Wall clock time and date at job start Wed Apr 1 2020 02:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00189 * 2 1 4 4 H 1.08999 * 109.47290 * 30.00124 * 3 2 1 5 5 C 1.52997 * 109.47151 * 270.00080 * 3 2 1 6 6 C 1.50700 * 109.47115 * 150.00135 * 3 2 1 7 7 O 1.21276 * 120.00226 * 4.99757 * 6 3 2 8 8 N 1.34779 * 119.99974 * 185.00332 * 6 3 2 9 9 C 1.46495 * 120.00053 * 185.21959 * 8 6 3 10 10 C 1.53001 * 109.53695 * 298.83584 * 9 8 6 11 11 O 1.42900 * 109.46852 * 305.28511 * 10 9 8 12 12 C 1.53125 * 109.50531 * 178.73635 * 9 8 6 13 13 C 1.53113 * 109.15862 * 297.71691 * 12 9 8 14 14 C 1.53041 * 109.28074 * 302.34057 * 13 12 9 15 15 N 1.46845 * 109.52159 * 59.17985 * 14 13 12 16 16 C 1.46903 * 111.00244 * 174.16247 * 15 14 13 17 17 C 1.50696 * 109.46873 * 66.04918 * 16 15 14 18 18 O 1.21290 * 120.00228 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99926 * 180.02562 * 17 16 15 20 20 C 1.37094 * 119.99878 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00381 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99860 * 179.72165 * 20 19 17 23 23 N 1.31407 * 120.00191 * 0.26935 * 22 20 19 24 24 Si 1.86799 * 120.00183 * 180.26983 * 22 20 19 25 25 H 1.48501 * 109.47214 * 89.99916 * 24 22 20 26 26 H 1.48500 * 109.47386 * 209.99723 * 24 22 20 27 27 H 1.48500 * 109.47118 * 330.00054 * 24 22 20 28 28 C 1.46847 * 111.20231 * 298.26292 * 15 14 13 29 29 H 1.08997 * 109.46832 * 60.00095 * 1 2 3 30 30 H 1.08999 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46931 * 300.00106 * 1 2 3 32 32 H 1.08996 * 109.47383 * 179.97438 * 5 3 2 33 33 H 1.08999 * 109.47059 * 300.00185 * 5 3 2 34 34 H 1.09000 * 109.47323 * 60.00076 * 5 3 2 35 35 H 0.97005 * 119.99711 * 5.21362 * 8 6 3 36 36 H 1.08997 * 109.46991 * 65.28257 * 10 9 8 37 37 H 1.09002 * 109.47065 * 185.28105 * 10 9 8 38 38 H 0.96707 * 113.99588 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.52190 * 177.80852 * 12 9 8 40 40 H 1.09000 * 109.57149 * 57.64770 * 12 9 8 41 41 H 1.09007 * 109.50224 * 182.40475 * 13 12 9 42 42 H 1.09001 * 109.54137 * 62.30203 * 13 12 9 43 43 H 1.09001 * 109.46278 * 299.16822 * 14 13 12 44 44 H 1.08995 * 109.46523 * 179.19487 * 14 13 12 45 45 H 1.09000 * 109.46657 * 306.04677 * 16 15 14 46 46 H 1.08999 * 109.47116 * 186.04942 * 16 15 14 47 47 H 0.96995 * 120.00043 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00856 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.46304 * 181.75795 * 28 15 14 50 50 H 1.09006 * 109.45984 * 301.72874 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2177 1.7714 -1.4425 6 6 3.3387 1.2638 0.7104 7 8 3.7897 0.2045 1.0914 8 7 4.0255 2.4040 0.9224 9 6 5.3668 2.3527 1.5093 10 6 5.2913 1.7292 2.9045 11 8 4.3448 2.4487 3.6972 12 6 5.9338 3.7713 1.6134 13 6 6.0622 4.3655 0.2081 14 6 6.9567 3.4614 -0.6431 15 7 6.3710 2.1166 -0.7125 16 6 7.1288 1.2591 -1.6337 17 6 8.5090 1.0208 -1.0775 18 8 8.8299 1.5168 -0.0182 19 7 9.3870 0.2573 -1.7576 20 6 10.6424 0.0400 -1.2514 21 1 10.9279 0.4810 -0.3077 22 6 11.5457 -0.7518 -1.9498 23 7 11.1985 -1.2881 -3.0981 24 14 13.2537 -1.0541 -1.2564 25 1 13.2328 -2.2673 -0.4002 26 1 14.2131 -1.2523 -2.3723 27 1 13.6730 0.1170 -0.4452 28 6 6.2815 1.5069 0.6205 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.6607 2.7673 -1.4425 33 1 2.8829 1.0774 -1.9563 34 1 1.2569 1.8015 -1.9563 35 1 3.6317 3.2584 0.6863 36 1 4.9785 0.6884 2.8208 37 1 6.2723 1.7769 3.3773 38 1 4.2452 2.1079 4.5967 39 1 6.9156 3.7373 2.0857 40 1 5.2635 4.3896 2.2105 41 1 6.5053 5.3594 0.2723 42 1 5.0754 4.4358 -0.2495 43 1 7.9477 3.4031 -0.1928 44 1 7.0386 3.8741 -1.6485 45 1 7.2077 1.7492 -2.6041 46 1 6.6139 0.3054 -1.7490 47 1 9.1305 -0.1390 -2.6049 48 1 11.8291 -1.8406 -3.5859 49 1 5.8730 0.5002 0.5327 50 1 7.2756 1.4579 1.0649 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569890032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:47 Heat of formation + Delta-G solvation = -182.792244 kcal Electronic energy + Delta-G solvation = -32730.557843 eV Core-core repulsion = 28371.098634 eV Total energy + Delta-G solvation = -4359.459209 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83525 -40.56829 -39.36989 -38.13507 -37.46669 -36.08669 -35.26203 -33.69425 -33.28051 -32.69797 -30.95763 -28.98643 -27.62994 -26.81452 -26.54882 -25.15585 -24.15377 -22.70278 -21.55353 -21.08372 -20.30643 -19.79385 -18.53731 -18.34596 -17.83469 -17.64479 -16.90071 -16.63790 -16.42118 -16.31538 -16.08160 -15.91306 -15.73792 -15.58926 -15.47659 -15.01758 -14.76618 -14.37555 -14.22086 -14.04127 -13.71250 -13.59630 -13.48400 -13.26541 -13.21297 -13.13323 -12.99751 -12.66820 -12.61198 -12.48350 -12.45875 -12.15171 -12.03040 -11.82268 -11.49403 -11.42773 -11.36501 -11.14822 -10.95288 -10.76058 -10.18927 -10.03363 -9.86721 -8.99387 -8.48494 -5.98951 1.33410 1.37663 1.50274 1.75622 1.97035 2.01871 2.26188 2.81302 3.11134 3.16705 3.23074 3.42105 3.62464 3.82632 3.88301 4.01885 4.09570 4.15270 4.25579 4.34121 4.37631 4.49220 4.50560 4.51423 4.58771 4.60245 4.61969 4.67605 4.78343 4.85177 4.88661 4.89702 4.92939 5.04153 5.08096 5.11749 5.22713 5.31720 5.36691 5.44199 5.64377 5.87426 6.02776 6.14590 6.17905 6.55153 6.76439 6.79332 7.08189 7.44078 7.51388 8.05699 8.66851 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013461 B = 0.003076 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.552963 B = 9099.778628 C = 9850.495558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.073 3.927 4 H 0.112 0.888 5 C -0.159 4.159 6 C 0.515 3.485 7 O -0.574 6.574 8 N -0.679 5.679 9 C 0.199 3.801 10 C 0.071 3.929 11 O -0.567 6.567 12 C -0.111 4.111 13 C -0.103 4.103 14 C 0.036 3.964 15 N -0.487 5.487 16 C 0.050 3.950 17 C 0.409 3.591 18 O -0.618 6.618 19 N -0.570 5.570 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.272 1.272 28 C 0.037 3.963 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.412 0.588 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.393 0.607 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.028 0.972 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.091 0.909 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.055 0.945 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.552 11.845 4.918 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.012 3.988 4 H 0.130 0.870 5 C -0.216 4.216 6 C 0.302 3.698 7 O -0.453 6.453 8 N -0.331 5.331 9 C 0.112 3.888 10 C -0.009 4.009 11 O -0.374 6.374 12 C -0.149 4.149 13 C -0.140 4.140 14 C -0.092 4.092 15 N -0.209 5.209 16 C -0.082 4.082 17 C 0.196 3.804 18 O -0.506 6.506 19 N -0.206 5.206 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.092 4.092 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.249 0.751 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.242 0.758 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.097 0.903 45 H 0.132 0.868 46 H 0.109 0.891 47 H 0.228 0.772 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.347 11.537 4.989 24.773 hybrid contribution 1.749 -0.988 0.511 2.073 sum -19.598 10.549 5.501 22.926 Atomic orbital electron populations 1.23055 0.78898 1.03907 1.01379 1.88027 1.21754 1.26813 1.95189 1.22042 0.92326 0.86616 0.97785 0.87014 1.22146 1.03621 1.02450 0.93416 1.20844 0.86865 0.83691 0.78390 1.90637 1.70593 1.31994 1.52078 1.45425 1.15838 1.08718 1.63142 1.20166 0.82379 0.96554 0.89711 1.22370 0.91967 0.95341 0.91189 1.86328 1.63014 1.59010 1.29035 1.21745 1.01191 0.93301 0.98650 1.21553 1.00834 0.98104 0.93538 1.22340 0.97172 0.88757 1.00904 1.62434 1.47675 1.02271 1.08523 1.22084 0.88424 0.99675 0.97973 1.22083 0.89054 0.82636 0.86620 1.90379 1.79969 1.55153 1.25074 1.42142 1.12247 1.44390 1.21864 1.19653 0.90157 1.30079 1.06392 0.90339 1.26060 1.03597 0.95762 0.95886 1.69673 1.38177 1.33406 1.14738 0.84943 0.76942 0.78594 0.77947 1.19869 1.19381 1.19650 1.22457 0.98905 0.97526 0.90327 0.91921 0.89044 0.92784 0.88982 0.93490 0.89586 0.75117 0.93836 0.93411 0.75831 0.92136 0.88663 0.89436 0.89378 0.95325 0.90338 0.86766 0.89117 0.77171 0.91257 0.92672 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.82 113.37 1.23 1.58 16 2 O -0.40 -10.08 9.89 -129.99 -1.29 -11.36 16 3 C 0.07 1.49 3.13 29.85 0.09 1.58 16 4 H 0.11 1.49 7.79 -2.39 -0.02 1.47 16 5 C -0.16 -2.58 9.48 71.98 0.68 -1.90 16 6 C 0.52 14.38 6.58 87.66 0.58 14.95 16 7 O -0.57 -22.00 12.82 15.97 0.20 -21.80 16 8 N -0.68 -15.60 4.39 -422.68 -1.85 -17.46 16 9 C 0.20 5.52 0.45 3.66 0.00 5.52 16 10 C 0.07 2.01 5.65 71.98 0.41 2.42 16 11 O -0.57 -12.70 13.02 -148.98 -1.94 -14.64 16 12 C -0.11 -2.58 4.70 30.67 0.14 -2.44 16 13 C -0.10 -2.14 5.91 30.65 0.18 -1.96 16 14 C 0.04 1.07 5.10 86.33 0.44 1.51 16 15 N -0.49 -15.87 4.71 -900.92 -4.24 -20.12 16 16 C 0.05 1.85 5.86 85.56 0.50 2.35 16 17 C 0.41 19.54 7.20 87.66 0.63 20.17 16 18 O -0.62 -32.78 11.20 -3.06 -0.03 -32.81 16 19 N -0.57 -29.88 5.29 -306.99 -1.62 -31.50 16 20 C -0.33 -19.16 9.68 84.04 0.81 -18.34 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.62 13.05 21.66 0.28 -50.34 16 24 Si 0.99 43.67 29.55 68.60 2.03 45.70 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 28 C 0.04 1.35 3.51 86.33 0.30 1.65 16 29 H 0.06 0.66 7.87 -2.39 -0.02 0.64 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 0.64 8.08 -2.39 -0.02 0.63 16 32 H 0.09 1.13 8.11 -2.39 -0.02 1.11 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.09 1.01 7.87 -2.39 -0.02 0.99 16 35 H 0.41 6.66 7.49 -92.70 -0.69 5.97 16 36 H 0.04 1.48 6.26 -2.39 -0.01 1.46 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.39 5.71 9.12 -74.05 -0.68 5.03 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 1.82 7.91 -2.39 -0.02 1.80 16 41 H 0.09 1.52 8.14 -2.38 -0.02 1.51 16 42 H 0.09 1.43 7.08 -2.39 -0.02 1.41 16 43 H 0.03 1.10 6.00 -2.39 -0.01 1.08 16 44 H 0.08 2.11 8.06 -2.39 -0.02 2.09 16 45 H 0.11 3.60 8.06 -2.39 -0.02 3.58 16 46 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 47 H 0.39 19.96 7.90 -92.71 -0.73 19.22 16 48 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 49 H 0.05 2.34 6.24 -2.39 -0.01 2.32 16 50 H 0.05 2.40 5.36 -2.38 -0.01 2.38 16 Total: -1.00 -77.59 392.30 -3.11 -80.70 By element: Atomic # 1 Polarization: 47.89 SS G_CDS: -1.11 Total: 46.78 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: 6.47 Total: 26.85 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -7.44 Total: -119.41 kcal Atomic # 8 Polarization: -77.56 SS G_CDS: -3.05 Total: -80.62 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -77.59 -3.11 -80.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569890032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.092 kcal (2) G-P(sol) polarization free energy of solvation -77.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds