Wall clock time and date at job start Wed Apr 1 2020 02:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36933 * 119.99609 * 2 1 4 4 H 1.08007 * 120.00117 * 202.68081 * 3 2 1 5 5 C 1.38807 * 120.00475 * 22.67895 * 3 2 1 6 6 N 1.31625 * 120.00138 * 11.49198 * 5 3 2 7 7 Si 1.86807 * 120.00219 * 191.49372 * 5 3 2 8 8 H 1.48500 * 109.47287 * 90.00015 * 7 5 3 9 9 H 1.48497 * 109.46845 * 209.99813 * 7 5 3 10 10 H 1.48495 * 109.46891 * 329.99619 * 7 5 3 11 11 C 1.46497 * 120.00105 * 179.97438 * 2 1 3 12 12 C 1.53008 * 109.46989 * 270.00036 * 11 2 1 13 13 O 1.42891 * 109.46974 * 64.99969 * 12 11 2 14 14 C 1.42904 * 113.99973 * 179.97438 * 13 12 11 15 15 C 1.52994 * 109.47370 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47100 * 65.00597 * 15 14 13 17 17 C 1.46503 * 119.99820 * 269.99926 * 16 15 14 18 18 C 1.34772 * 120.00204 * 89.99784 * 16 15 14 19 19 O 1.21281 * 119.99968 * 0.02562 * 18 16 15 20 20 C 1.50700 * 120.00159 * 180.02562 * 18 16 15 21 21 N 1.46501 * 109.47174 * 180.02562 * 20 18 16 22 22 C 1.46095 * 118.72543 * 269.72832 * 21 20 18 23 23 C 1.53210 * 109.82097 * 161.46701 * 22 21 20 24 24 O 1.43246 * 108.51397 * 49.54335 * 23 22 21 25 25 C 1.42967 * 112.98451 * 291.45666 * 24 23 22 26 26 C 1.33874 * 118.73306 * 89.99734 * 21 20 18 27 27 O 1.21285 * 118.82757 * 1.88174 * 26 21 20 28 28 H 1.09001 * 109.47370 * 273.93405 * 1 2 3 29 29 H 1.09000 * 109.47494 * 33.93199 * 1 2 3 30 30 H 1.08997 * 109.47293 * 153.93676 * 1 2 3 31 31 H 0.96999 * 120.00154 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.46916 * 150.00058 * 11 2 1 33 33 H 1.08996 * 109.47333 * 29.99586 * 11 2 1 34 34 H 1.08996 * 109.46745 * 304.99982 * 12 11 2 35 35 H 1.08996 * 109.46890 * 185.00095 * 12 11 2 36 36 H 1.09003 * 109.46356 * 60.00742 * 14 13 12 37 37 H 1.08996 * 109.47383 * 300.00686 * 14 13 12 38 38 H 1.09002 * 109.47279 * 305.00689 * 15 14 13 39 39 H 1.09002 * 109.47800 * 185.00396 * 15 14 13 40 40 H 1.08994 * 109.47665 * 269.99375 * 17 16 15 41 41 H 1.09003 * 109.47264 * 29.99947 * 17 16 15 42 42 H 1.09012 * 109.46959 * 149.99611 * 17 16 15 43 43 H 1.09007 * 109.46635 * 299.99455 * 20 18 16 44 44 H 1.09001 * 109.47702 * 59.99586 * 20 18 16 45 45 H 1.08996 * 109.39575 * 281.77893 * 22 21 20 46 46 H 1.09002 * 109.39165 * 41.50433 * 22 21 20 47 47 H 1.08997 * 109.82995 * 289.74735 * 23 22 21 48 48 H 1.09002 * 109.66939 * 169.23784 * 23 22 21 49 49 H 1.09004 * 109.41605 * 289.49587 * 25 24 23 50 50 H 1.09000 * 109.36171 * 169.66840 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1495 1.1859 0.0000 4 1 3.1670 1.2222 -0.3607 5 6 1.5360 2.3416 0.4635 6 7 0.3910 2.2656 1.1081 7 14 2.3354 4.0047 0.1723 8 1 1.8568 4.5650 -1.1170 9 1 1.9739 4.9279 1.2778 10 1 3.8107 3.8432 0.1246 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4434 13 8 1.2060 -1.9925 2.0823 14 6 1.3324 -2.4159 3.4413 15 6 -0.0566 -2.6886 4.0218 16 7 -0.6662 -3.8201 3.3187 17 6 -1.4805 -3.5869 2.1233 18 6 -0.4778 -5.0755 3.7714 19 8 0.1959 -5.2685 4.7612 20 6 -1.1044 -6.2394 3.0477 21 7 -0.7535 -7.4862 3.7323 22 6 0.4572 -8.1946 3.3240 23 6 0.8829 -9.1723 4.4241 24 8 -0.2572 -9.9501 4.8076 25 6 -1.2539 -9.1823 5.4867 26 6 -1.5575 -7.9352 4.7039 27 8 -2.5668 -7.3140 4.9616 28 1 -0.3634 0.0705 1.0252 29 1 -0.3634 0.8526 -0.5736 30 1 -0.3634 -0.9231 -0.4515 31 1 -0.0379 3.0732 1.4317 32 1 3.1499 -1.1385 -0.5133 33 1 1.6084 -2.0286 -0.5128 34 1 2.9641 -0.9121 1.9819 35 1 3.0732 -2.6056 1.4450 36 1 1.8210 -1.6331 4.0216 37 1 1.9298 -3.3266 3.4842 38 1 -0.6820 -1.8045 3.8983 39 1 0.0327 -2.9253 5.0821 40 1 -2.5208 -3.4429 2.4147 41 1 -1.1212 -2.6968 1.6069 42 1 -1.4052 -4.4478 1.4588 43 1 -2.1881 -6.1219 3.0405 44 1 -0.7356 -6.2711 2.0225 45 1 0.2622 -8.7435 2.4027 46 1 1.2574 -7.4746 3.1524 47 1 1.2553 -8.6194 5.2864 48 1 1.6649 -9.8313 4.0468 49 1 -0.8885 -8.9088 6.4766 50 1 -2.1618 -9.7770 5.5873 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566059430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:54 Heat of formation + Delta-G solvation = -111.791117 kcal Electronic energy + Delta-G solvation = -31447.412220 eV Core-core repulsion = 27091.031851 eV Total energy + Delta-G solvation = -4356.380369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.16763 -39.66047 -38.00551 -37.51886 -35.87192 -35.43298 -34.95580 -31.65734 -30.96284 -30.29956 -29.08904 -27.99937 -26.70434 -25.94697 -25.71741 -24.27741 -23.02403 -22.64634 -20.34328 -19.81990 -19.10719 -18.07869 -17.52035 -17.34078 -16.78179 -16.31435 -16.24257 -15.88363 -15.68360 -15.50658 -15.16714 -14.82205 -14.62691 -14.33222 -14.00475 -13.79603 -13.51561 -13.41112 -13.36513 -13.02121 -12.96109 -12.44711 -12.34291 -12.16056 -12.15088 -11.97980 -11.71413 -11.45120 -11.36362 -10.96394 -10.94104 -10.84608 -10.76976 -10.51030 -10.18531 -10.09762 -9.92625 -9.81887 -9.79149 -9.07096 -8.93110 -8.62586 -8.50214 -6.69352 -5.68120 -3.13931 2.10495 2.38674 2.53858 3.07389 3.31346 3.38436 3.44728 3.45873 3.92560 4.25249 4.31298 4.41891 4.52622 4.58831 4.68275 4.78775 4.93824 5.00453 5.10272 5.15693 5.20122 5.29473 5.31311 5.38242 5.43777 5.55280 5.61867 5.67109 5.77313 5.77878 5.94932 5.97933 6.10787 6.18110 6.24718 6.31975 6.51762 6.55226 6.76103 6.89700 6.94885 7.34777 7.47846 7.69129 7.80077 7.85274 7.92676 8.09662 8.44116 9.28772 9.92199 10.42329 11.36166 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.026466 B = 0.002156 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.712978 B =12984.741533 C =13276.842523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.596 5.596 3 C -0.255 4.255 4 H 0.066 0.934 5 C 0.002 3.998 6 N -0.904 5.904 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.154 3.846 12 C 0.044 3.956 13 O -0.366 6.366 14 C 0.050 3.950 15 C 0.121 3.879 16 N -0.600 5.600 17 C 0.076 3.924 18 C 0.499 3.501 19 O -0.543 6.543 20 C 0.091 3.909 21 N -0.587 5.587 22 C 0.083 3.917 23 C 0.044 3.956 24 O -0.372 6.372 25 C 0.053 3.947 26 C 0.494 3.506 27 O -0.539 6.539 28 H 0.032 0.968 29 H 0.037 0.963 30 H -0.008 1.008 31 H 0.251 0.749 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.021 0.979 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.068 0.932 48 H 0.117 0.883 49 H 0.093 0.907 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 -23.288 4.498 23.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.319 5.319 3 C -0.385 4.385 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.549 5.549 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.026 3.974 12 C -0.035 4.035 13 O -0.285 6.285 14 C -0.028 4.028 15 C -0.002 4.002 16 N -0.333 5.333 17 C -0.067 4.067 18 C 0.285 3.715 19 O -0.421 6.421 20 C -0.035 4.035 21 N -0.320 5.320 22 C -0.040 4.040 23 C -0.033 4.033 24 O -0.290 6.290 25 C -0.027 4.027 26 C 0.282 3.718 27 O -0.417 6.417 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.011 0.989 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.135 0.865 44 H 0.128 0.872 45 H 0.097 0.903 46 H 0.106 0.894 47 H 0.087 0.913 48 H 0.135 0.865 49 H 0.110 0.890 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.916 -23.112 5.081 23.742 hybrid contribution 0.865 1.462 0.100 1.702 sum -1.051 -21.650 5.181 22.286 Atomic orbital electron populations 1.20688 0.82247 0.94776 0.99233 1.43876 1.02122 1.00221 1.85659 1.19202 0.98144 0.85627 1.35552 0.91607 1.25022 0.97812 0.98371 0.98431 1.70084 1.18084 1.26829 1.39867 0.86293 0.78754 0.84382 0.77305 1.21556 1.21822 1.20635 1.20878 0.96342 0.88803 0.91383 1.23454 0.85306 0.96672 0.98079 1.87922 1.30227 1.87259 1.23119 1.22735 0.96659 0.97844 0.85549 1.21555 0.93694 0.88600 0.96303 1.47759 1.50764 1.05811 1.28960 1.21945 0.94506 1.03901 0.86382 1.21004 0.81051 0.84356 0.85085 1.90660 1.40280 1.84797 1.26345 1.21431 1.03165 0.82611 0.96289 1.47060 1.25188 1.22943 1.36798 1.22232 0.87254 0.95700 0.98864 1.23053 0.88819 0.94243 0.97171 1.88179 1.29237 1.34794 1.76767 1.22818 0.94119 0.90257 0.95472 1.20990 0.83186 0.87540 0.80128 1.90751 1.26468 1.58615 1.65820 0.95015 0.94426 0.98913 0.93914 0.92513 0.93938 0.93505 0.96090 0.92937 0.94307 0.89088 0.89111 0.92585 0.88589 0.91668 0.86480 0.87204 0.90277 0.89370 0.91318 0.86517 0.88963 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.28 8.61 59.84 0.52 4.80 16 2 N -0.60 -14.83 2.89 -181.12 -0.52 -15.35 16 3 C -0.26 -6.95 9.67 -15.06 -0.15 -7.10 16 4 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 5 C 0.00 0.06 5.12 -17.43 -0.09 -0.03 16 6 N -0.90 -26.18 10.62 55.49 0.59 -25.59 16 7 Si 0.90 21.79 29.57 -169.99 -5.03 16.77 16 8 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.15 3.10 6.12 -4.04 -0.02 3.07 16 12 C 0.04 0.83 6.28 37.16 0.23 1.07 16 13 O -0.37 -6.81 8.72 -35.23 -0.31 -7.12 16 14 C 0.05 0.81 6.28 37.15 0.23 1.04 16 15 C 0.12 1.77 5.81 -4.04 -0.02 1.74 16 16 N -0.60 -8.03 2.84 -181.57 -0.52 -8.54 16 17 C 0.08 0.85 10.06 59.85 0.60 1.45 16 18 C 0.50 6.82 7.73 -10.99 -0.08 6.73 16 19 O -0.54 -9.06 16.01 5.56 0.09 -8.97 16 20 C 0.09 0.95 4.35 -5.19 -0.02 0.93 16 21 N -0.59 -6.11 2.32 -175.66 -0.41 -6.52 16 22 C 0.08 0.60 6.63 -4.15 -0.03 0.57 16 23 C 0.04 0.28 6.91 37.27 0.26 0.54 16 24 O -0.37 -3.05 10.85 -35.23 -0.38 -3.43 16 25 C 0.05 0.44 6.98 35.83 0.25 0.69 16 26 C 0.49 5.83 7.58 -11.56 -0.09 5.75 16 27 O -0.54 -8.27 16.36 5.55 0.09 -8.17 16 28 H 0.03 0.84 7.43 -51.93 -0.39 0.45 16 29 H 0.04 0.99 7.20 -51.93 -0.37 0.62 16 30 H -0.01 -0.17 7.85 -51.93 -0.41 -0.57 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.06 1.08 8.03 -51.93 -0.42 0.67 16 33 H 0.04 0.79 7.87 -51.93 -0.41 0.38 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.35 8.07 -51.93 -0.42 0.94 16 39 H 0.09 1.32 7.42 -51.93 -0.39 0.93 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 1.31 7.12 -51.93 -0.37 0.94 16 42 H 0.06 0.56 6.44 -51.92 -0.33 0.23 16 43 H 0.12 1.25 7.20 -51.92 -0.37 0.88 16 44 H 0.11 0.83 7.30 -51.93 -0.38 0.45 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.64 8.13 -51.93 -0.42 0.21 16 47 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 48 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 407.19 15.07 6.14 6.14 Total: -1.00 -35.66 407.19 -7.12 -42.78 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -8.45 Total: -3.24 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: 1.59 Total: 21.26 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.86 Total: -56.00 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.51 Total: -27.70 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.66 -7.12 -42.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566059430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.014 kcal (2) G-P(sol) polarization free energy of solvation -35.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds