Wall clock time and date at job start Wed Apr 1 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00445 * 2 1 4 4 H 1.09001 * 109.46815 * 330.00540 * 3 2 1 5 5 C 1.53006 * 109.47000 * 90.00125 * 3 2 1 6 6 C 1.52997 * 109.47503 * 210.00290 * 3 2 1 7 7 C 1.50695 * 109.46942 * 65.00200 * 6 3 2 8 8 O 1.21283 * 120.00179 * 359.97438 * 7 6 3 9 9 N 1.34779 * 120.00031 * 180.02562 * 7 6 3 10 10 C 1.46494 * 120.00442 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47707 * 179.97438 * 10 9 7 12 12 O 1.42902 * 110.27182 * 62.90852 * 11 10 9 13 13 C 1.54596 * 110.30691 * 300.71933 * 11 10 9 14 14 C 1.54936 * 102.92119 * 219.12195 * 13 11 10 15 15 N 1.48534 * 103.22481 * 37.41391 * 14 13 11 16 16 C 1.46906 * 111.00032 * 200.27657 * 15 14 13 17 17 C 1.50692 * 109.47210 * 307.40126 * 16 15 14 18 18 O 1.21288 * 120.00215 * 359.97438 * 17 16 15 19 19 N 1.34781 * 120.00000 * 179.97438 * 17 16 15 20 20 C 1.37093 * 119.99778 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00622 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99958 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99834 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00297 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47109 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.46850 * 120.00027 * 24 22 20 27 27 H 1.48496 * 109.47174 * 240.00244 * 24 22 20 28 28 C 1.47903 * 105.82222 * 320.79388 * 15 14 13 29 29 H 1.09005 * 109.46658 * 299.99819 * 1 2 3 30 30 H 1.09003 * 109.47234 * 59.99221 * 1 2 3 31 31 H 1.08999 * 109.47748 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47002 * 59.99969 * 5 3 2 33 33 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 34 34 H 1.09000 * 109.47050 * 300.00235 * 5 3 2 35 35 H 1.08998 * 109.47192 * 185.00305 * 6 3 2 36 36 H 1.08998 * 109.46934 * 305.00151 * 6 3 2 37 37 H 0.97004 * 119.99958 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47181 * 299.99905 * 10 9 7 39 39 H 1.09008 * 109.46870 * 59.99784 * 10 9 7 40 40 H 0.96703 * 114.00172 * 300.70517 * 12 11 10 41 41 H 1.09000 * 110.72372 * 337.48228 * 13 11 10 42 42 H 1.09002 * 110.72350 * 100.76383 * 13 11 10 43 43 H 1.08996 * 110.66749 * 278.98055 * 14 13 11 44 44 H 1.08996 * 110.81028 * 155.91671 * 14 13 11 45 45 H 1.09002 * 109.46776 * 67.39750 * 16 15 14 46 46 H 1.08996 * 109.47046 * 187.39520 * 16 15 14 47 47 H 0.97001 * 119.99952 * 359.97438 * 19 17 16 48 48 H 0.96994 * 120.00360 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.91449 * 265.97879 * 28 15 14 50 50 H 1.09001 * 109.91742 * 144.68261 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2178 1.7712 1.4426 6 6 3.3589 1.2632 -0.7213 7 6 3.1415 0.9236 -2.1733 8 8 2.0185 0.7336 -2.5901 9 7 4.1952 0.8301 -3.0086 10 6 3.9840 0.4995 -4.4200 11 6 5.3326 0.4574 -5.1414 12 8 6.1538 -0.5771 -4.5960 13 6 6.0440 1.8254 -5.0292 14 6 6.6831 1.9994 -6.4298 15 7 5.6615 1.4265 -7.3431 16 6 6.2564 1.0610 -8.6357 17 6 7.0045 2.2428 -9.1964 18 8 7.0383 3.2871 -8.5804 19 7 7.6360 2.1395 -10.3827 20 6 8.3161 3.2149 -10.8930 21 1 8.3455 4.1450 -10.3449 22 6 8.9676 3.1083 -12.1158 23 7 8.9314 1.9768 -12.7831 24 14 9.8937 4.5737 -12.8116 25 1 9.7814 5.7205 -11.8748 26 1 11.3242 4.2166 -12.9884 27 1 9.3112 4.9492 -14.1249 28 6 5.1246 0.2348 -6.6508 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.8830 1.0772 1.9564 33 1 2.6608 2.7671 1.4426 34 1 1.2570 1.8013 1.9564 35 1 3.8428 2.2368 -0.6443 36 1 3.9931 0.5050 -0.2618 37 1 5.0934 0.9818 -2.6751 38 1 3.5000 -0.4741 -4.4967 39 1 3.3499 1.2577 -4.8798 40 1 6.3366 -0.4774 -3.6516 41 1 5.3239 2.6196 -4.8324 42 1 6.8114 1.7987 -4.2556 43 1 7.6169 1.4413 -6.4986 44 1 6.8493 3.0536 -6.6514 45 1 6.9454 0.2280 -8.4959 46 1 5.4679 0.7679 -9.3287 47 1 7.6093 1.3043 -10.8752 48 1 9.3865 1.9022 -13.6364 49 1 5.6641 -0.6560 -6.9726 50 1 4.0617 0.1270 -6.8673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569745952.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:28 Heat of formation + Delta-G solvation = -159.142598 kcal Electronic energy + Delta-G solvation = -30267.909214 eV Core-core repulsion = 25909.475530 eV Total energy + Delta-G solvation = -4358.433684 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.48453 -39.58475 -38.32218 -37.89583 -35.88669 -34.48097 -33.90910 -33.23939 -31.53113 -31.05346 -29.58042 -28.49936 -27.09530 -26.70150 -25.02418 -23.90643 -22.12742 -21.47106 -20.60908 -20.28285 -19.28178 -18.01002 -17.81215 -17.24350 -16.84402 -16.27379 -15.97657 -15.63003 -15.46779 -15.39237 -15.14886 -14.78559 -14.53865 -14.31853 -14.04901 -13.78325 -13.68581 -13.32408 -13.25308 -13.04735 -12.97612 -12.75391 -12.43017 -12.37056 -12.21785 -11.87389 -11.76801 -11.65493 -11.56063 -11.21622 -11.17130 -11.10759 -10.99136 -10.84847 -10.36474 -10.25130 -10.11551 -10.04387 -9.87967 -9.51683 -9.35442 -8.41638 -8.05172 -7.93477 -6.44023 -3.84975 2.42832 2.82382 3.14661 3.25532 3.32354 3.46016 3.75438 3.87044 4.13898 4.25247 4.32276 4.36010 4.42365 4.54925 4.69644 4.74165 4.90773 5.01631 5.03760 5.06261 5.12474 5.22927 5.23862 5.26405 5.29219 5.40143 5.48927 5.50916 5.57914 5.58757 5.69542 5.72585 5.73236 5.78529 5.93723 5.95313 6.12032 6.21113 6.24708 6.59788 6.90713 7.10589 7.16397 7.22559 7.39272 7.53287 7.97275 8.03547 8.58769 9.15387 9.51161 10.02446 10.73646 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.031695 B = 0.001691 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.212895 B =16550.053806 C =16821.965978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.378 6.378 3 C 0.099 3.901 4 H 0.069 0.931 5 C -0.175 4.175 6 C -0.141 4.141 7 C 0.516 3.484 8 O -0.530 6.530 9 N -0.733 5.733 10 C 0.103 3.897 11 C 0.111 3.889 12 O -0.550 6.550 13 C -0.152 4.152 14 C 0.041 3.959 15 N -0.492 5.492 16 C 0.035 3.965 17 C 0.442 3.558 18 O -0.582 6.582 19 N -0.561 5.561 20 C -0.300 4.300 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.900 5.900 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.048 3.952 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.396 0.604 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.371 0.629 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.121 0.879 45 H 0.051 0.949 46 H 0.092 0.908 47 H 0.393 0.607 48 H 0.271 0.729 49 H 0.062 0.938 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.561 -4.930 25.497 28.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.297 6.297 3 C 0.041 3.959 4 H 0.087 0.913 5 C -0.233 4.233 6 C -0.181 4.181 7 C 0.303 3.697 8 O -0.405 6.405 9 N -0.386 5.386 10 C -0.021 4.021 11 C 0.070 3.930 12 O -0.355 6.355 13 C -0.190 4.190 14 C -0.086 4.086 15 N -0.217 5.217 16 C -0.096 4.096 17 C 0.228 3.772 18 O -0.467 6.467 19 N -0.197 5.197 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.541 5.541 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.081 4.081 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.230 0.770 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.218 0.782 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.138 0.862 45 H 0.069 0.931 46 H 0.110 0.890 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.601 -4.427 24.649 27.600 hybrid contribution 1.431 -0.079 0.049 1.434 sum -10.170 -4.506 24.698 27.088 Atomic orbital electron populations 1.22702 0.80913 1.02506 0.99768 1.87876 1.19896 1.26930 1.94961 1.21779 0.93505 0.85942 0.94684 0.91324 1.22305 1.02686 1.01691 0.96611 1.21863 0.99321 1.04545 0.92394 1.20530 0.84668 0.76628 0.87921 1.90711 1.23271 1.48720 1.77827 1.45964 1.09718 1.72939 1.09972 1.22064 0.97343 1.02265 0.80404 1.22332 0.88565 0.87800 0.94327 1.86648 1.71412 1.49454 1.28025 1.23298 1.00095 0.96459 0.99174 1.23437 0.92370 1.04172 0.88579 1.64725 1.31963 1.22880 1.02110 1.22124 0.98357 0.96848 0.92293 1.19672 0.84405 0.89492 0.83621 1.90427 1.65565 1.30617 1.60086 1.41855 1.45552 1.14688 1.17590 1.19754 1.27059 0.93351 1.02744 0.87805 1.25279 0.98122 0.98091 0.96443 1.69619 1.43940 1.25063 1.15504 0.85792 0.78777 0.80938 0.78779 1.19223 1.20770 1.20723 1.22836 1.01783 0.94037 0.89454 0.94627 0.93508 0.89989 0.91628 0.91405 0.92133 0.87532 0.87942 0.76956 0.90629 0.89830 0.78190 0.89834 0.90839 0.94237 0.86153 0.93078 0.89025 0.77407 0.91874 0.92000 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.82 101.05 1.09 1.40 16 2 O -0.38 -3.80 9.58 -49.66 -0.48 -4.28 16 3 C 0.10 0.76 2.27 -26.73 -0.06 0.70 16 4 H 0.07 0.58 7.60 -51.93 -0.39 0.19 16 5 C -0.18 -0.93 9.53 37.16 0.35 -0.58 16 6 C -0.14 -0.89 5.41 -27.89 -0.15 -1.05 16 7 C 0.52 5.05 7.71 -10.99 -0.08 4.96 16 8 O -0.53 -7.39 15.42 -8.87 -0.14 -7.52 16 9 N -0.73 -5.90 5.11 -60.30 -0.31 -6.21 16 10 C 0.10 1.06 4.50 -4.04 -0.02 1.04 16 11 C 0.11 1.22 1.05 -89.27 -0.09 1.13 16 12 O -0.55 -5.83 12.95 -35.23 -0.46 -6.29 16 13 C -0.15 -1.75 5.64 -24.87 -0.14 -1.89 16 14 C 0.04 0.68 5.31 -1.90 -0.01 0.67 16 15 N -0.49 -8.21 5.26 -231.90 -1.22 -9.43 16 16 C 0.04 0.64 5.52 -4.98 -0.03 0.61 16 17 C 0.44 10.33 7.49 -10.99 -0.08 10.25 16 18 O -0.58 -15.17 13.09 5.55 0.07 -15.09 16 19 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 23 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 24 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 C 0.05 0.64 6.18 -2.76 -0.02 0.62 16 29 H 0.04 0.22 7.87 -51.93 -0.41 -0.19 16 30 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 35 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.40 2.05 7.33 -40.82 -0.30 1.75 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 40 H 0.37 2.43 8.13 45.56 0.37 2.81 16 41 H 0.08 0.96 7.86 -51.93 -0.41 0.55 16 42 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 43 H 0.04 0.68 8.02 -51.93 -0.42 0.27 16 44 H 0.12 2.36 5.96 -51.93 -0.31 2.05 16 45 H 0.05 0.87 7.81 -51.93 -0.41 0.46 16 46 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 47 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 48 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.06 0.85 7.39 -51.93 -0.38 0.47 16 50 H 0.09 1.10 7.68 -51.93 -0.40 0.70 16 LS Contribution 405.42 15.07 6.11 6.11 Total: -1.00 -34.54 405.42 -7.77 -42.31 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -7.52 Total: 12.44 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 0.52 Total: 9.95 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.86 Total: -53.50 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -1.00 Total: -33.18 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.54 -7.77 -42.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569745952.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.835 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds