Wall clock time and date at job start Wed Apr 1 2020 02:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00210 * 2 1 4 4 C 1.53000 * 109.47562 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46548 * 305.00352 * 4 3 2 6 6 O 1.42899 * 109.46801 * 64.99720 * 4 3 2 7 7 C 1.42901 * 114.00174 * 269.99792 * 6 4 3 8 8 C 1.50699 * 109.47262 * 185.00161 * 4 3 2 9 9 O 1.21279 * 119.99997 * 244.99983 * 8 4 3 10 10 N 1.34777 * 120.00179 * 64.99633 * 8 4 3 11 11 C 1.46497 * 120.00376 * 179.97438 * 10 8 4 12 12 H 1.09002 * 109.46725 * 35.00314 * 11 10 8 13 13 C 1.52997 * 109.47188 * 275.00479 * 11 10 8 14 14 C 1.52992 * 109.47081 * 155.00022 * 11 10 8 15 15 C 1.53940 * 113.73755 * 278.76602 * 14 11 10 16 16 N 1.48187 * 86.10134 * 221.95864 * 15 14 11 17 17 C 1.46909 * 111.06717 * 137.52429 * 16 15 14 18 18 C 1.50693 * 109.47055 * 90.56219 * 17 16 15 19 19 O 1.21292 * 120.00669 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99770 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00058 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00142 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00028 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99855 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00060 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47126 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46445 * 120.00353 * 25 23 21 28 28 H 1.48495 * 109.47307 * 240.00444 * 25 23 21 29 29 C 1.47951 * 90.79933 * 24.60178 * 16 15 14 30 30 H 1.08996 * 109.46991 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46959 * 299.99741 * 1 2 3 32 32 H 1.08998 * 109.47669 * 60.00020 * 1 2 3 33 33 H 1.08999 * 109.46945 * 59.99774 * 3 2 1 34 34 H 1.09000 * 109.46758 * 300.00380 * 3 2 1 35 35 H 1.08994 * 109.47321 * 300.00341 * 7 6 4 36 36 H 1.08995 * 109.46484 * 60.00866 * 7 6 4 37 37 H 1.08996 * 109.46654 * 180.02562 * 7 6 4 38 38 H 0.97006 * 119.99702 * 0.02562 * 10 8 4 39 39 H 1.09002 * 109.47153 * 299.99573 * 13 11 10 40 40 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 41 41 H 1.09004 * 109.47261 * 59.99745 * 13 11 10 42 42 H 1.08997 * 112.94423 * 50.33745 * 14 11 10 43 43 H 1.09002 * 113.75640 * 336.24285 * 15 14 11 44 44 H 1.09003 * 113.75405 * 107.60436 * 15 14 11 45 45 H 1.08994 * 109.47018 * 210.56817 * 17 16 15 46 46 H 1.09000 * 109.46792 * 330.56144 * 17 16 15 47 47 H 0.97001 * 120.00239 * 0.02562 * 20 18 17 48 48 H 0.97003 * 119.99718 * 179.97438 * 24 23 21 49 49 H 1.09004 * 113.75858 * 221.08298 * 29 16 15 50 50 H 1.09001 * 113.76044 * 89.72283 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8514 0.5682 0.8409 6 8 3.9648 0.5797 -1.2220 7 6 4.0463 -0.8459 -1.1672 8 6 4.1480 2.5560 0.1232 9 8 4.8062 3.0107 -0.7883 10 7 3.9644 3.2772 1.2469 11 6 4.5603 4.6100 1.3676 12 1 4.5519 5.1011 0.3946 13 6 6.0027 4.4810 1.8613 14 6 3.7520 5.4415 2.3656 15 6 2.4814 6.0686 1.7639 16 7 2.8454 7.2877 2.5236 17 6 2.6476 8.4953 1.7106 18 6 1.2497 9.0179 1.9193 19 8 0.4927 8.4416 2.6717 20 7 0.8409 10.1264 1.2708 21 6 -0.4306 10.6023 1.4610 22 1 -1.1046 10.0891 2.1308 23 6 -0.8522 11.7448 0.7919 24 7 -0.0322 12.3689 -0.0236 25 14 -2.5851 12.3928 1.0506 26 1 -3.3034 11.5159 2.0099 27 1 -2.5212 13.7732 1.5944 28 1 -3.3079 12.4047 -0.2465 29 6 4.2682 6.8821 2.5331 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 4.7575 -1.1398 -0.3953 36 1 3.0646 -1.2571 -0.9323 37 1 4.3794 -1.2281 -2.1321 38 1 3.4382 2.9133 1.9761 39 1 6.0111 3.9898 2.8344 40 1 6.4461 5.4727 1.9507 41 1 6.5785 3.8885 1.1503 42 1 3.5812 4.9242 3.3096 43 1 2.5244 6.1959 0.6822 44 1 1.5576 5.5987 2.1017 45 1 3.3685 9.2563 2.0092 46 1 2.7912 8.2520 0.6579 47 1 1.4464 10.5876 0.6694 48 1 -0.3267 13.1663 -0.4909 49 1 4.7695 7.0611 3.4844 50 1 4.8349 7.2479 1.6769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506656005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:19 Heat of formation + Delta-G solvation = -121.080648 kcal Electronic energy + Delta-G solvation = -30404.469170 eV Core-core repulsion = 26047.685976 eV Total energy + Delta-G solvation = -4356.783194 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.74223 -39.88235 -38.49717 -37.76168 -37.25918 -35.42997 -33.87184 -32.36418 -31.24700 -30.51648 -29.33347 -27.42070 -26.45845 -26.13086 -25.57747 -24.47015 -23.76158 -21.88264 -20.80045 -19.70155 -19.20086 -18.00953 -17.74986 -17.52989 -16.92595 -16.40684 -16.15993 -16.05908 -15.67963 -15.26905 -15.20023 -14.95178 -14.63765 -14.53362 -14.30896 -14.19032 -13.73580 -13.47640 -13.34720 -13.05739 -12.93718 -12.74908 -12.58196 -12.36773 -12.22537 -11.93828 -11.83061 -11.62552 -11.55848 -11.38567 -11.09184 -10.99232 -10.70196 -10.69003 -10.33849 -10.29160 -10.20753 -10.15761 -9.78707 -9.49693 -9.40332 -8.71279 -8.16133 -7.94375 -6.40144 -3.80819 2.18968 2.48285 3.16871 3.27073 3.27964 3.34265 3.63865 3.88247 3.94410 4.20918 4.29034 4.35642 4.46947 4.50938 4.57495 4.82968 4.94271 4.95916 4.99587 5.01027 5.05339 5.13627 5.18246 5.21676 5.22676 5.26680 5.30408 5.36374 5.42755 5.48847 5.51440 5.63128 5.68595 5.73067 5.75305 5.89149 5.99092 6.08009 6.26752 6.29088 6.57679 6.59104 6.66725 7.15279 7.18184 7.56642 7.89999 8.07995 8.64021 9.20203 9.56791 10.09123 10.77850 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.002161 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.334974 B =12956.620376 C =14340.190216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.389 6.389 3 C 0.043 3.957 4 C 0.077 3.923 5 H 0.094 0.906 6 O -0.355 6.355 7 C 0.029 3.971 8 C 0.519 3.481 9 O -0.510 6.510 10 N -0.720 5.720 11 C 0.151 3.849 12 H 0.091 0.909 13 C -0.162 4.162 14 C -0.126 4.126 15 C 0.017 3.983 16 N -0.449 5.449 17 C 0.009 3.991 18 C 0.447 3.553 19 O -0.577 6.577 20 N -0.568 5.568 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.020 3.980 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.010 3.990 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.401 0.599 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.058 0.942 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.091 0.909 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.176 -24.132 1.363 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C -0.034 4.034 4 C 0.015 3.985 5 H 0.112 0.888 6 O -0.273 6.273 7 C -0.068 4.068 8 C 0.303 3.697 9 O -0.384 6.384 10 N -0.374 5.374 11 C 0.046 3.954 12 H 0.109 0.891 13 C -0.220 4.220 14 C -0.145 4.145 15 C -0.112 4.112 16 N -0.171 5.171 17 C -0.123 4.123 18 C 0.232 3.768 19 O -0.460 6.460 20 N -0.205 5.205 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.181 4.181 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.193 1.193 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.119 4.119 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.235 0.765 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.076 0.924 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.110 0.890 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.921 -23.894 1.511 25.916 hybrid contribution -0.657 0.571 -0.561 1.035 sum 9.265 -23.323 0.951 25.114 Atomic orbital electron populations 1.22800 0.80217 1.02993 1.00606 1.87817 1.20431 1.26971 1.95555 1.23046 0.92273 0.85926 1.02197 1.21909 0.92649 0.93526 0.90398 0.88820 1.88024 1.87756 1.20277 1.31201 1.22956 1.01226 0.80204 1.02388 1.20069 0.81082 0.86055 0.82520 1.90750 1.38719 1.70246 1.38686 1.46036 1.54865 1.18177 1.18332 1.21100 0.92502 0.81852 0.99908 0.89141 1.22146 0.95663 1.02777 1.01433 1.23327 0.96353 0.95492 0.99320 1.24026 0.98264 0.91920 0.96975 1.68409 1.08404 1.00425 1.39883 1.22482 0.98416 0.94891 0.96465 1.19691 0.88514 0.83530 0.85076 1.90513 1.55767 1.59813 1.39894 1.41892 1.14188 1.23771 1.40653 1.19733 0.89521 1.08320 1.25086 0.87943 1.25262 0.99891 0.96618 0.96308 1.69623 1.36082 1.20005 1.28718 0.85808 0.81818 0.78624 0.78141 1.19254 1.20757 1.20784 1.23953 0.92638 0.92948 1.02376 0.89380 0.93602 0.93655 0.91582 0.91438 0.94204 0.92144 0.89481 0.76453 0.92255 0.91159 0.92130 0.87721 0.91365 0.89153 0.89390 0.92432 0.77553 0.91963 0.89025 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.28 8.83 -40.08 -0.35 -3.63 16 3 C 0.04 0.36 5.57 37.16 0.21 0.56 16 4 C 0.08 0.71 2.91 -27.88 -0.08 0.63 16 5 H 0.09 0.64 7.79 -51.93 -0.40 0.24 16 6 O -0.36 -4.08 9.88 -59.70 -0.59 -4.67 16 7 C 0.03 0.23 10.71 101.05 1.08 1.31 16 8 C 0.52 5.67 7.14 -10.99 -0.08 5.59 16 9 O -0.51 -7.86 16.17 -14.30 -0.23 -8.09 16 10 N -0.72 -5.98 4.98 -53.81 -0.27 -6.25 16 11 C 0.15 1.40 2.38 -67.94 -0.16 1.24 16 12 H 0.09 1.04 7.42 -51.93 -0.39 0.66 16 13 C -0.16 -1.33 9.31 37.16 0.35 -0.99 16 14 C -0.13 -1.23 3.46 -89.69 -0.31 -1.54 16 15 C 0.02 0.23 7.53 -2.63 -0.02 0.21 16 16 N -0.45 -7.17 5.65 -239.51 -1.35 -8.53 16 17 C 0.01 0.17 5.28 -4.97 -0.03 0.14 16 18 C 0.45 10.73 7.83 -10.99 -0.09 10.64 16 19 O -0.58 -15.94 16.01 5.55 0.09 -15.85 16 20 N -0.57 -14.61 5.29 -10.97 -0.06 -14.67 16 21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.56 5.50 -17.46 -0.10 0.46 16 24 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 25 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 C 0.01 0.12 6.65 -2.76 -0.02 0.10 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.43 7.77 -51.93 -0.40 0.02 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 36 H 0.06 0.46 6.40 -51.93 -0.33 0.13 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.40 2.27 8.31 -40.82 -0.34 1.93 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.53 7.52 -51.93 -0.39 0.14 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.94 7.33 -51.93 -0.38 0.56 16 44 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 46 H 0.06 0.93 7.39 -51.93 -0.38 0.55 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.07 0.72 7.88 -51.93 -0.41 0.31 16 LS Contribution 414.43 15.07 6.25 6.25 Total: -1.00 -36.19 414.43 -7.42 -43.61 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -8.33 Total: 8.60 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 1.72 Total: 11.13 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.95 Total: -53.55 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -1.09 Total: -32.24 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -36.19 -7.42 -43.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506656005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.467 kcal (2) G-P(sol) polarization free energy of solvation -36.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds