Wall clock time and date at job start Wed Apr 1 2020 02:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00365 * 2 1 4 4 H 1.09005 * 109.46700 * 329.99933 * 3 2 1 5 5 C 1.52996 * 109.47424 * 89.99605 * 3 2 1 6 6 C 1.50702 * 109.47305 * 210.00220 * 3 2 1 7 7 O 1.21280 * 119.99855 * 354.99118 * 6 3 2 8 8 N 1.34774 * 120.00164 * 174.99973 * 6 3 2 9 9 C 1.46492 * 120.00013 * 175.24931 * 8 6 3 10 10 C 1.53004 * 109.50363 * 301.62194 * 9 8 6 11 11 O 1.42899 * 109.47234 * 305.64068 * 10 9 8 12 12 C 1.53126 * 109.50306 * 181.54239 * 9 8 6 13 13 C 1.53117 * 109.16012 * 297.63444 * 12 9 8 14 14 C 1.53042 * 109.31180 * 302.40627 * 13 12 9 15 15 N 1.46846 * 109.52303 * 59.15355 * 14 13 12 16 16 C 1.46895 * 110.99857 * 174.15958 * 15 14 13 17 17 C 1.50695 * 109.47511 * 294.21480 * 16 15 14 18 18 O 1.21292 * 120.00177 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00158 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99932 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99967 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99955 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99869 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00111 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47359 * 89.99534 * 24 22 20 26 26 H 1.48500 * 109.47014 * 209.99847 * 24 22 20 27 27 H 1.48505 * 109.47146 * 329.99652 * 24 22 20 28 28 C 1.46847 * 111.20257 * 298.26276 * 15 14 13 29 29 H 1.09005 * 109.46645 * 60.00114 * 1 2 3 30 30 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46794 * 300.00548 * 1 2 3 32 32 H 1.08997 * 109.47464 * 300.00523 * 5 3 2 33 33 H 1.09005 * 109.46914 * 60.00459 * 5 3 2 34 34 H 1.09000 * 109.47282 * 180.02562 * 5 3 2 35 35 H 0.97003 * 119.99978 * 355.24658 * 8 6 3 36 36 H 1.08998 * 109.46716 * 65.64737 * 10 9 8 37 37 H 1.09002 * 109.46975 * 185.64671 * 10 9 8 38 38 H 0.96700 * 114.00420 * 303.54358 * 11 10 9 39 39 H 1.08998 * 109.51776 * 57.58247 * 12 9 8 40 40 H 1.09003 * 109.52213 * 177.76633 * 12 9 8 41 41 H 1.09002 * 109.50575 * 182.44101 * 13 12 9 42 42 H 1.09001 * 109.50092 * 62.36438 * 13 12 9 43 43 H 1.09000 * 109.45841 * 299.14186 * 14 13 12 44 44 H 1.08993 * 109.46190 * 179.17394 * 14 13 12 45 45 H 1.08998 * 109.47325 * 54.21532 * 16 15 14 46 46 H 1.08997 * 109.47169 * 174.21262 * 16 15 14 47 47 H 0.96993 * 120.00103 * 359.97438 * 19 17 16 48 48 H 0.97001 * 119.99863 * 179.97438 * 23 22 20 49 49 H 1.09005 * 109.45469 * 301.72598 * 28 15 14 50 50 H 1.08992 * 109.45745 * 181.75498 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3387 1.2638 -0.7105 7 8 3.7898 0.2044 -1.0913 8 7 4.0256 2.4039 -0.9224 9 6 5.3626 2.3533 -1.5189 10 6 6.2784 1.4914 -0.6475 11 8 6.2591 1.9819 0.6945 12 6 5.9336 3.7709 -1.6145 13 6 5.0448 4.6096 -2.5370 14 6 4.9651 3.9387 -3.9102 15 7 4.4118 2.5864 -3.7644 16 6 4.1915 1.9634 -5.0763 17 6 3.1178 2.7181 -5.8170 18 8 2.5878 3.6800 -5.3024 19 7 2.7465 2.3241 -7.0512 20 6 1.7701 3.0110 -7.7252 21 1 1.2981 3.8676 -7.2669 22 6 1.3869 2.6046 -8.9975 23 7 1.9608 1.5621 -9.5549 24 14 0.0569 3.5410 -9.9162 25 1 0.6790 4.6237 -10.7197 26 1 -0.6704 2.6113 -10.8172 27 1 -0.8952 4.1322 -8.9418 28 6 5.2738 1.7479 -2.9216 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.2569 1.8015 1.9563 33 1 2.8830 1.0775 1.9563 34 1 2.6607 2.7673 1.4424 35 1 3.6345 3.2579 -0.6801 36 1 5.9280 0.4593 -0.6623 37 1 7.2960 1.5352 -1.0357 38 1 6.5074 2.9129 0.7766 39 1 5.9577 4.2215 -0.6223 40 1 6.9440 3.7299 -2.0215 41 1 5.4701 5.6076 -2.6436 42 1 4.0448 4.6840 -2.1098 43 1 5.9636 3.8778 -4.3431 44 1 4.3210 4.5261 -4.5645 45 1 5.1171 1.9904 -5.6514 46 1 3.8792 0.9282 -4.9391 47 1 3.1706 1.5551 -7.4630 48 1 1.6930 1.2781 -10.4429 49 1 6.2709 1.6973 -3.3592 50 1 4.8538 0.7441 -2.8580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569890035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:58 Heat of formation + Delta-G solvation = -154.980394 kcal Electronic energy + Delta-G solvation = -32467.990107 eV Core-core repulsion = 28109.736910 eV Total energy + Delta-G solvation = -4358.253197 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.79613 -39.00643 -38.16080 -37.10164 -36.54985 -34.38959 -33.75670 -32.64269 -31.84385 -31.18469 -30.04231 -27.54094 -26.87094 -25.96265 -24.66143 -24.30465 -22.93962 -21.80118 -20.66259 -19.19046 -19.15339 -17.86045 -17.60152 -17.35373 -16.74584 -16.07676 -15.81569 -15.60601 -15.05433 -14.95820 -14.73659 -14.70345 -14.35867 -14.32933 -14.13794 -13.80751 -13.57612 -13.36033 -13.22306 -12.98608 -12.78175 -12.64925 -12.48718 -12.29172 -12.02713 -11.81162 -11.57382 -11.42267 -11.40296 -11.23787 -11.05068 -10.93717 -10.66418 -10.52003 -10.39503 -10.23128 -10.21268 -9.94958 -9.46087 -9.23990 -8.87470 -8.38084 -7.96225 -7.80158 -6.40727 -3.81589 2.79818 2.86896 3.17364 3.26003 3.31543 3.86388 3.92089 3.96627 4.22476 4.31494 4.37794 4.63048 4.72033 4.77615 4.83572 4.95981 5.04937 5.12732 5.18448 5.26143 5.27186 5.32761 5.37614 5.44046 5.45885 5.53096 5.56931 5.61355 5.61785 5.65921 5.79120 5.87260 5.90167 5.93053 5.98311 6.11945 6.28573 6.31739 6.47681 6.54619 6.95999 7.31081 7.42802 7.47284 7.55571 7.62581 8.07262 8.39042 8.62954 9.18805 9.55990 10.07607 10.77072 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.003205 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.774828 B = 8735.579033 C =10158.932356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.086 0.914 5 C -0.165 4.165 6 C 0.531 3.469 7 O -0.524 6.524 8 N -0.695 5.695 9 C 0.154 3.846 10 C 0.067 3.933 11 O -0.558 6.558 12 C -0.129 4.129 13 C -0.110 4.110 14 C 0.048 3.952 15 N -0.505 5.505 16 C 0.048 3.952 17 C 0.446 3.554 18 O -0.579 6.579 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.041 3.959 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.398 0.602 36 H 0.110 0.890 37 H 0.052 0.948 38 H 0.367 0.633 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.020 0.980 44 H 0.105 0.895 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.035 0.965 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.701 2.582 19.778 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.007 3.993 4 H 0.104 0.896 5 C -0.223 4.223 6 C 0.316 3.684 7 O -0.399 6.399 8 N -0.348 5.348 9 C 0.067 3.933 10 C -0.013 4.013 11 O -0.362 6.362 12 C -0.166 4.166 13 C -0.148 4.148 14 C -0.079 4.079 15 N -0.229 5.229 16 C -0.084 4.084 17 C 0.231 3.769 18 O -0.464 6.464 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.088 4.088 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.233 0.767 36 H 0.128 0.872 37 H 0.071 0.929 38 H 0.214 0.786 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.038 0.962 44 H 0.123 0.877 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.053 0.947 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.102 1.609 20.017 20.988 hybrid contribution 0.129 1.045 -1.421 1.768 sum 6.231 2.654 18.596 19.791 Atomic orbital electron populations 1.22876 0.80725 1.03121 1.00081 1.88030 1.19570 1.25196 1.94922 1.21918 0.93941 0.86943 0.96484 0.89624 1.22175 1.02972 1.01934 0.95178 1.20076 0.85654 0.83992 0.78645 1.90611 1.69062 1.30228 1.50009 1.45479 1.17009 1.08654 1.63608 1.21034 0.83245 0.96077 0.92991 1.22766 0.97143 0.99751 0.81613 1.86594 1.92221 1.30585 1.26818 1.21932 1.00116 0.94013 1.00577 1.21520 0.99960 0.97878 0.95478 1.22298 0.97624 0.90705 0.97284 1.61377 1.46834 1.01750 1.12982 1.21819 0.97944 0.99048 0.89561 1.19721 0.86822 0.87416 0.82893 1.90458 1.58086 1.29852 1.67960 1.41871 1.35246 1.29157 1.13801 1.19677 1.13870 1.11610 0.97650 0.87974 1.25258 0.98905 0.96710 0.97073 1.69617 1.42835 1.25193 1.16621 0.85869 0.80433 0.78864 0.79176 1.20465 1.20928 1.19448 1.22501 0.95603 0.99023 0.91658 0.93522 0.89280 0.94093 0.91633 0.91088 0.91096 0.76683 0.87160 0.92943 0.78618 0.91288 0.90469 0.91358 0.90970 0.96150 0.87713 0.93647 0.89398 0.77499 0.91881 0.94737 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.39 16 2 O -0.36 -5.10 9.89 -55.09 -0.54 -5.64 16 3 C 0.07 0.83 3.13 -27.88 -0.09 0.75 16 4 H 0.09 0.95 7.79 -51.93 -0.40 0.54 16 5 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 6 C 0.53 7.58 6.59 -10.99 -0.07 7.51 16 7 O -0.52 -9.35 12.80 -14.30 -0.18 -9.53 16 8 N -0.69 -7.99 4.41 -47.53 -0.21 -8.20 16 9 C 0.15 1.70 0.45 -131.74 -0.06 1.64 16 10 C 0.07 0.72 5.69 37.16 0.21 0.93 16 11 O -0.56 -5.65 13.45 -35.23 -0.47 -6.12 16 12 C -0.13 -1.11 4.59 -26.61 -0.12 -1.23 16 13 C -0.11 -1.22 5.91 -26.65 -0.16 -1.38 16 14 C 0.05 0.74 5.11 -3.83 -0.02 0.72 16 15 N -0.51 -8.32 4.25 -236.13 -1.00 -9.32 16 16 C 0.05 0.88 5.45 -4.98 -0.03 0.86 16 17 C 0.45 10.53 7.46 -10.99 -0.08 10.45 16 18 O -0.58 -15.19 13.90 5.55 0.08 -15.11 16 19 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 20 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 24 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 C 0.04 0.58 4.04 -3.83 -0.02 0.56 16 29 H 0.05 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 32 H 0.06 0.50 7.87 -51.93 -0.41 0.09 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.40 3.81 7.38 -40.82 -0.30 3.51 16 36 H 0.11 1.51 6.39 -51.93 -0.33 1.18 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.37 2.29 7.54 45.56 0.34 2.63 16 39 H 0.07 0.42 6.94 -51.93 -0.36 0.06 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.85 7.02 -51.93 -0.36 0.48 16 43 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.10 1.99 5.78 -51.93 -0.30 1.69 16 45 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 46 H 0.09 1.60 7.99 -51.93 -0.41 1.19 16 47 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.10 1.62 5.99 -51.93 -0.31 1.31 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -34.58 395.03 -7.28 -41.87 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -7.32 Total: 15.45 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 0.77 Total: 13.08 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.55 Total: -55.99 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.12 Total: -36.40 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.58 -7.28 -41.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569890035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.114 kcal (2) G-P(sol) polarization free energy of solvation -34.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds