Wall clock time and date at job start Wed Apr 1 2020 02:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00032 * 2 1 4 4 C 1.53003 * 109.47421 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46824 * 54.99880 * 4 3 2 6 6 O 1.42902 * 109.46681 * 295.00048 * 4 3 2 7 7 C 1.42901 * 113.99818 * 150.00007 * 6 4 3 8 8 C 1.50702 * 109.47119 * 174.99799 * 4 3 2 9 9 O 1.21283 * 119.99512 * 114.99757 * 8 4 3 10 10 N 1.34770 * 119.99932 * 294.99815 * 8 4 3 11 11 C 1.46504 * 119.99602 * 179.97438 * 10 8 4 12 12 H 1.08993 * 109.47318 * 325.00292 * 11 10 8 13 13 C 1.53001 * 109.46751 * 85.00362 * 11 10 8 14 14 C 1.52999 * 109.46800 * 204.99842 * 11 10 8 15 15 C 1.53937 * 113.73214 * 65.02163 * 14 11 10 16 16 N 1.47967 * 86.30060 * 138.01924 * 15 14 11 17 17 C 1.46900 * 110.99516 * 222.47059 * 16 15 14 18 18 C 1.50707 * 109.47000 * 170.00307 * 17 16 15 19 19 O 1.21294 * 119.99943 * 359.97438 * 18 17 16 20 20 N 1.34772 * 120.00181 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00121 * 179.97438 * 20 18 17 22 22 H 1.08007 * 119.99813 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00008 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00234 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99924 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47393 * 90.00053 * 25 23 21 27 27 H 1.48498 * 109.46726 * 210.00407 * 25 23 21 28 28 H 1.48496 * 109.46886 * 329.99811 * 25 23 21 29 29 C 1.48187 * 90.67499 * 335.40573 * 16 15 14 30 30 H 1.08999 * 109.47230 * 300.00712 * 1 2 3 31 31 H 1.09000 * 109.46935 * 60.00338 * 1 2 3 32 32 H 1.08999 * 109.47062 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47250 * 59.99537 * 3 2 1 34 34 H 1.09004 * 109.46897 * 299.99776 * 3 2 1 35 35 H 1.09003 * 109.46761 * 300.00027 * 7 6 4 36 36 H 1.09004 * 109.47237 * 59.99541 * 7 6 4 37 37 H 1.08999 * 109.47069 * 179.97438 * 7 6 4 38 38 H 0.97000 * 120.00418 * 0.02562 * 10 8 4 39 39 H 1.08999 * 109.47196 * 180.02562 * 13 11 10 40 40 H 1.08992 * 109.47233 * 300.03969 * 13 11 10 41 41 H 1.09003 * 109.47316 * 60.04146 * 13 11 10 42 42 H 1.08996 * 112.94665 * 293.44575 * 14 11 10 43 43 H 1.08996 * 113.75609 * 252.38851 * 15 14 11 44 44 H 1.09001 * 113.76188 * 23.64756 * 15 14 11 45 45 H 1.09007 * 109.47313 * 289.99729 * 17 16 15 46 46 H 1.08993 * 109.47531 * 50.00224 * 17 16 15 47 47 H 0.97007 * 119.99902 * 0.02562 * 20 18 17 48 48 H 0.96998 * 120.00141 * 179.97438 * 24 23 21 49 49 H 1.08994 * 113.65493 * 270.27056 * 29 16 15 50 50 H 1.08999 * 113.91885 * 138.95174 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8515 0.5683 -0.8409 6 8 3.9648 0.5797 1.2220 7 6 5.1682 -0.1816 1.1019 8 6 4.1480 2.5561 -0.1232 9 8 4.8062 3.0108 0.7884 10 7 3.9644 3.2771 -1.2470 11 6 4.5594 4.6104 -1.3671 12 1 4.5502 5.1014 -0.3941 13 6 6.0022 4.4825 -1.8602 14 6 3.7511 5.4415 -2.3655 15 6 2.3120 5.7356 -1.9049 16 7 2.5287 7.1052 -2.4214 17 6 1.9866 8.1087 -1.4956 18 6 2.4360 9.4819 -1.9239 19 8 3.1392 9.6118 -2.9036 20 7 2.0566 10.5657 -1.2184 21 6 2.4659 11.8149 -1.6077 22 1 3.0921 11.9305 -2.4801 23 6 2.0752 12.9322 -0.8799 24 7 1.3138 12.7915 0.1818 25 14 2.6323 14.6344 -1.4108 26 1 1.6390 15.2088 -2.3534 27 1 2.7481 15.5116 -0.2183 28 1 3.9529 14.5357 -2.0827 29 6 3.9931 6.9573 -2.2490 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8465 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 5.0195 -0.9846 0.3800 36 1 5.9761 0.4669 0.7628 37 1 5.4271 -0.6072 2.0714 38 1 3.4377 2.9135 -1.9759 39 1 6.4451 5.4744 -1.9491 40 1 6.5778 3.8898 -1.1494 41 1 6.0113 3.9921 -2.8336 42 1 3.8165 5.0623 -3.3853 43 1 1.5530 5.1754 -2.4510 44 1 2.1787 5.6898 -0.8241 45 1 0.8975 8.0629 -1.5071 46 1 2.3481 7.9061 -0.4876 47 1 1.4945 10.4619 -0.4346 48 1 1.0413 13.5715 0.6901 49 1 4.3519 7.2707 -1.2686 50 1 4.5788 7.3728 -3.0690 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506656003.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:11 Heat of formation + Delta-G solvation = -152.338042 kcal Electronic energy + Delta-G solvation = -30473.781990 eV Core-core repulsion = 26115.643374 eV Total energy + Delta-G solvation = -4358.138616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.71606 -40.94563 -39.63934 -38.93345 -38.05503 -36.38131 -35.89974 -33.39644 -33.14374 -31.51925 -30.43346 -27.69471 -27.46855 -27.20883 -26.86604 -25.72286 -24.74884 -22.83664 -21.58602 -21.01392 -20.67212 -19.91338 -18.74475 -18.26417 -17.84691 -17.56257 -17.07452 -16.78642 -16.68681 -16.52279 -16.30616 -16.24794 -15.82617 -15.64071 -15.48702 -15.24315 -15.02016 -14.82141 -14.32227 -14.08248 -13.91300 -13.64220 -13.51912 -13.40402 -13.33977 -13.08115 -12.92828 -12.73467 -12.60601 -12.44514 -12.33214 -12.14880 -12.07285 -11.94128 -11.82851 -11.61383 -11.59862 -11.49951 -10.69310 -10.41443 -10.35475 -10.21855 -10.03820 -9.67222 -8.48649 -5.97642 1.36331 1.39216 1.39932 1.52876 1.87179 2.02346 2.27090 2.69416 2.80209 2.81816 3.17637 3.26527 3.42569 3.64843 3.76735 3.84014 3.95689 4.10012 4.16446 4.22956 4.31541 4.34273 4.37842 4.41038 4.48412 4.50704 4.52370 4.52902 4.54336 4.59651 4.63667 4.74536 4.78558 4.81944 4.87155 4.92473 4.96713 5.18179 5.29472 5.37894 5.41231 5.44866 5.88387 5.94643 6.06147 6.13772 6.50056 6.57483 7.10282 7.16068 7.53272 8.08671 8.68842 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017105 B = 0.001970 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.582341 B =14210.305717 C =14730.334276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.070 3.930 4 C 0.077 3.923 5 H 0.122 0.878 6 O -0.381 6.381 7 C 0.027 3.973 8 C 0.496 3.504 9 O -0.567 6.567 10 N -0.701 5.701 11 C 0.157 3.843 12 H 0.063 0.937 13 C -0.158 4.158 14 C -0.099 4.099 15 C 0.012 3.988 16 N -0.477 5.477 17 C 0.023 3.977 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.273 1.273 29 C 0.023 3.977 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.036 0.964 37 H 0.096 0.904 38 H 0.419 0.581 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.079 0.921 42 H 0.127 0.873 43 H 0.116 0.884 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.069 0.931 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.055 0.945 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.342 -29.103 -1.765 29.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.007 4.007 4 C 0.016 3.984 5 H 0.139 0.861 6 O -0.298 6.298 7 C -0.069 4.069 8 C 0.281 3.719 9 O -0.445 6.445 10 N -0.355 5.355 11 C 0.052 3.948 12 H 0.081 0.919 13 C -0.216 4.216 14 C -0.118 4.118 15 C -0.116 4.116 16 N -0.200 5.200 17 C -0.109 4.109 18 C 0.228 3.772 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.107 4.107 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.257 0.743 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.145 0.855 43 H 0.134 0.866 44 H 0.090 0.910 45 H 0.127 0.873 46 H 0.087 0.913 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.919 -28.497 -2.066 28.587 hybrid contribution 0.085 1.223 0.887 1.513 sum 1.004 -27.275 -1.179 27.318 Atomic orbital electron populations 1.22966 0.78996 1.04075 1.01091 1.87854 1.21649 1.27067 1.95647 1.22533 0.89432 0.85982 1.02726 1.22139 0.94766 0.90926 0.90609 0.86082 1.87993 1.43120 1.67474 1.31196 1.22992 0.85413 0.94439 1.04041 1.21459 0.80561 0.87806 0.82039 1.90736 1.41485 1.71653 1.40603 1.45933 1.54010 1.17162 1.18438 1.20856 0.93071 0.82477 0.98414 0.91872 1.22090 0.94985 1.02598 1.01919 1.23199 0.94481 0.93277 1.00892 1.24098 0.97954 0.89691 0.99885 1.68458 1.07159 1.02090 1.42291 1.22344 1.02441 0.90380 0.95722 1.20742 0.84368 0.86934 0.85191 1.90483 1.42720 1.87155 1.29920 1.41968 1.46454 1.05525 1.27338 1.19655 1.30624 0.83724 1.12204 0.90297 1.26069 0.96459 1.03373 0.95535 1.69674 1.35980 1.32761 1.17795 0.84916 0.78611 0.76783 0.77963 1.19527 1.19546 1.19751 1.23741 0.90997 0.95180 1.00767 0.93863 0.92141 0.88322 0.93039 0.88153 0.91655 0.94546 0.88525 0.74341 0.91683 0.93535 0.90188 0.85497 0.86605 0.91025 0.87297 0.91290 0.77106 0.91291 0.92645 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.47 16 2 O -0.40 -5.99 10.67 -144.34 -1.54 -7.53 16 3 C 0.07 0.91 5.57 71.98 0.40 1.31 16 4 C 0.08 1.19 2.80 29.85 0.08 1.28 16 5 H 0.12 1.19 7.79 -2.39 -0.02 1.17 16 6 O -0.38 -8.15 9.85 -125.59 -1.24 -9.39 16 7 C 0.03 0.42 10.81 113.37 1.23 1.64 16 8 C 0.50 9.58 7.10 87.66 0.62 10.20 16 9 O -0.57 -16.90 16.17 15.95 0.26 -16.64 16 10 N -0.70 -9.36 4.84 -442.54 -2.14 -11.51 16 11 C 0.16 2.83 2.29 44.99 0.10 2.93 16 12 H 0.06 1.54 7.48 -2.39 -0.02 1.52 16 13 C -0.16 -2.76 9.44 71.98 0.68 -2.08 16 14 C -0.10 -1.81 3.36 -10.15 -0.03 -1.84 16 15 C 0.01 0.23 7.40 86.41 0.64 0.87 16 16 N -0.48 -14.61 5.95 -909.27 -5.41 -20.02 16 17 C 0.02 0.80 5.31 85.56 0.45 1.25 16 18 C 0.44 21.28 7.59 87.66 0.67 21.95 16 19 O -0.62 -34.35 15.14 -3.07 -0.05 -34.39 16 20 N -0.58 -30.10 5.29 -306.98 -1.62 -31.72 16 21 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 25 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 29 C 0.02 0.66 6.23 86.36 0.54 1.20 16 30 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.10 0.64 7.77 -2.38 -0.02 0.62 16 35 H 0.06 0.70 8.09 -2.39 -0.02 0.68 16 36 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.42 2.54 8.31 -92.71 -0.77 1.77 16 39 H 0.06 1.23 8.09 -2.39 -0.02 1.21 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.07 1.39 7.75 -2.39 -0.02 1.37 16 45 H 0.11 3.38 8.14 -2.38 -0.02 3.36 16 46 H 0.07 2.19 7.69 -2.39 -0.02 2.17 16 47 H 0.40 19.70 7.90 -92.70 -0.73 18.97 16 48 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 49 H 0.06 1.73 7.67 -2.39 -0.02 1.71 16 50 H 0.07 2.47 8.10 -2.39 -0.02 2.45 16 Total: -1.00 -80.01 417.58 -2.08 -82.10 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -0.55 Total: 32.26 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: 7.91 Total: 21.51 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -8.90 Total: -113.35 kcal Atomic # 8 Polarization: -65.39 SS G_CDS: -2.57 Total: -67.96 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -80.01 -2.08 -82.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506656003.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.241 kcal (2) G-P(sol) polarization free energy of solvation -80.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds