Wall clock time and date at job start Wed Apr 1 2020 02:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99867 * 2 1 4 4 H 1.09003 * 109.47165 * 329.99769 * 3 2 1 5 5 C 1.53003 * 109.47596 * 89.99704 * 3 2 1 6 6 C 1.50698 * 109.47014 * 209.99688 * 3 2 1 7 7 O 1.21281 * 119.99885 * 354.58621 * 6 3 2 8 8 N 1.34782 * 120.00131 * 174.57954 * 6 3 2 9 9 C 1.46920 * 120.62930 * 356.02348 * 8 6 3 10 10 C 1.53194 * 108.77706 * 233.62902 * 9 8 6 11 11 C 1.53045 * 109.31231 * 305.36958 * 10 9 8 12 12 C 1.53043 * 109.53912 * 61.36005 * 11 10 9 13 13 C 1.53001 * 109.52037 * 178.66657 * 12 11 10 14 14 O 1.42894 * 109.47441 * 297.30814 * 13 12 11 15 15 N 1.46904 * 109.49224 * 58.58875 * 12 11 10 16 16 C 1.46905 * 110.99467 * 175.86812 * 15 12 11 17 17 C 1.50701 * 109.47066 * 182.99213 * 16 15 12 18 18 O 1.21296 * 119.99506 * 359.97438 * 17 16 15 19 19 N 1.34772 * 120.00244 * 179.97438 * 17 16 15 20 20 C 1.37091 * 119.99868 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00630 * 359.97438 * 20 19 17 22 22 C 1.38957 * 119.99786 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99853 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99902 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47250 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46636 * 120.00775 * 24 22 20 27 27 H 1.48504 * 109.47250 * 240.00013 * 24 22 20 28 28 C 1.46923 * 120.62961 * 176.04524 * 8 6 3 29 29 H 1.08996 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47249 * 300.00642 * 1 2 3 31 31 H 1.09006 * 109.47155 * 60.00423 * 1 2 3 32 32 H 1.09008 * 109.46763 * 65.22883 * 5 3 2 33 33 H 1.09002 * 109.47311 * 185.22925 * 5 3 2 34 34 H 1.08994 * 109.46636 * 305.23238 * 5 3 2 35 35 H 1.08997 * 109.58904 * 353.41982 * 9 8 6 36 36 H 1.09001 * 109.58776 * 113.70261 * 9 8 6 37 37 H 1.08999 * 109.49649 * 65.31460 * 10 9 8 38 38 H 1.08993 * 109.49844 * 185.38346 * 10 9 8 39 39 H 1.09005 * 109.45572 * 301.33981 * 11 10 9 40 40 H 1.08993 * 109.46068 * 181.38746 * 11 10 9 41 41 H 1.08996 * 109.46768 * 57.31249 * 13 12 11 42 42 H 1.09003 * 109.46551 * 177.30397 * 13 12 11 43 43 H 0.96700 * 114.00451 * 180.02562 * 14 13 12 44 44 H 1.00895 * 110.99967 * 299.81555 * 15 12 11 45 45 H 1.09001 * 109.46649 * 302.99010 * 16 15 12 46 46 H 1.08992 * 109.47067 * 62.99199 * 16 15 12 47 47 H 0.97000 * 119.99324 * 359.97438 * 19 17 16 48 48 H 0.96998 * 120.00205 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.59224 * 6.58560 * 28 8 6 50 50 H 1.08996 * 109.70580 * 246.22808 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2176 1.7715 1.4425 6 6 3.3386 1.2639 -0.7103 7 8 3.7932 0.2036 -1.0846 8 7 4.0214 2.4050 -0.9299 9 6 3.4450 3.7050 -0.5609 10 6 3.4736 4.6230 -1.7870 11 6 4.9030 4.7000 -2.3284 12 6 5.3634 3.3052 -2.7583 13 6 6.7801 3.3881 -3.3302 14 8 6.7748 4.2109 -4.4984 15 7 4.4506 2.7820 -3.7835 16 6 4.9171 1.4848 -4.2911 17 6 3.9985 1.0154 -5.3897 18 8 3.0484 1.6946 -5.7172 19 7 4.2327 -0.1589 -6.0083 20 6 3.3967 -0.5860 -7.0073 21 1 2.5502 0.0182 -7.2984 22 6 3.6385 -1.7965 -7.6454 23 7 4.6681 -2.5320 -7.2909 24 14 2.4990 -2.3789 -9.0062 25 1 1.4230 -1.3767 -9.2137 26 1 3.2724 -2.5419 -10.2634 27 1 1.8961 -3.6810 -8.6237 28 6 5.3562 2.3724 -1.5431 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 2.9542 1.1317 1.9286 33 1 2.5737 2.8017 1.4439 34 1 1.2727 1.7130 1.9825 35 1 2.4152 3.5678 -0.2311 36 1 4.0304 4.1491 0.2442 37 1 2.8142 4.2223 -2.5569 38 1 3.1374 5.6201 -1.5029 39 1 5.5662 5.0775 -1.5501 40 1 4.9308 5.3720 -3.1861 41 1 7.4480 3.8196 -2.5848 42 1 7.1253 2.3878 -3.5917 43 1 7.6420 4.3080 -4.9151 44 1 3.5087 2.7137 -3.4281 45 1 5.9285 1.5907 -4.6835 46 1 4.9163 0.7559 -3.4807 47 1 4.9928 -0.7017 -5.7465 48 1 4.8367 -3.3771 -7.7360 49 1 5.5874 1.3559 -1.8615 50 1 6.1007 2.7074 -0.8209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570279431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:55 Heat of formation + Delta-G solvation = -178.903919 kcal Electronic energy + Delta-G solvation = -32741.450687 eV Core-core repulsion = 28382.160088 eV Total energy + Delta-G solvation = -4359.290599 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.92502 -40.37949 -39.61947 -38.46709 -37.31273 -36.14952 -35.58482 -33.63125 -33.24235 -32.64037 -31.36457 -28.17365 -27.80038 -27.08230 -26.91315 -25.80415 -24.37701 -23.11489 -21.17374 -20.89016 -20.00020 -19.70602 -18.59491 -18.36991 -18.02158 -17.63182 -17.24497 -16.92312 -16.58092 -16.31568 -16.14533 -15.82979 -15.73058 -15.52304 -15.42746 -15.14607 -14.62315 -14.43113 -14.31652 -14.12537 -13.95225 -13.87971 -13.57999 -13.43276 -13.34256 -13.18312 -12.99289 -12.85962 -12.79410 -12.45878 -12.41719 -12.18649 -12.13632 -11.83531 -11.71925 -11.55155 -11.36173 -11.01479 -10.78387 -10.55527 -10.39137 -10.06030 -9.89775 -9.18352 -8.49686 -5.99480 1.33584 1.37138 1.45450 1.53147 1.65472 1.99819 2.26204 2.81930 2.88237 3.16073 3.29608 3.41364 3.49410 3.70535 3.80890 3.82863 3.95977 4.07656 4.13237 4.23652 4.27258 4.31194 4.37809 4.40715 4.44270 4.47857 4.48816 4.60434 4.63107 4.66118 4.75140 4.77448 4.79330 4.82286 4.86501 5.05836 5.16716 5.35400 5.37191 5.43116 5.44042 5.87282 6.00073 6.09316 6.28930 6.35292 6.55120 7.02523 7.07193 7.07748 7.50019 8.05315 8.68583 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009144 B = 0.004001 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.357799 B = 6996.540852 C = 9154.605288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.067 3.933 4 H 0.105 0.895 5 C -0.162 4.162 6 C 0.501 3.499 7 O -0.575 6.575 8 N -0.602 5.602 9 C 0.097 3.903 10 C -0.139 4.139 11 C -0.092 4.092 12 C 0.098 3.902 13 C 0.087 3.913 14 O -0.572 6.572 15 N -0.645 5.645 16 C 0.067 3.933 17 C 0.440 3.560 18 O -0.621 6.621 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.998 3.002 25 H -0.272 1.272 26 H -0.266 1.266 27 H -0.270 1.270 28 C 0.081 3.919 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.043 0.957 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.037 0.963 43 H 0.390 0.610 44 H 0.334 0.666 45 H 0.100 0.900 46 H 0.044 0.956 47 H 0.393 0.607 48 H 0.278 0.722 49 H 0.064 0.936 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 16.076 21.656 26.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.006 3.994 4 H 0.122 0.878 5 C -0.219 4.219 6 C 0.290 3.710 7 O -0.453 6.453 8 N -0.336 5.336 9 C -0.024 4.024 10 C -0.177 4.177 11 C -0.130 4.130 12 C 0.006 3.994 13 C 0.008 3.992 14 O -0.379 6.379 15 N -0.277 5.277 16 C -0.066 4.066 17 C 0.227 3.773 18 O -0.508 6.508 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.821 3.179 25 H -0.197 1.197 26 H -0.191 1.191 27 H -0.195 1.195 28 C -0.044 4.044 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.062 0.938 38 H 0.129 0.871 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.055 0.945 43 H 0.238 0.762 44 H 0.154 0.846 45 H 0.118 0.882 46 H 0.061 0.939 47 H 0.226 0.774 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.582 16.016 20.810 26.266 hybrid contribution 0.160 -1.717 -0.446 1.782 sum 0.742 14.298 20.364 24.893 Atomic orbital electron populations 1.23072 0.78735 1.04073 1.01387 1.88011 1.21899 1.26842 1.95219 1.22134 0.91914 0.86659 0.98666 0.87777 1.22313 1.04353 1.03145 0.92131 1.21206 0.87306 0.83537 0.78988 1.90731 1.70417 1.31905 1.52247 1.48027 1.17873 1.06858 1.60878 1.22344 1.00889 0.81122 0.98063 1.21993 0.97270 1.01448 0.97033 1.21430 0.96821 0.93409 1.01344 1.21610 0.93056 0.96299 0.88442 1.22169 0.94551 0.94138 0.88332 1.86598 1.36861 1.71065 1.43365 1.60273 1.05207 1.24451 1.37779 1.21496 0.98476 0.91733 0.94871 1.20797 0.87995 0.82189 0.86286 1.90449 1.34134 1.57185 1.69024 1.41929 1.27376 1.18590 1.33114 1.19724 1.08975 1.04601 1.13178 0.90353 1.26143 0.98793 0.95462 1.01060 1.69700 1.29068 1.14084 1.43465 0.84809 0.77744 0.78026 0.77325 1.19676 1.19110 1.19507 1.22270 0.84849 1.01074 0.96192 0.89003 0.90719 0.93845 0.92704 0.87663 0.89153 0.87833 0.87059 0.93842 0.87132 0.88243 0.91641 0.89609 0.94474 0.76166 0.84586 0.88193 0.93859 0.77410 0.91237 0.91751 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.82 113.37 1.23 1.69 16 2 O -0.40 -11.80 9.89 -130.00 -1.29 -13.09 16 3 C 0.07 1.52 2.29 29.85 0.07 1.59 16 4 H 0.10 1.89 6.87 -2.39 -0.02 1.87 16 5 C -0.16 -2.17 9.15 71.98 0.66 -1.52 16 6 C 0.50 15.09 7.09 87.66 0.62 15.71 16 7 O -0.57 -24.42 15.85 15.95 0.25 -24.17 16 8 N -0.60 -13.29 2.47 -818.92 -2.02 -15.32 16 9 C 0.10 1.18 5.01 86.36 0.43 1.61 16 10 C -0.14 -2.14 5.76 30.67 0.18 -1.97 16 11 C -0.09 -1.66 4.79 30.62 0.15 -1.51 16 12 C 0.10 2.37 0.47 3.61 0.00 2.37 16 13 C 0.09 1.85 5.35 71.98 0.38 2.23 16 14 O -0.57 -14.15 12.89 -148.98 -1.92 -16.07 16 15 N -0.65 -23.19 5.40 -473.74 -2.56 -25.75 16 16 C 0.07 2.80 5.39 85.56 0.46 3.26 16 17 C 0.44 24.12 7.83 87.66 0.69 24.80 16 18 O -0.62 -38.24 15.84 -3.08 -0.05 -38.28 16 19 N -0.57 -33.30 5.29 -306.99 -1.62 -34.92 16 20 C -0.34 -20.79 9.68 84.04 0.81 -19.98 16 21 H 0.08 5.13 7.16 -2.91 -0.02 5.11 16 22 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 23 N -0.92 -53.66 13.05 21.66 0.28 -53.38 16 24 Si 1.00 45.79 29.55 68.60 2.03 47.82 16 25 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 28 C 0.08 1.86 5.04 86.36 0.44 2.30 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 0.97 7.78 -2.38 -0.02 0.95 16 31 H 0.04 0.87 8.09 -2.38 -0.02 0.85 16 32 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.10 0.75 5.79 -2.39 -0.01 0.73 16 34 H 0.09 0.87 7.78 -2.39 -0.02 0.86 16 35 H 0.10 0.91 4.85 -2.39 -0.01 0.90 16 36 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.04 1.00 6.59 -2.39 -0.02 0.98 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.06 1.49 7.72 -2.39 -0.02 1.48 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.04 0.87 6.43 -2.39 -0.02 0.85 16 43 H 0.39 6.09 9.12 -74.06 -0.68 5.41 16 44 H 0.33 13.07 6.18 -89.70 -0.55 12.51 16 45 H 0.10 3.87 6.12 -2.39 -0.01 3.85 16 46 H 0.04 1.89 6.38 -2.39 -0.02 1.87 16 47 H 0.39 22.10 7.90 -92.71 -0.73 21.36 16 48 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 49 H 0.06 1.98 5.18 -2.39 -0.01 1.97 16 50 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -91.49 390.95 -1.27 -92.77 By element: Atomic # 1 Polarization: 51.16 SS G_CDS: -0.96 Total: 50.20 kcal Atomic # 6 Polarization: 23.61 SS G_CDS: 6.58 Total: 30.19 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -5.92 Total: -129.37 kcal Atomic # 8 Polarization: -88.61 SS G_CDS: -3.00 Total: -91.61 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -91.49 -1.27 -92.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570279431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.137 kcal (2) G-P(sol) polarization free energy of solvation -91.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds