Wall clock time and date at job start Wed Apr 1 2020 02:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 113.99821 * 2 1 4 4 H 1.09002 * 109.47167 * 329.99916 * 3 2 1 5 5 C 1.53006 * 109.47421 * 89.99762 * 3 2 1 6 6 C 1.53000 * 109.47405 * 209.99781 * 3 2 1 7 7 C 1.50703 * 109.46912 * 64.99886 * 6 3 2 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 6 3 9 9 N 1.34777 * 120.00161 * 180.02562 * 7 6 3 10 10 C 1.46496 * 120.00271 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47194 * 179.97438 * 10 9 7 12 12 O 1.42904 * 110.62602 * 300.69717 * 11 10 9 13 13 C 1.55137 * 110.70669 * 63.80487 * 11 10 9 14 14 C 1.55114 * 101.55859 * 153.91056 * 13 11 10 15 15 N 1.47844 * 104.90634 * 323.15239 * 14 13 11 16 16 C 1.46895 * 111.00276 * 146.24185 * 15 14 13 17 17 C 1.50699 * 109.47091 * 69.16181 * 16 15 14 18 18 O 1.21292 * 119.99813 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00314 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00261 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00169 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00225 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00062 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00263 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47025 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47510 * 120.00143 * 24 22 20 27 27 H 1.48495 * 109.47181 * 240.00284 * 24 22 20 28 28 C 1.47443 * 108.56289 * 23.97712 * 15 14 13 29 29 H 1.09000 * 109.47385 * 299.99602 * 1 2 3 30 30 H 1.09000 * 109.47106 * 60.00440 * 1 2 3 31 31 H 1.09002 * 109.46966 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46824 * 59.99944 * 5 3 2 33 33 H 1.09001 * 109.47241 * 179.97438 * 5 3 2 34 34 H 1.08996 * 109.46751 * 300.00204 * 5 3 2 35 35 H 1.09002 * 109.47398 * 184.99964 * 6 3 2 36 36 H 1.09001 * 109.47194 * 305.00145 * 6 3 2 37 37 H 0.97005 * 119.99463 * 359.97438 * 9 7 6 38 38 H 1.09002 * 109.47021 * 299.99722 * 10 9 7 39 39 H 1.09001 * 109.47001 * 59.99554 * 10 9 7 40 40 H 0.96697 * 114.00261 * 59.30307 * 12 11 10 41 41 H 1.09004 * 110.98989 * 272.12675 * 13 11 10 42 42 H 1.08994 * 110.99437 * 35.94311 * 13 11 10 43 43 H 1.09000 * 110.42393 * 204.24178 * 14 13 11 44 44 H 1.09000 * 110.22298 * 81.97061 * 14 13 11 45 45 H 1.09001 * 109.47537 * 189.16653 * 16 15 14 46 46 H 1.08999 * 109.47052 * 309.16193 * 16 15 14 47 47 H 0.97007 * 119.99774 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00198 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.89293 * 239.60436 * 28 15 14 50 50 H 1.09001 * 109.88992 * 118.41741 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 -0.5139 5 6 2.2175 1.7715 1.4425 6 6 3.3588 1.2634 -0.7212 7 6 3.1416 0.9237 -2.1733 8 8 2.0187 0.7335 -2.5901 9 7 4.1952 0.8302 -3.0085 10 6 3.9840 0.5005 -4.4201 11 6 5.3327 0.4583 -5.1413 12 8 5.9967 1.7197 -5.0414 13 6 6.2236 -0.6772 -4.5725 14 6 7.1383 -0.9917 -5.7851 15 7 6.2648 -0.8438 -6.9687 16 6 7.0185 -0.3242 -8.1176 17 6 7.9871 -1.3735 -8.5990 18 8 8.0437 -2.4486 -8.0403 19 7 8.7906 -1.1173 -9.6503 20 6 9.6722 -2.0717 -10.0879 21 1 9.7225 -3.0290 -9.5905 22 6 10.5001 -1.8078 -11.1721 23 7 10.4385 -0.6432 -11.7778 24 14 11.7008 -3.1085 -11.7689 25 1 11.5747 -4.3233 -10.9241 26 1 11.3953 -3.4539 -13.1804 27 1 13.0864 -2.5825 -11.6768 28 6 5.1488 0.0541 -6.6192 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 2.8828 1.0776 1.9564 33 1 2.6613 2.7671 1.4425 34 1 1.2567 1.8015 1.9563 35 1 3.8426 2.2371 -0.6443 36 1 3.9931 0.5053 -0.2617 37 1 5.0934 0.9820 -2.6749 38 1 3.4997 -0.4729 -4.4974 39 1 3.3503 1.2591 -4.8795 40 1 6.1697 2.0023 -4.1329 41 1 6.8066 -0.3266 -3.7207 42 1 5.6236 -1.5459 -4.3018 43 1 7.5194 -2.0108 -5.7199 44 1 7.9623 -0.2797 -5.8302 45 1 6.3272 -0.0716 -8.9216 46 1 7.5685 0.5678 -7.8178 47 1 8.7456 -0.2573 -10.0969 48 1 11.0168 -0.4588 -12.5345 49 1 4.1999 -0.4671 -6.7457 50 1 5.1743 0.9411 -7.2522 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569745950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:20 Heat of formation + Delta-G solvation = -161.171449 kcal Electronic energy + Delta-G solvation = -30194.469619 eV Core-core repulsion = 25835.947957 eV Total energy + Delta-G solvation = -4358.521661 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.52498 -39.61128 -38.27360 -37.87280 -35.89199 -34.51828 -33.83157 -33.28097 -31.49942 -31.03744 -29.68596 -28.56278 -27.12099 -26.72996 -25.03376 -23.92638 -22.16543 -21.38041 -20.73989 -20.37722 -19.18892 -18.04173 -17.82398 -17.29755 -16.89070 -16.32180 -15.99200 -15.75802 -15.34501 -15.29317 -15.24662 -14.83575 -14.48992 -14.33379 -14.03619 -13.87569 -13.68241 -13.31824 -13.29650 -13.00865 -12.92251 -12.73189 -12.51978 -12.45215 -12.25097 -11.98941 -11.79158 -11.57587 -11.47193 -11.42655 -11.17681 -11.13853 -11.05575 -10.79433 -10.32519 -10.19828 -10.17044 -10.11472 -9.91679 -9.47386 -9.42070 -8.43446 -7.94675 -7.87768 -6.38464 -3.79098 2.36846 2.75536 3.18326 3.28561 3.35823 3.43086 3.78452 3.94919 4.02292 4.20924 4.26941 4.31458 4.35677 4.45416 4.69197 4.69974 4.86189 4.96896 5.01099 5.09200 5.11638 5.20399 5.21302 5.23153 5.27557 5.34308 5.44978 5.47138 5.47937 5.51969 5.62087 5.66708 5.69676 5.84597 5.89646 5.94818 6.03008 6.11929 6.32652 6.42091 6.88073 7.08126 7.20381 7.23766 7.32399 7.58343 7.91097 8.09970 8.65753 9.21788 9.58606 10.10677 10.79493 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.036492 B = 0.001641 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.099672 B =17054.246977 C =17138.155873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.100 3.900 4 H 0.068 0.932 5 C -0.176 4.176 6 C -0.141 4.141 7 C 0.517 3.483 8 O -0.529 6.529 9 N -0.733 5.733 10 C 0.104 3.896 11 C 0.098 3.902 12 O -0.545 6.545 13 C -0.154 4.154 14 C 0.058 3.942 15 N -0.501 5.501 16 C 0.040 3.960 17 C 0.446 3.554 18 O -0.578 6.578 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.057 3.943 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.396 0.604 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.370 0.630 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.045 0.955 45 H 0.088 0.912 46 H 0.052 0.948 47 H 0.392 0.608 48 H 0.270 0.730 49 H 0.094 0.906 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.049 9.687 24.063 29.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.041 3.959 4 H 0.086 0.914 5 C -0.233 4.233 6 C -0.181 4.181 7 C 0.303 3.697 8 O -0.405 6.405 9 N -0.386 5.386 10 C -0.020 4.020 11 C 0.055 3.945 12 O -0.350 6.350 13 C -0.193 4.193 14 C -0.069 4.069 15 N -0.224 5.224 16 C -0.091 4.091 17 C 0.231 3.769 18 O -0.462 6.462 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.071 4.071 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.230 0.770 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.217 0.783 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.070 0.930 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.112 0.888 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.842 8.185 23.138 29.212 hybrid contribution 1.284 1.137 0.274 1.736 sum -14.559 9.322 23.411 29.102 Atomic orbital electron populations 1.22704 0.80887 1.02579 0.99714 1.87889 1.19914 1.26844 1.94949 1.21774 0.93455 0.85981 0.94681 0.91391 1.22308 1.02717 1.01666 0.96625 1.21868 0.99386 1.04519 0.92372 1.20539 0.84640 0.76606 0.87920 1.90712 1.23282 1.48694 1.77800 1.45947 1.09694 1.73023 1.09939 1.21956 0.97219 1.02512 0.80299 1.22813 0.90173 0.84028 0.97439 1.86667 1.80144 1.36428 1.31770 1.23472 0.98644 0.98630 0.98523 1.23007 0.93967 1.03013 0.86928 1.63363 1.09500 1.44672 1.04893 1.22126 0.96676 0.96149 0.94165 1.19737 0.84405 0.89085 0.83692 1.90502 1.71249 1.25697 1.58734 1.41865 1.33885 1.16782 1.27808 1.19744 1.13551 0.97118 1.12254 0.87896 1.25253 0.98770 0.97374 0.96630 1.69625 1.40139 1.21953 1.22702 0.85806 0.79557 0.80490 0.78515 1.19253 1.20783 1.20831 1.22850 0.96861 0.95903 0.91509 0.94632 0.93541 0.89926 0.91580 0.91450 0.92109 0.87592 0.87849 0.76983 0.89971 0.90554 0.78328 0.90759 0.89552 0.88654 0.93623 0.89391 0.92989 0.77521 0.91987 0.88842 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.82 101.05 1.09 1.39 16 2 O -0.38 -3.72 9.58 -49.66 -0.48 -4.20 16 3 C 0.10 0.72 2.27 -26.73 -0.06 0.66 16 4 H 0.07 0.53 7.60 -51.93 -0.39 0.14 16 5 C -0.18 -0.87 9.53 37.16 0.35 -0.51 16 6 C -0.14 -0.83 5.41 -27.88 -0.15 -0.98 16 7 C 0.52 4.72 7.71 -10.98 -0.08 4.64 16 8 O -0.53 -7.03 15.42 -8.87 -0.14 -7.17 16 9 N -0.73 -5.37 5.17 -60.30 -0.31 -5.68 16 10 C 0.10 0.98 4.72 -4.05 -0.02 0.96 16 11 C 0.10 1.00 0.92 -88.80 -0.08 0.92 16 12 O -0.54 -5.52 13.09 -35.23 -0.46 -5.98 16 13 C -0.15 -1.67 5.83 -24.48 -0.14 -1.81 16 14 C 0.06 0.91 5.74 -2.19 -0.01 0.90 16 15 N -0.50 -8.39 4.86 -232.56 -1.13 -9.52 16 16 C 0.04 0.75 5.05 -4.98 -0.03 0.72 16 17 C 0.45 10.69 7.58 -10.99 -0.08 10.60 16 18 O -0.58 -15.72 14.61 5.55 0.08 -15.64 16 19 N -0.57 -14.57 5.29 -10.97 -0.06 -14.62 16 20 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16 24 Si 0.93 21.22 29.55 -169.99 -5.02 16.20 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 28 C 0.06 0.74 6.23 -2.83 -0.02 0.73 16 29 H 0.04 0.21 7.87 -51.93 -0.41 -0.20 16 30 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 35 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.40 1.78 7.31 -40.82 -0.30 1.48 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.37 2.23 7.93 45.56 0.36 2.59 16 41 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 42 H 0.09 0.94 8.05 -51.93 -0.42 0.53 16 43 H 0.10 1.74 7.38 -51.93 -0.38 1.36 16 44 H 0.05 0.75 7.62 -51.93 -0.40 0.35 16 45 H 0.09 1.48 8.03 -51.93 -0.42 1.06 16 46 H 0.05 0.91 7.85 -51.93 -0.41 0.50 16 47 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.09 1.11 7.82 -51.93 -0.41 0.70 16 50 H 0.07 0.91 7.47 -51.93 -0.39 0.52 16 LS Contribution 408.29 15.07 6.15 6.15 Total: -1.00 -35.83 408.29 -7.71 -43.54 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -7.60 Total: 10.83 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 0.53 Total: 10.18 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.78 Total: -53.90 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.99 Total: -32.99 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.83 -7.71 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569745950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.636 kcal (2) G-P(sol) polarization free energy of solvation -35.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds