Wall clock time and date at job start Wed Apr 1 2020 02:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00210 * 2 1 4 4 C 1.53000 * 109.47562 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.46548 * 305.00352 * 4 3 2 6 6 O 1.42899 * 109.46801 * 64.99720 * 4 3 2 7 7 C 1.42901 * 114.00174 * 269.99792 * 6 4 3 8 8 C 1.50699 * 109.47262 * 185.00161 * 4 3 2 9 9 O 1.21279 * 119.99997 * 244.99983 * 8 4 3 10 10 N 1.34777 * 120.00179 * 64.99633 * 8 4 3 11 11 C 1.46497 * 120.00376 * 179.97438 * 10 8 4 12 12 H 1.09002 * 109.46725 * 35.00314 * 11 10 8 13 13 C 1.52997 * 109.47188 * 275.00479 * 11 10 8 14 14 C 1.52992 * 109.47081 * 155.00022 * 11 10 8 15 15 C 1.53940 * 113.73755 * 278.76602 * 14 11 10 16 16 N 1.48187 * 86.10134 * 221.95864 * 15 14 11 17 17 C 1.46909 * 111.06717 * 137.52429 * 16 15 14 18 18 C 1.50693 * 109.47055 * 90.56219 * 17 16 15 19 19 O 1.21292 * 120.00669 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99770 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00058 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00142 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00028 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99855 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00060 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47126 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46445 * 120.00353 * 25 23 21 28 28 H 1.48495 * 109.47307 * 240.00444 * 25 23 21 29 29 C 1.47951 * 90.79933 * 24.60178 * 16 15 14 30 30 H 1.08996 * 109.46991 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.46959 * 299.99741 * 1 2 3 32 32 H 1.08998 * 109.47669 * 60.00020 * 1 2 3 33 33 H 1.08999 * 109.46945 * 59.99774 * 3 2 1 34 34 H 1.09000 * 109.46758 * 300.00380 * 3 2 1 35 35 H 1.08994 * 109.47321 * 300.00341 * 7 6 4 36 36 H 1.08995 * 109.46484 * 60.00866 * 7 6 4 37 37 H 1.08996 * 109.46654 * 180.02562 * 7 6 4 38 38 H 0.97006 * 119.99702 * 0.02562 * 10 8 4 39 39 H 1.09002 * 109.47153 * 299.99573 * 13 11 10 40 40 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 41 41 H 1.09004 * 109.47261 * 59.99745 * 13 11 10 42 42 H 1.08997 * 112.94423 * 50.33745 * 14 11 10 43 43 H 1.09002 * 113.75640 * 336.24285 * 15 14 11 44 44 H 1.09003 * 113.75405 * 107.60436 * 15 14 11 45 45 H 1.08994 * 109.47018 * 210.56817 * 17 16 15 46 46 H 1.09000 * 109.46792 * 330.56144 * 17 16 15 47 47 H 0.97001 * 120.00239 * 0.02562 * 20 18 17 48 48 H 0.97003 * 119.99718 * 179.97438 * 24 23 21 49 49 H 1.09004 * 113.75858 * 221.08298 * 29 16 15 50 50 H 1.09001 * 113.76044 * 89.72283 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8514 0.5682 0.8409 6 8 3.9648 0.5797 -1.2220 7 6 4.0463 -0.8459 -1.1672 8 6 4.1480 2.5560 0.1232 9 8 4.8062 3.0107 -0.7883 10 7 3.9644 3.2772 1.2469 11 6 4.5603 4.6100 1.3676 12 1 4.5519 5.1011 0.3946 13 6 6.0027 4.4810 1.8613 14 6 3.7520 5.4415 2.3656 15 6 2.4814 6.0686 1.7639 16 7 2.8454 7.2877 2.5236 17 6 2.6476 8.4953 1.7106 18 6 1.2497 9.0179 1.9193 19 8 0.4927 8.4416 2.6717 20 7 0.8409 10.1264 1.2708 21 6 -0.4306 10.6023 1.4610 22 1 -1.1046 10.0891 2.1308 23 6 -0.8522 11.7448 0.7919 24 7 -0.0322 12.3689 -0.0236 25 14 -2.5851 12.3928 1.0506 26 1 -3.3034 11.5159 2.0099 27 1 -2.5212 13.7732 1.5944 28 1 -3.3079 12.4047 -0.2465 29 6 4.2682 6.8821 2.5331 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 4.7575 -1.1398 -0.3953 36 1 3.0646 -1.2571 -0.9323 37 1 4.3794 -1.2281 -2.1321 38 1 3.4382 2.9133 1.9761 39 1 6.0111 3.9898 2.8344 40 1 6.4461 5.4727 1.9507 41 1 6.5785 3.8885 1.1503 42 1 3.5812 4.9242 3.3096 43 1 2.5244 6.1959 0.6822 44 1 1.5576 5.5987 2.1017 45 1 3.3685 9.2563 2.0092 46 1 2.7912 8.2520 0.6579 47 1 1.4464 10.5876 0.6694 48 1 -0.3267 13.1663 -0.4909 49 1 4.7695 7.0611 3.4844 50 1 4.8349 7.2479 1.6769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506656005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:18 Heat of formation + Delta-G solvation = -150.905232 kcal Electronic energy + Delta-G solvation = -30405.762461 eV Core-core repulsion = 26047.685976 eV Total energy + Delta-G solvation = -4358.076485 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.66871 -40.89934 -39.67830 -39.12632 -37.96558 -36.39120 -35.89667 -33.37980 -33.12678 -31.48429 -30.33836 -28.00031 -27.59609 -27.00344 -26.78575 -25.68003 -24.75836 -22.88459 -21.62008 -20.99404 -20.60743 -19.90364 -18.67536 -18.28681 -17.79957 -17.64095 -17.18445 -16.87350 -16.59533 -16.47588 -16.32193 -16.27198 -15.88409 -15.65485 -15.47196 -15.16695 -14.95905 -14.77390 -14.30969 -14.08796 -13.96459 -13.67359 -13.53950 -13.52000 -13.38549 -12.99511 -12.84591 -12.73392 -12.66648 -12.45066 -12.42120 -12.18490 -12.13397 -11.82232 -11.80946 -11.65010 -11.51171 -11.06677 -10.82844 -10.52752 -10.38352 -10.21682 -10.02027 -9.60917 -8.47687 -5.96531 1.35403 1.37406 1.40146 1.54639 1.74326 2.04923 2.27624 2.65444 2.78181 2.96452 3.18520 3.32647 3.46697 3.63708 3.67814 3.79753 3.92431 4.13632 4.18024 4.23199 4.25096 4.32619 4.39805 4.43492 4.47751 4.50367 4.51633 4.53438 4.53708 4.59924 4.68615 4.77749 4.80891 4.84766 4.85279 4.94375 4.99973 5.19468 5.32064 5.39503 5.43929 5.48557 5.89908 5.98408 6.03658 6.08687 6.46845 6.59690 7.12174 7.13088 7.55777 8.11952 8.70085 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012271 B = 0.002161 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.334974 B =12956.620376 C =14340.190216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.046 3.954 4 C 0.079 3.921 5 H 0.122 0.878 6 O -0.389 6.389 7 C 0.026 3.974 8 C 0.519 3.481 9 O -0.562 6.562 10 N -0.705 5.705 11 C 0.156 3.844 12 H 0.067 0.933 13 C -0.156 4.156 14 C -0.097 4.097 15 C 0.009 3.991 16 N -0.482 5.482 17 C 0.023 3.977 18 C 0.442 3.558 19 O -0.618 6.618 20 N -0.578 5.578 21 C -0.331 4.331 22 H 0.078 0.922 23 C -0.016 4.016 24 N -0.922 5.922 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.271 1.271 29 C 0.016 3.984 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.417 0.583 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.124 0.876 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.108 0.892 46 H 0.074 0.926 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.109 0.891 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.780 -24.898 2.470 27.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.031 4.031 4 C 0.017 3.983 5 H 0.139 0.861 6 O -0.308 6.308 7 C -0.069 4.069 8 C 0.304 3.696 9 O -0.439 6.439 10 N -0.359 5.359 11 C 0.051 3.949 12 H 0.085 0.915 13 C -0.214 4.214 14 C -0.116 4.116 15 C -0.120 4.120 16 N -0.204 5.204 17 C -0.109 4.109 18 C 0.230 3.770 19 O -0.503 6.503 20 N -0.216 5.216 21 C -0.461 4.461 22 H 0.096 0.904 23 C -0.215 4.215 24 N -0.563 5.563 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.196 1.196 29 C -0.113 4.113 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.254 0.746 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.142 0.858 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.126 0.874 46 H 0.092 0.908 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.128 0.872 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.536 -24.670 2.643 26.955 hybrid contribution -0.850 0.763 -0.886 1.445 sum 9.686 -23.906 1.757 25.854 Atomic orbital electron populations 1.22956 0.79203 1.04149 1.00815 1.87794 1.21525 1.26819 1.95610 1.22990 0.91813 0.86092 1.02231 1.21977 0.92928 0.92659 0.90700 0.86095 1.87982 1.88065 1.22070 1.32641 1.23082 1.01785 0.78648 1.03412 1.20431 0.80295 0.86652 0.82196 1.90726 1.41197 1.71497 1.40516 1.45915 1.54242 1.17589 1.18150 1.20980 0.93394 0.81906 0.98639 0.91455 1.22092 0.94140 1.03367 1.01791 1.23137 0.93688 0.95124 0.99625 1.24051 0.99516 0.91830 0.96628 1.68378 1.11911 1.00075 1.40085 1.22353 0.94233 0.96378 0.97953 1.20819 0.90606 0.82284 0.83331 1.90473 1.57736 1.60741 1.41390 1.41986 1.13699 1.24606 1.41269 1.19681 0.90694 1.09536 1.26192 0.90418 1.26066 1.03695 0.96187 0.95547 1.69684 1.37587 1.20256 1.28775 0.84864 0.77051 0.78085 0.78291 1.19754 1.19526 1.19595 1.24080 0.90247 0.93041 1.03930 0.87824 0.92745 0.94100 0.89553 0.93405 0.92679 0.91987 0.88851 0.74570 0.90372 0.90155 0.93725 0.85763 0.91975 0.90672 0.87401 0.90815 0.77117 0.91329 0.87240 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.40 -6.23 8.83 -144.34 -1.27 -7.51 16 3 C 0.05 0.73 5.57 71.98 0.40 1.13 16 4 C 0.08 1.37 2.91 29.85 0.09 1.46 16 5 H 0.12 1.38 7.79 -2.39 -0.02 1.36 16 6 O -0.39 -8.86 9.88 -125.59 -1.24 -10.11 16 7 C 0.03 0.39 10.71 113.37 1.21 1.61 16 8 C 0.52 11.05 7.14 87.66 0.63 11.68 16 9 O -0.56 -17.63 16.17 15.96 0.26 -17.37 16 10 N -0.71 -10.57 4.98 -442.56 -2.20 -12.77 16 11 C 0.16 2.61 2.38 44.99 0.11 2.72 16 12 H 0.07 1.51 7.42 -2.39 -0.02 1.49 16 13 C -0.16 -2.18 9.31 71.98 0.67 -1.51 16 14 C -0.10 -1.67 3.46 -10.15 -0.04 -1.70 16 15 C 0.01 0.23 7.53 86.37 0.65 0.88 16 16 N -0.48 -14.77 5.65 -911.68 -5.15 -19.92 16 17 C 0.02 0.79 5.28 85.55 0.45 1.24 16 18 C 0.44 21.58 7.83 87.65 0.69 22.26 16 19 O -0.62 -35.05 16.01 -3.07 -0.05 -35.10 16 20 N -0.58 -30.36 5.29 -306.99 -1.62 -31.98 16 21 C -0.33 -19.17 9.68 84.04 0.81 -18.35 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 24 N -0.92 -50.51 13.05 21.66 0.28 -50.23 16 25 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 C 0.02 0.31 6.65 86.41 0.57 0.88 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.09 0.97 7.77 -2.39 -0.02 0.95 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.63 8.08 -2.39 -0.02 0.61 16 36 H 0.06 0.89 6.40 -2.39 -0.02 0.87 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.42 3.64 8.31 -92.70 -0.77 2.87 16 39 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 0.98 7.52 -2.39 -0.02 0.96 16 41 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.71 7.33 -2.39 -0.02 1.69 16 44 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.11 3.30 8.08 -2.39 -0.02 3.28 16 46 H 0.07 2.32 7.39 -2.39 -0.02 2.30 16 47 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 48 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 49 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.08 1.47 7.88 -2.39 -0.02 1.45 16 Total: -1.00 -80.81 414.43 -1.56 -82.37 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -0.55 Total: 33.68 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: 7.96 Total: 23.44 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -8.69 Total: -114.90 kcal Atomic # 8 Polarization: -67.78 SS G_CDS: -2.31 Total: -70.09 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -80.81 -1.56 -82.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506656005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.533 kcal (2) G-P(sol) polarization free energy of solvation -80.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds