Wall clock time and date at job start Wed Apr 1 2020 02:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00141 * 2 1 4 4 H 1.09007 * 109.46481 * 30.00524 * 3 2 1 5 5 C 1.52994 * 109.47334 * 270.00576 * 3 2 1 6 6 C 1.50695 * 109.47242 * 149.99980 * 3 2 1 7 7 O 1.21285 * 119.99864 * 5.00773 * 6 3 2 8 8 N 1.34775 * 120.00423 * 185.00197 * 6 3 2 9 9 C 1.46497 * 120.00335 * 185.24602 * 8 6 3 10 10 C 1.53000 * 109.50131 * 56.07582 * 9 8 6 11 11 O 1.42894 * 109.47422 * 57.87067 * 10 9 8 12 12 C 1.53127 * 109.53425 * 176.16864 * 9 8 6 13 13 C 1.53115 * 109.16294 * 62.30869 * 12 9 8 14 14 C 1.53043 * 109.27841 * 57.65011 * 13 12 9 15 15 N 1.46850 * 109.52294 * 300.82683 * 14 13 12 16 16 C 1.46906 * 110.99658 * 185.83630 * 15 14 13 17 17 C 1.50699 * 109.46844 * 168.79905 * 16 15 14 18 18 O 1.21293 * 120.00169 * 353.54933 * 17 16 15 19 19 N 1.34779 * 119.99452 * 173.55296 * 17 16 15 20 20 C 1.37095 * 119.99544 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00016 * 0.27122 * 20 19 17 22 22 C 1.38958 * 119.99918 * 179.97438 * 20 19 17 23 23 N 1.31401 * 119.99987 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00008 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46938 * 59.99861 * 24 22 20 26 26 H 1.48503 * 109.47052 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47201 * 300.00126 * 24 22 20 28 28 C 1.46842 * 111.20105 * 61.73871 * 15 14 13 29 29 H 1.08999 * 109.46854 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46671 * 299.99656 * 1 2 3 31 31 H 1.08993 * 109.47066 * 59.99507 * 1 2 3 32 32 H 1.09002 * 109.47290 * 179.97438 * 5 3 2 33 33 H 1.08999 * 109.47524 * 299.99315 * 5 3 2 34 34 H 1.08998 * 109.47493 * 59.99813 * 5 3 2 35 35 H 0.97007 * 119.99438 * 5.25341 * 8 6 3 36 36 H 1.09000 * 109.47160 * 177.87416 * 10 9 8 37 37 H 1.09007 * 109.47037 * 297.87121 * 10 9 8 38 38 H 0.96708 * 113.99811 * 180.02562 * 11 10 9 39 39 H 1.08999 * 109.51982 * 182.21646 * 12 9 8 40 40 H 1.08998 * 109.52314 * 302.33639 * 12 9 8 41 41 H 1.08992 * 109.50709 * 177.59534 * 13 12 9 42 42 H 1.09002 * 109.50153 * 297.68007 * 13 12 9 43 43 H 1.08997 * 109.46086 * 180.80541 * 14 13 12 44 44 H 1.09006 * 109.45610 * 60.83741 * 14 13 12 45 45 H 1.09007 * 109.46947 * 48.79757 * 16 15 14 46 46 H 1.08993 * 109.46848 * 288.80108 * 16 15 14 47 47 H 0.96999 * 120.00379 * 359.97438 * 19 17 16 48 48 H 0.97002 * 120.00049 * 180.02562 * 23 22 20 49 49 H 1.09006 * 109.46240 * 58.27294 * 28 15 14 50 50 H 1.09002 * 109.46312 * 178.24643 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5140 5 6 2.2176 1.7715 -1.4424 6 6 3.3386 1.2639 0.7104 7 8 3.7897 0.2044 1.0912 8 7 4.0255 2.4040 0.9224 9 6 5.3670 2.3527 1.5088 10 6 6.2621 1.4495 0.6581 11 8 6.3028 1.9449 -0.6817 12 6 5.9602 3.7637 1.5543 13 6 5.0915 4.6452 2.4559 14 6 5.0144 4.0203 3.8508 15 7 4.4399 2.6723 3.7535 16 6 4.2224 2.0953 5.0869 17 6 3.3893 0.8457 4.9636 18 8 2.9156 0.5359 3.8908 19 7 3.1704 0.0723 6.0456 20 6 2.4129 -1.0648 5.9333 21 1 1.9952 -1.3432 4.9770 22 6 2.1877 -1.8625 7.0486 23 7 2.7012 -1.5271 8.2108 24 14 1.1549 -3.4115 6.8959 25 1 1.7864 -4.3330 5.9174 26 1 1.0667 -4.0800 8.2190 27 1 -0.2087 -3.0533 6.4297 28 6 5.2819 1.7943 2.9311 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.6606 2.7674 -1.4424 33 1 2.8829 1.0777 -1.9564 34 1 1.2568 1.8016 -1.9562 35 1 3.6314 3.2585 0.6868 36 1 7.2699 1.4416 1.0733 37 1 5.8610 0.4359 0.6586 38 1 6.8531 1.4195 -1.2787 39 1 6.9732 3.7201 1.9542 40 1 5.9835 4.1816 0.5479 41 1 5.5324 5.6395 2.5265 42 1 4.0891 4.7206 2.0344 43 1 4.3849 4.6381 4.4912 44 1 6.0158 3.9584 4.2768 45 1 3.7023 2.8184 5.7152 46 1 5.1838 1.8482 5.5370 47 1 3.5495 0.3199 6.9034 48 1 2.5443 -2.0842 8.9892 49 1 6.2821 1.7428 3.3615 50 1 4.8467 0.7953 2.9035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569890034.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:53 Heat of formation + Delta-G solvation = -180.786771 kcal Electronic energy + Delta-G solvation = -33231.444435 eV Core-core repulsion = 28872.072190 eV Total energy + Delta-G solvation = -4359.372245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.65978 -40.22356 -39.42022 -38.16237 -37.45422 -35.93514 -35.31720 -33.60552 -33.15395 -32.69239 -30.94542 -28.99265 -27.68750 -26.80665 -26.49558 -25.13049 -24.19107 -22.57723 -21.49634 -20.90548 -20.10119 -19.82011 -18.47269 -18.27674 -17.73161 -17.63415 -16.83700 -16.58841 -16.48929 -16.44941 -15.95279 -15.80457 -15.67555 -15.45553 -15.29219 -14.77795 -14.73885 -14.31653 -14.13752 -14.09711 -13.71123 -13.59941 -13.51152 -13.40621 -13.21562 -13.15578 -13.00040 -12.76933 -12.68311 -12.49728 -12.40954 -12.13579 -12.06996 -11.78220 -11.52708 -11.46564 -11.32442 -11.04394 -10.80258 -10.17214 -10.04979 -9.91971 -9.74743 -9.12830 -8.43335 -5.89837 1.36936 1.38061 1.48984 1.96251 2.08213 2.15412 2.29292 2.71813 3.10767 3.21403 3.25616 3.58219 3.70522 3.80715 3.91236 4.01024 4.07229 4.16931 4.25985 4.31769 4.36179 4.40980 4.46934 4.50745 4.52615 4.54715 4.58665 4.62875 4.71581 4.78576 4.80463 4.84644 4.84796 4.94335 5.10858 5.13182 5.20274 5.32562 5.41789 5.43553 5.76842 5.92619 6.11315 6.16133 6.33258 6.67276 6.83201 6.84848 7.19737 7.61556 7.64162 8.23467 8.74499 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010071 B = 0.004264 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.659679 B = 6565.248188 C = 8361.576953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.398 6.398 3 C 0.067 3.933 4 H 0.089 0.911 5 C -0.151 4.151 6 C 0.519 3.481 7 O -0.555 6.555 8 N -0.684 5.684 9 C 0.196 3.804 10 C 0.069 3.931 11 O -0.566 6.566 12 C -0.110 4.110 13 C -0.109 4.109 14 C 0.047 3.953 15 N -0.518 5.518 16 C 0.059 3.941 17 C 0.435 3.565 18 O -0.584 6.584 19 N -0.583 5.583 20 C -0.322 4.322 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.924 5.924 24 Si 0.987 3.013 25 H -0.279 1.279 26 H -0.267 1.267 27 H -0.272 1.272 28 C 0.044 3.956 29 H 0.089 0.911 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.406 0.594 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.392 0.608 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.040 0.960 45 H 0.111 0.889 46 H 0.056 0.944 47 H 0.393 0.607 48 H 0.276 0.724 49 H 0.031 0.969 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.559 16.414 -15.906 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C 0.006 3.994 4 H 0.107 0.893 5 C -0.208 4.208 6 C 0.304 3.696 7 O -0.432 6.432 8 N -0.337 5.337 9 C 0.109 3.891 10 C -0.011 4.011 11 O -0.373 6.373 12 C -0.147 4.147 13 C -0.147 4.147 14 C -0.080 4.080 15 N -0.243 5.243 16 C -0.073 4.073 17 C 0.222 3.778 18 O -0.467 6.467 19 N -0.222 5.222 20 C -0.451 4.451 21 H 0.088 0.912 22 C -0.213 4.213 23 N -0.566 5.566 24 Si 0.811 3.189 25 H -0.204 1.204 26 H -0.191 1.191 27 H -0.197 1.197 28 C -0.085 4.085 29 H 0.107 0.893 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.242 0.758 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.241 0.759 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.059 0.941 45 H 0.129 0.871 46 H 0.074 0.926 47 H 0.226 0.774 48 H 0.085 0.915 49 H 0.049 0.951 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.815 15.685 -16.172 23.038 hybrid contribution 0.372 -1.281 1.073 1.712 sum 5.187 14.404 -15.099 21.503 Atomic orbital electron populations 1.22971 0.79382 1.03640 1.00811 1.87998 1.21401 1.27132 1.95153 1.22076 0.93014 0.86147 0.98137 0.89292 1.22110 1.03733 1.02329 0.92654 1.20528 0.86451 0.84131 0.78444 1.90654 1.69928 1.32222 1.50392 1.45286 1.16650 1.08055 1.63752 1.20242 0.82178 0.97011 0.89670 1.22369 0.98334 0.96765 0.83583 1.86346 1.74336 1.56742 1.19903 1.21789 0.99507 0.91444 1.01998 1.21604 1.00687 0.99089 0.93286 1.22345 0.98157 0.88382 0.99101 1.61338 1.48797 1.02752 1.11368 1.21718 0.98602 0.94948 0.91989 1.20903 0.85592 0.86879 0.84438 1.90611 1.54195 1.73973 1.27929 1.41909 1.47582 1.22417 1.10340 1.19489 1.28310 1.01182 0.96153 0.91193 1.25916 0.99138 1.02014 0.94235 1.69661 1.46055 1.40669 1.00216 0.85091 0.78493 0.77721 0.77613 1.20426 1.19113 1.19722 1.22407 0.94267 0.98562 0.93251 0.89256 0.94612 0.90951 0.88846 0.92793 0.89706 0.75770 0.91794 0.94923 0.75906 0.89843 0.89003 0.87988 0.91269 0.89589 0.94144 0.87129 0.92574 0.77419 0.91513 0.95058 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.82 113.37 1.23 2.00 16 2 O -0.40 -14.81 9.89 -129.99 -1.29 -16.09 16 3 C 0.07 2.06 3.13 29.84 0.09 2.16 16 4 H 0.09 2.46 7.79 -2.38 -0.02 2.44 16 5 C -0.15 -3.14 9.48 71.98 0.68 -2.46 16 6 C 0.52 19.05 6.59 87.66 0.58 19.63 16 7 O -0.56 -26.78 12.35 17.27 0.21 -26.57 16 8 N -0.68 -19.23 4.51 -422.69 -1.91 -21.13 16 9 C 0.20 5.28 0.45 3.66 0.00 5.28 16 10 C 0.07 1.84 5.63 71.98 0.41 2.25 16 11 O -0.57 -12.15 12.95 -148.98 -1.93 -14.08 16 12 C -0.11 -1.97 4.69 30.67 0.14 -1.82 16 13 C -0.11 -1.75 5.91 30.65 0.18 -1.57 16 14 C 0.05 1.02 5.46 86.33 0.47 1.49 16 15 N -0.52 -16.69 4.19 -900.90 -3.77 -20.46 16 16 C 0.06 2.14 5.45 85.56 0.47 2.61 16 17 C 0.44 21.99 7.31 87.66 0.64 22.63 16 18 O -0.58 -33.92 13.92 -3.06 -0.04 -33.96 16 19 N -0.58 -31.85 5.29 -306.97 -1.62 -33.48 16 20 C -0.32 -19.49 9.68 84.04 0.81 -18.67 16 21 H 0.07 4.61 7.16 -2.91 -0.02 4.59 16 22 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 23 N -0.92 -52.41 13.05 21.66 0.28 -52.13 16 24 Si 0.99 46.06 29.55 68.60 2.03 48.09 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 27 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 28 C 0.04 1.53 3.73 86.32 0.32 1.86 16 29 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.04 1.02 8.08 -2.39 -0.02 1.00 16 31 H 0.07 1.42 7.87 -2.39 -0.02 1.40 16 32 H 0.09 1.47 8.11 -2.39 -0.02 1.45 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.38 7.87 -2.39 -0.02 1.37 16 35 H 0.41 8.85 7.33 -92.70 -0.68 8.17 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.03 1.16 6.14 -2.38 -0.01 1.14 16 38 H 0.39 5.38 9.12 -74.05 -0.68 4.70 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.09 1.45 7.82 -2.39 -0.02 1.43 16 41 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.07 1.16 6.98 -2.39 -0.02 1.14 16 43 H 0.09 1.67 8.00 -2.39 -0.02 1.65 16 44 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.11 3.51 7.96 -2.38 -0.02 3.49 16 46 H 0.06 1.91 8.11 -2.39 -0.02 1.89 16 47 H 0.39 20.41 7.90 -92.71 -0.73 19.68 16 48 H 0.28 14.66 8.31 -92.71 -0.77 13.89 16 49 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 50 H 0.07 3.22 4.25 -2.39 -0.01 3.21 16 Total: -1.00 -85.40 396.65 -2.65 -88.05 By element: Atomic # 1 Polarization: 47.83 SS G_CDS: -1.11 Total: 46.72 kcal Atomic # 6 Polarization: 28.55 SS G_CDS: 6.49 Total: 35.04 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -7.02 Total: -127.20 kcal Atomic # 8 Polarization: -87.66 SS G_CDS: -3.04 Total: -90.70 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -85.40 -2.65 -88.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569890034.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.736 kcal (2) G-P(sol) polarization free energy of solvation -85.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds