Wall clock time and date at job start Wed Apr 1 2020 02:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00365 * 2 1 4 4 H 1.09005 * 109.46700 * 329.99933 * 3 2 1 5 5 C 1.52996 * 109.47424 * 89.99605 * 3 2 1 6 6 C 1.50702 * 109.47305 * 210.00220 * 3 2 1 7 7 O 1.21280 * 119.99855 * 354.99118 * 6 3 2 8 8 N 1.34774 * 120.00164 * 174.99973 * 6 3 2 9 9 C 1.46492 * 120.00013 * 175.24931 * 8 6 3 10 10 C 1.53004 * 109.50363 * 301.62194 * 9 8 6 11 11 O 1.42899 * 109.47234 * 305.64068 * 10 9 8 12 12 C 1.53126 * 109.50306 * 181.54239 * 9 8 6 13 13 C 1.53117 * 109.16012 * 297.63444 * 12 9 8 14 14 C 1.53042 * 109.31180 * 302.40627 * 13 12 9 15 15 N 1.46846 * 109.52303 * 59.15355 * 14 13 12 16 16 C 1.46895 * 110.99857 * 174.15958 * 15 14 13 17 17 C 1.50695 * 109.47511 * 294.21480 * 16 15 14 18 18 O 1.21292 * 120.00177 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00158 * 179.97438 * 17 16 15 20 20 C 1.37097 * 119.99932 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99967 * 359.97438 * 20 19 17 22 22 C 1.38951 * 119.99955 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99869 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00111 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47359 * 89.99534 * 24 22 20 26 26 H 1.48500 * 109.47014 * 209.99847 * 24 22 20 27 27 H 1.48505 * 109.47146 * 329.99652 * 24 22 20 28 28 C 1.46847 * 111.20257 * 298.26276 * 15 14 13 29 29 H 1.09005 * 109.46645 * 60.00114 * 1 2 3 30 30 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46794 * 300.00548 * 1 2 3 32 32 H 1.08997 * 109.47464 * 300.00523 * 5 3 2 33 33 H 1.09005 * 109.46914 * 60.00459 * 5 3 2 34 34 H 1.09000 * 109.47282 * 180.02562 * 5 3 2 35 35 H 0.97003 * 119.99978 * 355.24658 * 8 6 3 36 36 H 1.08998 * 109.46716 * 65.64737 * 10 9 8 37 37 H 1.09002 * 109.46975 * 185.64671 * 10 9 8 38 38 H 0.96700 * 114.00420 * 303.54358 * 11 10 9 39 39 H 1.08998 * 109.51776 * 57.58247 * 12 9 8 40 40 H 1.09003 * 109.52213 * 177.76633 * 12 9 8 41 41 H 1.09002 * 109.50575 * 182.44101 * 13 12 9 42 42 H 1.09001 * 109.50092 * 62.36438 * 13 12 9 43 43 H 1.09000 * 109.45841 * 299.14186 * 14 13 12 44 44 H 1.08993 * 109.46190 * 179.17394 * 14 13 12 45 45 H 1.08998 * 109.47325 * 54.21532 * 16 15 14 46 46 H 1.08997 * 109.47169 * 174.21262 * 16 15 14 47 47 H 0.96993 * 120.00103 * 359.97438 * 19 17 16 48 48 H 0.97001 * 119.99863 * 179.97438 * 23 22 20 49 49 H 1.09005 * 109.45469 * 301.72598 * 28 15 14 50 50 H 1.08992 * 109.45745 * 181.75498 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3387 1.2638 -0.7105 7 8 3.7898 0.2044 -1.0913 8 7 4.0256 2.4039 -0.9224 9 6 5.3626 2.3533 -1.5189 10 6 6.2784 1.4914 -0.6475 11 8 6.2591 1.9819 0.6945 12 6 5.9336 3.7709 -1.6145 13 6 5.0448 4.6096 -2.5370 14 6 4.9651 3.9387 -3.9102 15 7 4.4118 2.5864 -3.7644 16 6 4.1915 1.9634 -5.0763 17 6 3.1178 2.7181 -5.8170 18 8 2.5878 3.6800 -5.3024 19 7 2.7465 2.3241 -7.0512 20 6 1.7701 3.0110 -7.7252 21 1 1.2981 3.8676 -7.2669 22 6 1.3869 2.6046 -8.9975 23 7 1.9608 1.5621 -9.5549 24 14 0.0569 3.5410 -9.9162 25 1 0.6790 4.6237 -10.7197 26 1 -0.6704 2.6113 -10.8172 27 1 -0.8952 4.1322 -8.9418 28 6 5.2738 1.7479 -2.9216 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.2569 1.8015 1.9563 33 1 2.8830 1.0775 1.9563 34 1 2.6607 2.7673 1.4424 35 1 3.6345 3.2579 -0.6801 36 1 5.9280 0.4593 -0.6623 37 1 7.2960 1.5352 -1.0357 38 1 6.5074 2.9129 0.7766 39 1 5.9577 4.2215 -0.6223 40 1 6.9440 3.7299 -2.0215 41 1 5.4701 5.6076 -2.6436 42 1 4.0448 4.6840 -2.1098 43 1 5.9636 3.8778 -4.3431 44 1 4.3210 4.5261 -4.5645 45 1 5.1171 1.9904 -5.6514 46 1 3.8792 0.9282 -4.9391 47 1 3.1706 1.5551 -7.4630 48 1 1.6930 1.2781 -10.4429 49 1 6.2709 1.6973 -3.3592 50 1 4.8538 0.7441 -2.8580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569890035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:57 Heat of formation + Delta-G solvation = -184.785849 kcal Electronic energy + Delta-G solvation = -32469.282568 eV Core-core repulsion = 28109.736910 eV Total energy + Delta-G solvation = -4359.545658 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.81719 -40.39162 -39.55963 -38.21849 -37.56612 -35.99355 -35.26527 -33.73279 -33.23064 -32.72948 -30.97461 -29.07462 -27.69926 -26.90399 -26.51169 -25.20656 -24.10261 -22.91198 -21.63274 -20.99837 -20.20519 -19.87831 -18.54827 -18.26621 -17.80659 -17.61349 -16.93260 -16.61405 -16.51888 -16.32933 -15.99969 -15.81179 -15.68205 -15.60122 -15.42668 -15.04488 -14.85122 -14.50587 -14.31641 -14.21780 -13.70214 -13.57374 -13.54505 -13.44029 -13.35463 -13.10576 -13.01858 -12.72088 -12.69586 -12.44701 -12.43031 -12.13125 -12.10934 -11.83499 -11.73602 -11.48684 -11.41249 -11.10371 -10.89137 -10.32337 -10.24679 -10.01191 -9.80529 -9.16754 -8.47196 -5.96275 1.36815 1.40199 1.53353 1.74297 1.96001 2.03200 2.26783 2.69635 3.04241 3.19165 3.37226 3.50726 3.55333 3.75652 3.84219 3.93168 3.97359 4.10470 4.18116 4.25453 4.33008 4.43374 4.43833 4.46520 4.48326 4.51101 4.52103 4.65884 4.70993 4.73082 4.77927 4.82511 4.83623 4.96571 5.03101 5.04828 5.21014 5.24128 5.39159 5.40946 5.61139 5.87704 6.08127 6.09138 6.27421 6.58865 6.68481 6.88908 7.11343 7.38434 7.54556 8.09502 8.70496 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011753 B = 0.003205 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.774828 B = 8735.579033 C =10158.932356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.395 6.395 3 C 0.064 3.936 4 H 0.093 0.907 5 C -0.154 4.154 6 C 0.519 3.481 7 O -0.568 6.568 8 N -0.684 5.684 9 C 0.155 3.845 10 C 0.077 3.923 11 O -0.568 6.568 12 C -0.117 4.117 13 C -0.104 4.104 14 C 0.047 3.953 15 N -0.518 5.518 16 C 0.058 3.942 17 C 0.446 3.554 18 O -0.607 6.607 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.923 5.923 24 Si 0.995 3.005 25 H -0.269 1.269 26 H -0.272 1.272 27 H -0.271 1.271 28 C 0.043 3.957 29 H 0.040 0.960 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.409 0.591 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.387 0.613 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.031 0.969 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.088 0.912 47 H 0.393 0.607 48 H 0.277 0.723 49 H 0.050 0.950 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.575 4.261 21.247 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.313 6.313 3 C 0.003 3.997 4 H 0.111 0.889 5 C -0.211 4.211 6 C 0.306 3.694 7 O -0.447 6.447 8 N -0.336 5.336 9 C 0.068 3.932 10 C -0.002 4.002 11 O -0.375 6.375 12 C -0.154 4.154 13 C -0.142 4.142 14 C -0.080 4.080 15 N -0.243 5.243 16 C -0.073 4.073 17 C 0.233 3.767 18 O -0.492 6.492 19 N -0.213 5.213 20 C -0.460 4.460 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.818 3.182 25 H -0.195 1.195 26 H -0.197 1.197 27 H -0.196 1.196 28 C -0.085 4.085 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.246 0.754 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.237 0.763 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.049 0.951 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.227 0.773 48 H 0.086 0.914 49 H 0.068 0.932 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.996 3.328 21.509 22.862 hybrid contribution -0.131 0.524 -1.854 1.931 sum 6.866 3.852 19.655 21.173 Atomic orbital electron populations 1.23034 0.79153 1.03999 1.00992 1.87981 1.21465 1.26689 1.95203 1.22107 0.92853 0.86478 0.98290 0.88883 1.22120 1.03787 1.02466 0.92775 1.20621 0.86451 0.83991 0.78350 1.90595 1.70284 1.31893 1.51901 1.45456 1.17145 1.08458 1.62547 1.21125 0.83250 0.97817 0.91057 1.22514 0.97881 0.97826 0.81993 1.86571 1.92395 1.32421 1.26078 1.21927 0.99941 0.91458 1.02114 1.21487 1.00489 0.98962 0.93282 1.22269 0.96813 0.89526 0.99396 1.61356 1.48474 1.02669 1.11753 1.21650 0.96748 0.98203 0.90725 1.20580 0.86944 0.86917 0.82278 1.90433 1.59207 1.31133 1.68465 1.41954 1.35423 1.29349 1.14593 1.19671 1.15450 1.12098 0.98800 0.90054 1.26078 1.00696 0.97411 0.97255 1.69690 1.43711 1.25969 1.17070 0.84906 0.77635 0.77865 0.77800 1.19473 1.19733 1.19608 1.22483 0.95446 0.97453 0.93147 0.94152 0.88579 0.91527 0.89899 0.92603 0.88844 0.75368 0.90690 0.90634 0.76317 0.87473 0.88662 0.89185 0.91811 0.95065 0.92057 0.91859 0.89378 0.77339 0.91358 0.93158 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.82 113.37 1.23 1.72 16 2 O -0.39 -11.38 9.89 -129.99 -1.29 -12.66 16 3 C 0.06 1.53 3.13 29.85 0.09 1.62 16 4 H 0.09 2.02 7.79 -2.38 -0.02 2.00 16 5 C -0.15 -2.52 9.48 71.98 0.68 -1.84 16 6 C 0.52 14.90 6.59 87.66 0.58 15.48 16 7 O -0.57 -21.11 12.80 15.96 0.20 -20.90 16 8 N -0.68 -14.81 4.41 -422.69 -1.87 -16.67 16 9 C 0.15 3.10 0.45 3.66 0.00 3.10 16 10 C 0.08 1.52 5.69 71.98 0.41 1.93 16 11 O -0.57 -9.83 13.45 -148.98 -2.00 -11.84 16 12 C -0.12 -1.53 4.59 30.68 0.14 -1.39 16 13 C -0.10 -2.03 5.91 30.65 0.18 -1.85 16 14 C 0.05 1.40 5.11 86.33 0.44 1.84 16 15 N -0.52 -17.00 4.25 -900.96 -3.83 -20.83 16 16 C 0.06 2.21 5.45 85.56 0.47 2.67 16 17 C 0.45 21.79 7.46 87.66 0.65 22.44 16 18 O -0.61 -33.00 13.90 -3.07 -0.04 -33.05 16 19 N -0.58 -30.48 5.29 -306.99 -1.62 -32.10 16 20 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 21 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 22 C -0.02 -0.81 5.50 84.93 0.47 -0.35 16 23 N -0.92 -50.99 13.05 21.66 0.28 -50.71 16 24 Si 0.99 43.29 29.55 68.60 2.03 45.31 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 28 C 0.04 1.18 4.04 86.33 0.35 1.53 16 29 H 0.04 0.85 8.09 -2.38 -0.02 0.83 16 30 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 0.99 7.87 -2.39 -0.02 0.97 16 32 H 0.08 1.07 7.87 -2.39 -0.02 1.05 16 33 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 35 H 0.41 6.92 7.38 -92.71 -0.68 6.23 16 36 H 0.07 2.07 6.39 -2.39 -0.02 2.05 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.39 3.08 7.54 -74.06 -0.56 2.52 16 39 H 0.11 0.69 6.94 -2.39 -0.02 0.67 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.36 7.02 -2.39 -0.02 1.34 16 43 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.06 2.37 5.78 -2.39 -0.01 2.36 16 45 H 0.06 2.17 8.12 -2.39 -0.02 2.15 16 46 H 0.09 3.33 7.99 -2.39 -0.02 3.31 16 47 H 0.39 20.17 7.90 -92.71 -0.73 19.43 16 48 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 49 H 0.05 1.20 8.14 -2.38 -0.02 1.19 16 50 H 0.07 2.38 5.99 -2.39 -0.01 2.37 16 Total: -1.00 -79.23 395.03 -2.62 -81.85 By element: Atomic # 1 Polarization: 43.86 SS G_CDS: -0.99 Total: 42.87 kcal Atomic # 6 Polarization: 22.22 SS G_CDS: 6.50 Total: 28.72 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -7.03 Total: -120.31 kcal Atomic # 8 Polarization: -75.32 SS G_CDS: -3.13 Total: -78.44 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -79.23 -2.62 -81.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569890035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.931 kcal (2) G-P(sol) polarization free energy of solvation -79.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds