Wall clock time and date at job start Wed Apr 1 2020 02:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 114.00037 * 2 1 4 4 H 1.09000 * 109.46878 * 329.99926 * 3 2 1 5 5 C 1.52999 * 109.47062 * 90.00353 * 3 2 1 6 6 C 1.50701 * 109.46906 * 210.00069 * 3 2 1 7 7 O 1.21288 * 119.99863 * 355.00032 * 6 3 2 8 8 N 1.34772 * 119.99947 * 174.99770 * 6 3 2 9 9 C 1.46502 * 119.99927 * 184.94694 * 8 6 3 10 10 C 1.53000 * 109.53479 * 57.58341 * 9 8 6 11 11 O 1.42903 * 109.47140 * 57.52364 * 10 9 8 12 12 C 1.53121 * 109.50462 * 177.68291 * 9 8 6 13 13 C 1.53119 * 109.15923 * 62.28714 * 12 9 8 14 14 C 1.53034 * 109.27974 * 57.65798 * 13 12 9 15 15 N 1.46849 * 109.52003 * 300.82136 * 14 13 12 16 16 C 1.46908 * 110.99667 * 185.84232 * 15 14 13 17 17 C 1.50693 * 109.47312 * 65.78731 * 16 15 14 18 18 O 1.21296 * 120.00294 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99823 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99912 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00029 * 0.02562 * 20 19 17 22 22 C 1.38952 * 119.99903 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99870 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00029 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47053 * 60.00177 * 24 22 20 26 26 H 1.48499 * 109.47200 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47207 * 300.00433 * 24 22 20 28 28 C 1.46846 * 111.20115 * 61.74190 * 15 14 13 29 29 H 1.09007 * 109.46668 * 300.00390 * 1 2 3 30 30 H 1.08995 * 109.46819 * 60.00087 * 1 2 3 31 31 H 1.08993 * 109.47226 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47606 * 59.99940 * 5 3 2 33 33 H 1.09004 * 109.46868 * 180.02562 * 5 3 2 34 34 H 1.09003 * 109.47137 * 299.99131 * 5 3 2 35 35 H 0.96996 * 120.00206 * 4.95042 * 8 6 3 36 36 H 1.09007 * 109.47078 * 177.52003 * 10 9 8 37 37 H 1.09003 * 109.47209 * 297.52299 * 10 9 8 38 38 H 0.96693 * 114.00320 * 179.97438 * 11 10 9 39 39 H 1.08994 * 109.52393 * 182.19467 * 12 9 8 40 40 H 1.09005 * 109.51979 * 302.38331 * 12 9 8 41 41 H 1.08996 * 109.50296 * 297.71449 * 13 12 9 42 42 H 1.09000 * 109.50225 * 177.59527 * 13 12 9 43 43 H 1.08997 * 109.46532 * 180.80627 * 14 13 12 44 44 H 1.08998 * 109.46617 * 60.83143 * 14 13 12 45 45 H 1.09005 * 109.46692 * 185.79139 * 16 15 14 46 46 H 1.08999 * 109.46608 * 305.78166 * 16 15 14 47 47 H 0.96997 * 119.99998 * 0.02562 * 19 17 16 48 48 H 0.97007 * 119.99967 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.45927 * 178.24340 * 28 15 14 50 50 H 1.08995 * 109.45152 * 58.27193 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2178 1.7713 1.4425 6 6 3.3387 1.2638 -0.7104 7 8 3.7897 0.2043 -1.0914 8 7 4.0255 2.4039 -0.9225 9 6 5.2625 2.3787 -1.7069 10 6 4.9760 1.8040 -3.0957 11 8 3.9669 2.5871 -3.7363 12 6 5.8091 3.8023 -1.8456 13 6 6.1493 4.3475 -0.4558 14 6 7.1612 3.4178 0.2179 15 7 6.5910 2.0690 0.3276 16 6 7.4785 1.1830 1.0929 17 6 7.5578 1.6619 2.5196 18 8 6.9359 2.6443 2.8651 19 7 8.3190 0.9979 3.4118 20 6 8.3916 1.4338 4.7097 21 1 7.8385 2.3090 5.0171 22 6 9.1760 0.7490 5.6297 23 7 9.8485 -0.3162 5.2557 24 14 9.2743 1.3425 7.3982 25 1 7.9176 1.3271 8.0017 26 1 10.1709 0.4465 8.1719 27 1 9.8131 2.7260 7.4268 28 6 6.3001 1.5060 -0.9971 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 2.8830 1.0775 1.9563 33 1 2.6608 2.7673 1.4425 34 1 1.2570 1.8015 1.9564 35 1 3.7008 3.2410 -0.5557 36 1 5.8874 1.8265 -3.6933 37 1 4.6304 0.7748 -2.9988 38 1 3.7345 2.2798 -4.6232 39 1 6.7080 3.7890 -2.4618 40 1 5.0560 4.4377 -2.3118 41 1 5.2430 4.3972 0.1475 42 1 6.5788 5.3447 -0.5512 43 1 7.3948 3.7955 1.2133 44 1 8.0725 3.3793 -0.3789 45 1 7.0837 0.1672 1.0719 46 1 8.4742 1.1951 0.6496 47 1 8.8160 0.2121 3.1356 48 1 10.3964 -0.7941 5.8980 49 1 5.9083 0.4952 -0.8840 50 1 7.2155 1.4767 -1.5880 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569890033.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:51 Heat of formation + Delta-G solvation = -153.348793 kcal Electronic energy + Delta-G solvation = -32502.130696 eV Core-core repulsion = 28143.948251 eV Total energy + Delta-G solvation = -4358.182445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.68404 -38.96699 -38.09099 -37.07730 -36.52604 -34.45094 -33.72869 -32.58371 -31.78661 -31.14892 -29.98946 -27.50165 -26.89995 -25.81706 -24.63475 -24.23625 -22.86204 -21.65399 -20.56193 -19.10864 -19.09624 -17.82484 -17.59838 -17.43052 -16.83675 -16.03993 -15.64409 -15.43314 -15.25671 -15.00117 -14.88265 -14.66955 -14.42220 -14.08930 -13.92957 -13.77195 -13.37647 -13.29623 -13.08891 -12.95795 -12.75559 -12.51052 -12.37554 -12.21683 -11.98205 -11.82080 -11.72574 -11.47106 -11.35213 -11.20028 -10.99114 -10.79707 -10.44626 -10.42122 -10.33146 -10.24749 -10.17908 -9.91266 -9.41878 -9.18365 -8.87088 -8.34671 -7.92967 -7.76281 -6.37764 -3.78485 2.78733 2.91484 3.22012 3.27567 3.31615 3.76332 3.94107 3.95953 4.20155 4.39552 4.55032 4.74391 4.76945 4.90337 4.97677 5.00549 5.09178 5.16512 5.22532 5.24599 5.29077 5.36039 5.48242 5.49501 5.54403 5.57677 5.63063 5.70568 5.72267 5.77027 5.81250 5.92153 5.97080 6.04291 6.18401 6.23102 6.33188 6.39201 6.54914 6.61550 6.95383 7.35593 7.42400 7.52507 7.58329 7.67638 8.10214 8.40606 8.66228 9.21826 9.59208 10.11053 10.80019 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011792 B = 0.003222 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.849087 B = 8688.965611 C =10087.042418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.072 3.928 4 H 0.081 0.919 5 C -0.169 4.169 6 C 0.528 3.472 7 O -0.528 6.528 8 N -0.692 5.692 9 C 0.195 3.805 10 C 0.063 3.937 11 O -0.567 6.567 12 C -0.120 4.120 13 C -0.113 4.113 14 C 0.048 3.952 15 N -0.504 5.504 16 C 0.048 3.952 17 C 0.447 3.553 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.042 3.958 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.400 0.600 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.376 0.624 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.020 0.980 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.098 0.902 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.082 5.342 -17.449 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.010 3.990 4 H 0.098 0.902 5 C -0.226 4.226 6 C 0.314 3.686 7 O -0.404 6.404 8 N -0.344 5.344 9 C 0.108 3.892 10 C -0.016 4.016 11 O -0.371 6.371 12 C -0.158 4.158 13 C -0.151 4.151 14 C -0.079 4.079 15 N -0.228 5.228 16 C -0.084 4.084 17 C 0.232 3.768 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 C -0.087 4.087 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.235 0.765 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.222 0.778 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.123 0.877 44 H 0.038 0.962 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.116 0.884 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -13.341 5.302 -16.555 21.912 hybrid contribution 0.868 -0.114 -0.032 0.876 sum -12.473 5.187 -16.587 21.392 Atomic orbital electron populations 1.22846 0.81037 1.03003 0.99818 1.88061 1.19271 1.25420 1.94942 1.21938 0.93528 0.86426 0.97067 0.90154 1.22202 1.03076 1.02722 0.94634 1.20118 0.85756 0.83960 0.78813 1.90611 1.69138 1.29819 1.50814 1.45510 1.24390 1.10041 1.54467 1.20259 0.84422 0.96178 0.88341 1.22590 0.90821 0.95781 0.92447 1.86425 1.59376 1.57292 1.34051 1.21842 1.01223 0.94450 0.98284 1.21572 1.00433 0.98273 0.94860 1.22313 0.94150 0.88928 1.02524 1.61358 1.45729 1.01861 1.13853 1.21824 0.95101 0.97287 0.94154 1.19708 0.84057 0.86524 0.86494 1.90462 1.47847 1.28184 1.79700 1.41860 1.41717 1.27344 1.09196 1.19630 1.26628 1.11972 0.84545 0.88016 1.25251 0.96454 0.95874 1.00368 1.69609 1.30184 1.18380 1.36177 0.85933 0.78240 0.78397 0.81720 1.19919 1.21018 1.19978 1.22472 0.96311 0.99994 0.89904 0.93894 0.94127 0.89346 0.90480 0.90716 0.91722 0.76547 0.93199 0.91127 0.77792 0.90950 0.90551 0.91065 0.91421 0.87719 0.96158 0.89403 0.93656 0.77519 0.91862 0.88382 0.94713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.37 16 2 O -0.36 -4.99 9.89 -55.09 -0.54 -5.53 16 3 C 0.07 0.88 3.13 -27.88 -0.09 0.80 16 4 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 5 C -0.17 -2.03 9.47 37.16 0.35 -1.68 16 6 C 0.53 7.68 6.59 -10.99 -0.07 7.61 16 7 O -0.53 -9.38 12.77 -14.31 -0.18 -9.56 16 8 N -0.69 -8.66 4.49 -47.53 -0.21 -8.88 16 9 C 0.19 2.39 0.45 -131.74 -0.06 2.33 16 10 C 0.06 0.69 5.65 37.16 0.21 0.90 16 11 O -0.57 -5.57 12.96 -35.23 -0.46 -6.03 16 12 C -0.12 -1.30 4.69 -26.61 -0.12 -1.42 16 13 C -0.11 -1.40 5.91 -26.65 -0.16 -1.56 16 14 C 0.05 0.77 5.11 -3.83 -0.02 0.75 16 15 N -0.50 -8.51 4.25 -236.12 -1.00 -9.51 16 16 C 0.05 0.89 5.45 -4.97 -0.03 0.87 16 17 C 0.45 10.62 7.46 -10.99 -0.08 10.53 16 18 O -0.58 -15.22 13.90 5.54 0.08 -15.14 16 19 N -0.56 -14.50 5.29 -10.96 -0.06 -14.56 16 20 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.90 13.05 55.50 0.72 -24.17 16 24 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 C 0.04 0.62 4.05 -3.84 -0.02 0.60 16 29 H 0.04 0.34 7.87 -51.93 -0.41 -0.07 16 30 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.07 0.83 7.77 -51.93 -0.40 0.43 16 34 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 35 H 0.40 4.39 7.02 -40.82 -0.29 4.10 16 36 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 37 H 0.07 0.92 6.25 -51.93 -0.32 0.59 16 38 H 0.38 2.16 9.12 45.56 0.42 2.58 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.77 7.83 -51.93 -0.41 0.37 16 41 H 0.07 0.92 7.00 -51.93 -0.36 0.55 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.10 2.03 5.78 -51.93 -0.30 1.73 16 44 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 1.61 7.99 -51.93 -0.41 1.20 16 46 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 47 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 48 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.10 1.63 6.05 -51.93 -0.31 1.31 16 50 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 396.32 15.07 5.97 5.97 Total: -1.00 -34.42 396.32 -7.19 -41.62 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -7.25 Total: 16.49 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 0.77 Total: 13.09 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.55 Total: -57.12 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.11 Total: -36.26 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.42 -7.19 -41.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569890033.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.733 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds