Wall clock time and date at job start Wed Apr 1 2020 02:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00189 * 2 1 4 4 H 1.08999 * 109.47290 * 30.00124 * 3 2 1 5 5 C 1.52997 * 109.47151 * 270.00080 * 3 2 1 6 6 C 1.50700 * 109.47115 * 150.00135 * 3 2 1 7 7 O 1.21276 * 120.00226 * 4.99757 * 6 3 2 8 8 N 1.34779 * 119.99974 * 185.00332 * 6 3 2 9 9 C 1.46495 * 120.00053 * 185.21959 * 8 6 3 10 10 C 1.53001 * 109.53695 * 298.83584 * 9 8 6 11 11 O 1.42900 * 109.46852 * 305.28511 * 10 9 8 12 12 C 1.53125 * 109.50531 * 178.73635 * 9 8 6 13 13 C 1.53113 * 109.15862 * 297.71691 * 12 9 8 14 14 C 1.53041 * 109.28074 * 302.34057 * 13 12 9 15 15 N 1.46845 * 109.52159 * 59.17985 * 14 13 12 16 16 C 1.46903 * 111.00244 * 174.16247 * 15 14 13 17 17 C 1.50696 * 109.46873 * 66.04918 * 16 15 14 18 18 O 1.21290 * 120.00228 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99926 * 180.02562 * 17 16 15 20 20 C 1.37094 * 119.99878 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00381 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99860 * 179.72165 * 20 19 17 23 23 N 1.31407 * 120.00191 * 0.26935 * 22 20 19 24 24 Si 1.86799 * 120.00183 * 180.26983 * 22 20 19 25 25 H 1.48501 * 109.47214 * 89.99916 * 24 22 20 26 26 H 1.48500 * 109.47386 * 209.99723 * 24 22 20 27 27 H 1.48500 * 109.47118 * 330.00054 * 24 22 20 28 28 C 1.46847 * 111.20231 * 298.26292 * 15 14 13 29 29 H 1.08997 * 109.46832 * 60.00095 * 1 2 3 30 30 H 1.08999 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46931 * 300.00106 * 1 2 3 32 32 H 1.08996 * 109.47383 * 179.97438 * 5 3 2 33 33 H 1.08999 * 109.47059 * 300.00185 * 5 3 2 34 34 H 1.09000 * 109.47323 * 60.00076 * 5 3 2 35 35 H 0.97005 * 119.99711 * 5.21362 * 8 6 3 36 36 H 1.08997 * 109.46991 * 65.28257 * 10 9 8 37 37 H 1.09002 * 109.47065 * 185.28105 * 10 9 8 38 38 H 0.96707 * 113.99588 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.52190 * 177.80852 * 12 9 8 40 40 H 1.09000 * 109.57149 * 57.64770 * 12 9 8 41 41 H 1.09007 * 109.50224 * 182.40475 * 13 12 9 42 42 H 1.09001 * 109.54137 * 62.30203 * 13 12 9 43 43 H 1.09001 * 109.46278 * 299.16822 * 14 13 12 44 44 H 1.08995 * 109.46523 * 179.19487 * 14 13 12 45 45 H 1.09000 * 109.46657 * 306.04677 * 16 15 14 46 46 H 1.08999 * 109.47116 * 186.04942 * 16 15 14 47 47 H 0.96995 * 120.00043 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00856 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.46304 * 181.75795 * 28 15 14 50 50 H 1.09006 * 109.45984 * 301.72874 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.7897 0.2045 1.0914 8 7 4.0255 2.4040 0.9224 9 6 5.3668 2.3527 1.5093 10 6 5.2913 1.7292 2.9045 11 8 4.3448 2.4487 3.6972 12 6 5.9338 3.7713 1.6134 13 6 6.0622 4.3655 0.2081 14 6 6.9567 3.4614 -0.6431 15 7 6.3710 2.1166 -0.7125 16 6 7.1288 1.2591 -1.6337 17 6 8.5090 1.0208 -1.0775 18 8 8.8299 1.5168 -0.0182 19 7 9.3870 0.2573 -1.7576 20 6 10.6424 0.0400 -1.2514 21 1 10.9279 0.4810 -0.3077 22 6 11.5457 -0.7518 -1.9498 23 7 11.1985 -1.2881 -3.0981 24 14 13.2537 -1.0541 -1.2564 25 1 13.2328 -2.2673 -0.4002 26 1 14.2131 -1.2523 -2.3723 27 1 13.6730 0.1170 -0.4452 28 6 6.2815 1.5069 0.6205 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.6607 2.7673 -1.4425 33 1 2.8829 1.0774 -1.9563 34 1 1.2569 1.8015 -1.9563 35 1 3.6317 3.2584 0.6863 36 1 4.9785 0.6884 2.8208 37 1 6.2723 1.7769 3.3773 38 1 4.2452 2.1079 4.5967 39 1 6.9156 3.7373 2.0857 40 1 5.2635 4.3896 2.2105 41 1 6.5053 5.3594 0.2723 42 1 5.0754 4.4358 -0.2495 43 1 7.9477 3.4031 -0.1928 44 1 7.0386 3.8741 -1.6485 45 1 7.2077 1.7492 -2.6041 46 1 6.6139 0.3054 -1.7490 47 1 9.1305 -0.1390 -2.6049 48 1 11.8291 -1.8406 -3.5859 49 1 5.8730 0.5002 0.5327 50 1 7.2756 1.4579 1.0649 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569890032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:47 Heat of formation + Delta-G solvation = -153.405784 kcal Electronic energy + Delta-G solvation = -32729.283551 eV Core-core repulsion = 28371.098634 eV Total energy + Delta-G solvation = -4358.184917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.62418 -39.12441 -38.11070 -36.98493 -36.30162 -34.42950 -33.70638 -32.50778 -31.70607 -31.28011 -29.91477 -27.37987 -26.95513 -25.62910 -24.66531 -24.25655 -22.80409 -21.49344 -20.50550 -19.31594 -18.97079 -17.86927 -17.53737 -17.24222 -16.84960 -16.03749 -15.59947 -15.45222 -15.26090 -14.98211 -14.72175 -14.65595 -14.42337 -14.07622 -13.87811 -13.73474 -13.46407 -13.24984 -12.98242 -12.85668 -12.80368 -12.46227 -12.44004 -11.96707 -11.95664 -11.74149 -11.59869 -11.34881 -11.26606 -11.21457 -10.97609 -10.60434 -10.42511 -10.36657 -10.25807 -10.21660 -10.12792 -9.88005 -9.48963 -9.17507 -9.08420 -8.73031 -7.99370 -7.35722 -6.44833 -3.86213 2.81686 2.97927 3.14635 3.24088 3.29297 3.83227 3.90475 4.07489 4.15400 4.57530 4.64490 4.75151 4.87774 4.91516 4.99114 5.03685 5.09823 5.17322 5.21385 5.22210 5.43251 5.47728 5.50835 5.55615 5.56358 5.63997 5.71583 5.85278 5.88902 5.98200 6.04671 6.05632 6.07514 6.15899 6.20328 6.27908 6.40879 6.59657 6.62659 6.80470 6.93156 7.39999 7.51306 7.51920 7.63928 7.74598 8.01561 8.47586 8.56363 9.13265 9.50043 10.00380 10.71663 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013461 B = 0.003076 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.552963 B = 9099.778628 C = 9850.495558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.071 3.929 4 H 0.079 0.921 5 C -0.165 4.165 6 C 0.524 3.476 7 O -0.524 6.524 8 N -0.694 5.694 9 C 0.196 3.804 10 C 0.063 3.937 11 O -0.570 6.570 12 C -0.118 4.118 13 C -0.111 4.111 14 C 0.038 3.962 15 N -0.504 5.504 16 C 0.043 3.957 17 C 0.408 3.592 18 O -0.595 6.595 19 N -0.556 5.556 20 C -0.302 4.302 21 H 0.102 0.898 22 C 0.024 3.976 23 N -0.898 5.898 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.270 1.270 28 C 0.026 3.974 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.395 0.605 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.374 0.626 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.393 0.607 48 H 0.272 0.728 49 H 0.084 0.916 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.577 9.601 5.290 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.009 3.991 4 H 0.096 0.904 5 C -0.223 4.223 6 C 0.309 3.691 7 O -0.399 6.399 8 N -0.346 5.346 9 C 0.110 3.890 10 C -0.016 4.016 11 O -0.374 6.374 12 C -0.156 4.156 13 C -0.149 4.149 14 C -0.090 4.090 15 N -0.227 5.227 16 C -0.089 4.089 17 C 0.193 3.807 18 O -0.483 6.483 19 N -0.191 5.191 20 C -0.432 4.432 21 H 0.120 0.880 22 C -0.178 4.178 23 N -0.538 5.538 24 Si 0.756 3.244 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.195 1.195 28 C -0.103 4.103 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.229 0.771 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.220 0.780 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.103 0.897 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.328 9.248 5.360 22.086 hybrid contribution 1.226 -0.298 0.327 1.303 sum -18.102 8.950 5.686 20.979 Atomic orbital electron populations 1.22845 0.81079 1.03029 0.99760 1.88073 1.19229 1.25426 1.94928 1.21942 0.93815 0.86407 0.96916 0.90364 1.22166 1.02823 1.02474 0.94831 1.20080 0.85772 0.84229 0.79033 1.90648 1.69157 1.30090 1.50009 1.45600 1.16872 1.08174 1.63942 1.20372 0.82021 0.96203 0.90444 1.22627 0.91781 0.96569 0.90650 1.86391 1.63813 1.59415 1.27788 1.21787 1.01707 0.94330 0.97739 1.21553 1.00219 0.98256 0.94903 1.22254 0.98234 0.88911 0.99572 1.62335 1.48838 1.02033 1.09451 1.22021 0.91593 0.98622 0.96651 1.21102 0.87783 0.84423 0.87345 1.90366 1.79033 1.54821 1.24046 1.42059 1.12353 1.43217 1.21425 1.19702 0.88436 1.28565 1.06477 0.87993 1.25287 1.00315 0.96524 0.95691 1.69608 1.36929 1.33221 1.14089 0.85870 0.81252 0.78932 0.78302 1.20350 1.20870 1.19458 1.22720 1.00277 0.97828 0.89454 0.93991 0.89337 0.94102 0.90801 0.90680 0.91901 0.77123 0.91173 0.93078 0.77973 0.90402 0.91056 0.91649 0.91986 0.91377 0.91797 0.89445 0.89398 0.77374 0.91762 0.89723 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.36 -4.72 9.89 -55.09 -0.54 -5.26 16 3 C 0.07 0.79 3.13 -27.88 -0.09 0.71 16 4 H 0.08 0.67 7.79 -51.93 -0.40 0.27 16 5 C -0.17 -1.57 9.48 37.16 0.35 -1.22 16 6 C 0.52 7.51 6.58 -10.98 -0.07 7.44 16 7 O -0.52 -9.70 12.82 -14.30 -0.18 -9.88 16 8 N -0.69 -8.61 4.39 -47.53 -0.21 -8.82 16 9 C 0.20 2.76 0.45 -131.74 -0.06 2.70 16 10 C 0.06 0.87 5.65 37.16 0.21 1.08 16 11 O -0.57 -6.81 13.02 -35.23 -0.46 -7.27 16 12 C -0.12 -1.48 4.70 -26.61 -0.13 -1.60 16 13 C -0.11 -1.33 5.91 -26.65 -0.16 -1.49 16 14 C 0.04 0.59 5.10 -3.83 -0.02 0.57 16 15 N -0.50 -8.26 4.71 -236.11 -1.11 -9.38 16 16 C 0.04 0.78 5.86 -4.98 -0.03 0.75 16 17 C 0.41 9.37 7.20 -10.99 -0.08 9.29 16 18 O -0.60 -15.00 11.20 5.55 0.06 -14.93 16 19 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 23 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 24 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 28 C 0.03 0.45 3.51 -3.83 -0.01 0.44 16 29 H 0.04 0.28 7.87 -51.93 -0.41 -0.13 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.48 7.87 -51.93 -0.41 0.07 16 35 H 0.39 3.94 7.49 -40.82 -0.31 3.63 16 36 H 0.07 1.13 6.26 -51.93 -0.33 0.80 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.37 3.00 9.12 45.56 0.42 3.41 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.65 7.08 -51.93 -0.37 0.29 16 43 H 0.07 1.29 6.00 -51.93 -0.31 0.98 16 44 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 45 H 0.09 1.43 8.06 -51.93 -0.42 1.01 16 46 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 47 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.08 1.69 6.24 -51.93 -0.32 1.36 16 50 H 0.09 1.92 5.36 -51.93 -0.28 1.64 16 LS Contribution 392.30 15.07 5.91 5.91 Total: -1.00 -33.58 392.30 -7.29 -40.88 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -7.18 Total: 18.48 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 0.77 Total: 12.05 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.65 Total: -56.01 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.12 Total: -37.35 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.58 -7.29 -40.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569890032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.530 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds