Wall clock time and date at job start Wed Apr 1 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99466 * 2 1 4 4 C 1.53004 * 109.47114 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46802 * 54.99624 * 4 3 2 6 6 O 1.42891 * 109.47010 * 295.00314 * 4 3 2 7 7 C 1.42898 * 114.00520 * 149.99966 * 6 4 3 8 8 C 1.50699 * 109.47373 * 174.99860 * 4 3 2 9 9 O 1.21279 * 119.99997 * 115.00203 * 8 4 3 10 10 N 1.34777 * 120.00179 * 294.99853 * 8 4 3 11 11 C 1.46497 * 120.00376 * 179.97438 * 10 8 4 12 12 H 1.09002 * 109.46725 * 35.00314 * 11 10 8 13 13 C 1.52997 * 109.47188 * 275.00479 * 11 10 8 14 14 C 1.52992 * 109.47081 * 155.00022 * 11 10 8 15 15 C 1.53938 * 113.73663 * 276.72933 * 14 11 10 16 16 N 1.47959 * 86.18129 * 221.92270 * 15 14 11 17 17 C 1.46900 * 110.99987 * 137.58295 * 16 15 14 18 18 C 1.50698 * 109.47205 * 90.63902 * 17 16 15 19 19 O 1.21300 * 120.00132 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00024 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00127 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99830 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00117 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00051 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99801 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47439 * 90.00061 * 25 23 21 27 27 H 1.48509 * 109.46889 * 209.99479 * 25 23 21 28 28 H 1.48496 * 109.47131 * 329.99349 * 25 23 21 29 29 C 1.47964 * 90.76642 * 24.68855 * 16 15 14 30 30 H 1.09000 * 109.47237 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47168 * 299.99695 * 1 2 3 32 32 H 1.09001 * 109.47416 * 60.00107 * 1 2 3 33 33 H 1.08993 * 109.47504 * 60.00124 * 3 2 1 34 34 H 1.09006 * 109.47289 * 300.00040 * 3 2 1 35 35 H 1.08999 * 109.47460 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.46892 * 299.99723 * 7 6 4 37 37 H 1.08997 * 109.47317 * 59.99434 * 7 6 4 38 38 H 0.97006 * 119.99702 * 0.02562 * 10 8 4 39 39 H 1.09002 * 109.47153 * 299.99573 * 13 11 10 40 40 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 41 41 H 1.09004 * 109.47261 * 59.99745 * 13 11 10 42 42 H 1.08997 * 112.94388 * 48.43858 * 14 11 10 43 43 H 1.09001 * 113.75940 * 336.23740 * 15 14 11 44 44 H 1.08999 * 113.76182 * 107.60866 * 15 14 11 45 45 H 1.09005 * 109.47363 * 210.63730 * 17 16 15 46 46 H 1.08999 * 109.46992 * 330.64173 * 17 16 15 47 47 H 0.97000 * 120.00097 * 0.02562 * 20 18 17 48 48 H 0.97003 * 120.00019 * 180.02562 * 24 23 21 49 49 H 1.08996 * 113.76089 * 220.99405 * 29 16 15 50 50 H 1.08998 * 113.75428 * 89.62674 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8507 0.5686 -0.8427 6 8 3.9658 0.5794 1.2200 7 6 5.1691 -0.1818 1.0987 8 6 4.1478 2.5562 -0.1245 9 8 4.8067 3.0106 0.7866 10 7 3.9633 3.2777 -1.2478 11 6 4.5581 4.6110 -1.3681 12 1 5.5226 4.6257 -0.8604 13 6 3.6288 5.6438 -0.7273 14 6 4.7551 4.9501 -2.8469 15 6 6.0501 4.3741 -3.4475 16 7 6.1983 5.6797 -4.1277 17 6 7.5901 6.1465 -4.0737 18 6 8.3336 5.6508 -5.2871 19 8 7.7603 4.9755 -6.1158 20 7 9.6353 5.9587 -5.4522 21 6 10.3119 5.5073 -6.5558 22 1 9.8016 4.9053 -7.2932 23 6 11.6540 5.8243 -6.7258 24 7 12.2747 6.5572 -5.8289 25 14 12.5756 5.2098 -8.2300 26 1 12.4579 6.2068 -9.3242 27 1 14.0079 5.0169 -7.8883 28 1 11.9940 3.9174 -8.6731 29 6 5.3776 6.3375 -3.0869 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 1.6884 1.8464 -0.8900 35 1 5.4283 -0.6086 2.0676 36 1 5.0199 -0.9846 0.3767 37 1 5.9766 0.4667 0.7592 38 1 3.4360 2.9143 -1.9765 39 1 2.6643 5.6291 -1.2350 40 1 4.0716 6.6358 -0.8164 41 1 3.4884 5.4022 0.3263 42 1 3.8670 4.7579 -3.4488 43 1 6.8257 4.1735 -2.7084 44 1 5.8849 3.5400 -4.1295 45 1 7.6075 7.2363 -4.0570 46 1 8.0677 5.7616 -3.1726 47 1 10.0937 6.4991 -4.7898 48 1 13.2116 6.7788 -5.9477 49 1 4.6751 7.0719 -3.4806 50 1 5.9566 6.7110 -2.2423 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506656004.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:14 Heat of formation + Delta-G solvation = -151.479935 kcal Electronic energy + Delta-G solvation = -30265.530917 eV Core-core repulsion = 25907.429511 eV Total energy + Delta-G solvation = -4358.101406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69661 -40.94132 -39.66746 -38.96297 -38.08340 -36.37411 -35.89864 -33.38637 -33.13477 -31.53377 -30.39568 -27.72789 -27.61057 -27.14466 -26.83523 -25.65042 -24.80016 -22.91754 -21.59360 -20.99954 -20.62022 -19.90625 -18.71770 -18.33005 -17.80412 -17.51610 -17.22880 -16.79369 -16.60726 -16.51751 -16.34767 -16.21713 -15.85899 -15.68247 -15.52615 -15.20383 -15.01837 -14.82140 -14.25409 -14.13688 -14.01130 -13.69418 -13.53267 -13.43269 -13.30081 -12.99294 -12.78394 -12.71313 -12.66245 -12.43684 -12.35845 -12.14503 -12.09725 -11.87263 -11.81330 -11.65397 -11.61093 -11.50638 -10.70897 -10.44196 -10.38943 -10.20561 -10.02355 -9.61592 -8.47711 -5.96687 1.36778 1.38240 1.40048 1.53055 1.87063 2.04629 2.27580 2.66338 2.77826 2.81800 3.18292 3.29962 3.45122 3.62727 3.74929 3.81466 3.92197 4.13112 4.16988 4.23117 4.28968 4.32515 4.35025 4.42668 4.46541 4.48438 4.50888 4.51704 4.53016 4.57281 4.61486 4.76930 4.78744 4.80633 4.84526 4.90547 4.99380 5.18780 5.31476 5.39053 5.43611 5.49022 5.89398 5.90511 6.08164 6.12819 6.46572 6.59477 7.11846 7.12994 7.55391 8.11692 8.69744 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015434 B = 0.001939 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.733547 B =14435.077497 C =15056.672120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.074 3.926 4 C 0.073 3.927 5 H 0.113 0.887 6 O -0.377 6.377 7 C 0.027 3.973 8 C 0.496 3.504 9 O -0.565 6.565 10 N -0.706 5.706 11 C 0.154 3.846 12 H 0.066 0.934 13 C -0.155 4.155 14 C -0.096 4.096 15 C 0.008 3.992 16 N -0.482 5.482 17 C 0.023 3.977 18 C 0.442 3.558 19 O -0.618 6.618 20 N -0.577 5.577 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.016 3.984 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.033 0.967 38 H 0.416 0.584 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.124 0.876 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.108 0.892 46 H 0.074 0.926 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.109 0.891 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.312 -7.277 14.208 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C -0.003 4.003 4 C 0.011 3.989 5 H 0.131 0.869 6 O -0.294 6.294 7 C -0.069 4.069 8 C 0.282 3.718 9 O -0.443 6.443 10 N -0.360 5.360 11 C 0.050 3.950 12 H 0.084 0.916 13 C -0.213 4.213 14 C -0.116 4.116 15 C -0.121 4.121 16 N -0.204 5.204 17 C -0.109 4.109 18 C 0.229 3.771 19 O -0.504 6.504 20 N -0.215 5.215 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.195 1.195 27 H -0.195 1.195 28 H -0.198 1.198 29 C -0.113 4.113 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.254 0.746 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.142 0.858 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.126 0.874 46 H 0.092 0.908 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.128 0.872 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.163 -7.412 13.805 27.965 hybrid contribution 1.417 0.011 -0.055 1.418 sum -21.746 -7.402 13.751 26.772 Atomic orbital electron populations 1.22973 0.78884 1.04081 1.01175 1.87872 1.21810 1.27180 1.95653 1.22500 0.89047 0.85954 1.02799 1.22167 0.95156 0.91102 0.90466 0.86917 1.87967 1.42960 1.67435 1.31053 1.22979 0.85450 0.94387 1.04076 1.21382 0.80558 0.87558 0.82308 1.90718 1.41219 1.71927 1.40392 1.46048 1.53976 1.17660 1.18350 1.20965 0.97274 0.82096 0.94710 0.91617 1.22087 1.00347 0.98761 1.00135 1.23138 0.98219 0.95860 0.94338 1.24017 0.97529 0.94221 0.96311 1.68344 1.07233 1.04326 1.40539 1.22354 0.91321 1.02183 0.95025 1.20825 0.82325 0.84320 0.89643 1.90476 1.68495 1.43908 1.47518 1.41973 1.09145 1.47872 1.22481 1.19652 0.93596 1.31651 1.01388 0.90424 1.26059 0.96987 0.96753 1.01623 1.69673 1.12381 1.37911 1.36247 0.84920 0.77303 0.78561 0.77500 1.19549 1.19507 1.19787 1.24089 0.96617 0.96825 0.93762 0.88477 0.93474 0.92178 0.92446 0.88325 0.88179 0.92005 0.94840 0.74625 0.90278 0.90272 0.93720 0.85773 0.92014 0.90856 0.87383 0.90826 0.77109 0.91315 0.87233 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.33 10.67 -144.33 -1.54 -7.87 16 3 C 0.07 0.98 5.57 71.98 0.40 1.38 16 4 C 0.07 1.26 2.80 29.85 0.08 1.34 16 5 H 0.11 1.54 7.79 -2.39 -0.02 1.52 16 6 O -0.38 -8.62 9.85 -125.58 -1.24 -9.85 16 7 C 0.03 0.49 10.81 113.37 1.23 1.72 16 8 C 0.50 10.17 7.10 87.66 0.62 10.80 16 9 O -0.56 -16.91 16.17 15.96 0.26 -16.66 16 10 N -0.71 -10.31 4.98 -442.56 -2.20 -12.52 16 11 C 0.15 2.56 2.41 44.99 0.11 2.67 16 12 H 0.07 1.47 7.37 -2.39 -0.02 1.45 16 13 C -0.16 -2.11 9.29 71.98 0.67 -1.44 16 14 C -0.10 -1.66 3.49 -10.15 -0.04 -1.70 16 15 C 0.01 0.22 7.51 86.41 0.65 0.87 16 16 N -0.48 -14.84 5.65 -912.34 -5.15 -20.00 16 17 C 0.02 0.80 5.28 85.56 0.45 1.25 16 18 C 0.44 21.60 7.83 87.66 0.69 22.28 16 19 O -0.62 -35.23 16.01 -3.09 -0.05 -35.28 16 20 N -0.58 -30.33 5.29 -306.98 -1.62 -31.96 16 21 C -0.33 -19.29 9.68 84.04 0.81 -18.48 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.92 -50.40 13.05 21.66 0.28 -50.12 16 25 Si 0.99 43.48 29.55 68.60 2.03 45.50 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 29 C 0.02 0.31 6.57 86.41 0.57 0.87 16 30 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.10 0.66 7.77 -2.38 -0.02 0.64 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 0.89 8.09 -2.39 -0.02 0.87 16 37 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.42 3.52 8.31 -92.70 -0.77 2.75 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 0.95 7.43 -2.39 -0.02 0.93 16 41 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.71 7.29 -2.39 -0.02 1.70 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.11 3.30 8.08 -2.38 -0.02 3.28 16 46 H 0.07 2.32 7.38 -2.39 -0.02 2.30 16 47 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16 48 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 49 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.08 1.46 7.85 -2.39 -0.02 1.44 16 Total: -1.00 -81.12 417.65 -1.83 -82.95 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -0.55 Total: 33.09 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 7.96 Total: 22.70 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -8.70 Total: -114.58 kcal Atomic # 8 Polarization: -67.09 SS G_CDS: -2.57 Total: -69.66 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -81.12 -1.83 -82.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506656004.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.530 kcal (2) G-P(sol) polarization free energy of solvation -81.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds