H 1.08993 * 109.47531 * 50.00224 * 17 16 15 47 47 H 0.97007 * 119.99902 * 0.02562 * 20 18 17 48 48 H 0.96998 * 120.00141 * 179.97438 * 24 23 21 49 49 H 1.08994 * 113.65493 * 270.27056 * 29 16 15 50 50 H 1.08999 * 113.91885 * 138.95174 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8515 0.5683 -0.8409 6 8 3.9648 0.5797 1.2220 7 6 5.1682 -0.1816 1.1019 8 6 4.1480 2.5561 -0.1232 9 8 4.8062 3.0108 0.7884 10 7 3.9644 3.2771 -1.2470 11 6 4.5594 4.6104 -1.3671 12 1 4.5502 5.1014 -0.3941 13 6 6.0022 4.4825 -1.8602 14 6 3.7511 5.4415 -2.3655 15 6 2.3120 5.7356 -1.9049 16 7 2.5287 7.1052 -2.4214 17 6 1.9866 8.1087 -1.4956 18 6 2.4360 9.4819 -1.9239 19 8 3.1392 9.6118 -2.9036 20 7 2.0566 10.5657 -1.2184 21 6 2.4659 11.8149 -1.6077 22 1 3.0921 11.9305 -2.4801 23 6 2.0752 12.9322 -0.8799 24 7 1.3138 12.7915 0.1818 25 14 2.6323 14.6344 -1.4108 26 1 1.6390 15.2088 -2.3534 27 1 2.7481 15.5116 -0.2183 28 1 3.9529 14.5357 -2.0827 29 6 3.9931 6.9573 -2.2490 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8465 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 5.0195 -0.9846 0.3800 36 1 5.9761 0.4669 0.7628 37 1 5.4271 -0.6072 2.0714 38 1 3.4377 2.9135 -1.9759 39 1 6.4451 5.4744 -1.9491 40 1 6.5778 3.8898 -1.1494 41 1 6.0113 3.9921 -2.8336 42 1 3.8165 5.0623 -3.3853 43 1 1.5530 5.1754 -2.4510 44 1 2.1787 5.6898 -0.8241 45 1 0.8975 8.0629 -1.5071 46 1 2.3481 7.9061 -0.4876 47 1 1.4945 10.4619 -0.4346 48 1 1.0413 13.5715 0.6901 49 1 4.3519 7.2707 -1.2686 50 1 4.5788 7.3728 -3.0690 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506656003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:11 Heat of formation + Delta-G solvation = -122.719609 kcal Electronic energy + Delta-G solvation = -30472.497638 eV Core-core repulsion = 26115.643374 eV Total energy + Delta-G solvation = -4356.854264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.78399 -39.90188 -38.37889 -37.78687 -37.34126 -35.40133 -33.90087 -32.40043 -31.28653 -30.58241 -29.38374 -27.18567 -26.54903 -25.93749 -25.78781 -24.47617 -23.80622 -21.82718 -20.77762 -19.73074 -19.21627 -18.06947 -17.83090 -17.52956 -16.90483 -16.37157 -16.13786 -15.92215 -15.72039 -15.53031 -15.31203 -14.80684 -14.65244 -14.57115 -14.37307 -14.04784 -13.73996 -13.57881 -13.45221 -13.01436 -12.85619 -12.70606 -12.51040 -12.23954 -12.19233 -11.94531 -11.78996 -11.61327 -11.48290 -11.42427 -11.08583 -10.98773 -10.92158 -10.75480 -10.54274 -10.39684 -10.21854 -10.17999 -9.62660 -9.50878 -9.40114 -8.66588 -8.23865 -7.97037 -6.42152 -3.83074 2.15433 2.61268 3.17438 3.26066 3.28601 3.31818 3.40319 3.87665 3.96220 4.20057 4.27753 4.38838 4.44245 4.54663 4.56580 4.79506 4.91767 4.94211 4.96372 5.00597 5.01367 5.10932 5.14004 5.17302 5.20852 5.25823 5.28240 5.39789 5.41291 5.49566 5.52628 5.65846 5.69844 5.74674 5.82101 5.97222 6.04913 6.18554 6.25104 6.30394 6.56195 6.59641 6.64154 7.15265 7.18662 7.54586 7.87899 8.04988 8.60583 9.17272 9.53438 10.04960 10.75605 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017105 B = 0.001970 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.582341 B =14210.305717 C =14730.334276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.069 3.931 4 C 0.077 3.923 5 H 0.095 0.905 6 O -0.350 6.350 7 C 0.031 3.969 8 C 0.493 3.507 9 O -0.516 6.516 10 N -0.720 5.720 11 C 0.149 3.851 12 H 0.090 0.910 13 C -0.161 4.161 14 C -0.129 4.129 15 C 0.004 3.996 16 N -0.452 5.452 17 C 0.010 3.990 18 C 0.444 3.556 19 O -0.580 6.580 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.034 3.966 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.091 0.909 38 H 0.400 0.600 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.054 0.946 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.068 0.932 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.376 -27.505 -0.788 27.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.008 4.008 4 C 0.014 3.986 5 H 0.113 0.887 6 O -0.267 6.267 7 C -0.066 4.066 8 C 0.277 3.723 9 O -0.390 6.390 10 N -0.374 5.374 11 C 0.045 3.955 12 H 0.108 0.892 13 C -0.220 4.220 14 C -0.149 4.149 15 C -0.126 4.126 16 N -0.175 5.175 17 C -0.122 4.122 18 C 0.229 3.771 19 O -0.464 6.464 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.095 4.095 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.234 0.766 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.108 0.892 46 H 0.072 0.928 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.993 -26.863 -1.069 26.958 hybrid contribution -0.238 0.783 0.603 1.017 sum 1.756 -26.080 -0.466 26.144 Atomic orbital electron populations 1.22796 0.80303 1.03095 1.00390 1.87892 1.20176 1.26653 1.95496 1.22483 0.90268 0.86010 1.02020 1.22002 0.94120 0.92011 0.90433 0.88740 1.88033 1.42194 1.66986 1.29470 1.22870 0.86437 0.94294 1.02985 1.21097 0.81440 0.87284 0.82481 1.90752 1.39081 1.70441 1.38713 1.46161 1.54589 1.18236 1.18409 1.21101 0.92640 0.81879 0.99898 0.89229 1.22131 0.95671 1.02942 1.01210 1.23402 0.95330 0.96408 0.99736 1.23986 0.96739 0.92609 0.99222 1.68450 1.06661 1.00364 1.41982 1.22461 1.01381 0.93593 0.94750 1.19674 0.85910 0.85186 0.86342 1.90516 1.41360 1.86131 1.28359 1.41877 1.45895 1.05496 1.26838 1.19692 1.29316 0.81909 1.11908 0.87928 1.25270 0.96811 1.00162 0.95753 1.69612 1.35811 1.31496 1.17392 0.85853 0.79227 0.81271 0.77911 1.20389 1.20925 1.19426 1.23776 0.91699 0.91745 1.02322 0.93680 0.93753 0.89319 0.91486 0.91168 0.93748 0.93730 0.89101 0.76590 0.90987 0.92306 0.92319 0.87738 0.89557 0.91452 0.89201 0.92836 0.77501 0.91861 0.91387 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.27 10.67 -40.08 -0.43 -3.69 16 3 C 0.07 0.53 5.57 37.16 0.21 0.74 16 4 C 0.08 0.66 2.80 -27.88 -0.08 0.58 16 5 H 0.09 0.61 7.79 -51.93 -0.40 0.20 16 6 O -0.35 -3.88 9.85 -59.70 -0.59 -4.47 16 7 C 0.03 0.25 10.81 101.05 1.09 1.34 16 8 C 0.49 5.09 7.10 -10.99 -0.08 5.01 16 9 O -0.52 -7.63 16.17 -14.30 -0.23 -7.86 16 10 N -0.72 -5.73 4.84 -53.81 -0.26 -5.99 16 11 C 0.15 1.46 2.29 -67.93 -0.16 1.30 16 12 H 0.09 1.10 7.48 -51.93 -0.39 0.71 16 13 C -0.16 -1.50 9.44 37.16 0.35 -1.15 16 14 C -0.13 -1.33 3.36 -89.67 -0.30 -1.63 16 15 C 0.00 0.04 7.40 -2.76 -0.02 0.02 16 16 N -0.45 -7.23 5.95 -238.75 -1.42 -8.65 16 17 C 0.01 0.18 5.31 -4.97 -0.03 0.15 16 18 C 0.44 10.53 7.59 -10.98 -0.08 10.44 16 19 O -0.58 -15.67 15.14 5.55 0.08 -15.59 16 20 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 21 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 22 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 25 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 C 0.03 0.50 6.23 -2.64 -0.02 0.48 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.36 7.77 -51.93 -0.40 -0.05 16 35 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 36 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.40 2.05 8.31 -40.82 -0.34 1.71 16 39 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 45 H 0.09 1.48 8.14 -51.92 -0.42 1.05 16 46 H 0.05 0.87 7.69 -51.93 -0.40 0.47 16 47 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 49 H 0.07 1.03 7.67 -51.93 -0.40 0.63 16 50 H 0.10 1.58 8.10 -51.93 -0.42 1.16 16 LS Contribution 417.58 15.07 6.29 6.29 Total: -1.00 -35.57 417.58 -7.63 -43.19 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -8.48 Total: 8.54 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 1.76 Total: 10.54 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -1.02 Total: -53.10 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -1.16 Total: -31.61 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.57 -7.63 -43.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506656003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.527 kcal (2) G-P(sol) polarization free energy of solvation -35.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds