Wall clock time and date at job start Wed Apr 1 2020 02:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00186 * 2 1 4 4 H 1.09000 * 109.47427 * 29.99364 * 3 2 1 5 5 C 1.53007 * 109.46717 * 269.99613 * 3 2 1 6 6 C 1.50696 * 109.47393 * 149.99791 * 3 2 1 7 7 O 1.21280 * 120.00037 * 10.89114 * 6 3 2 8 8 N 1.34779 * 120.00204 * 190.88482 * 6 3 2 9 9 C 1.46927 * 120.62861 * 5.12548 * 8 6 3 10 10 C 1.53188 * 108.77678 * 233.58183 * 9 8 6 11 11 C 1.53043 * 109.31503 * 305.36677 * 10 9 8 12 12 C 1.53041 * 109.53700 * 61.36144 * 11 10 9 13 13 C 1.52995 * 109.49914 * 178.65369 * 12 11 10 14 14 O 1.42898 * 109.47139 * 298.73017 * 13 12 11 15 15 N 1.46900 * 109.49437 * 58.58918 * 12 11 10 16 16 C 1.46905 * 110.99552 * 176.20192 * 15 12 11 17 17 C 1.50706 * 109.46939 * 182.12097 * 16 15 12 18 18 O 1.21290 * 119.99825 * 359.97438 * 17 16 15 19 19 N 1.34771 * 119.99902 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00093 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00111 * 359.97438 * 20 19 17 22 22 C 1.38956 * 120.00480 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99205 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00375 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46922 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47214 * 119.99844 * 24 22 20 27 27 H 1.48496 * 109.47216 * 240.00148 * 24 22 20 28 28 C 1.46924 * 120.63151 * 184.83939 * 8 6 3 29 29 H 1.08996 * 109.46464 * 60.00330 * 1 2 3 30 30 H 1.08998 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46943 * 300.00831 * 1 2 3 32 32 H 1.08993 * 109.47319 * 295.27000 * 5 3 2 33 33 H 1.09001 * 109.47208 * 175.27331 * 5 3 2 34 34 H 1.08999 * 109.47086 * 55.27235 * 5 3 2 35 35 H 1.08997 * 109.58774 * 353.37313 * 9 8 6 36 36 H 1.09000 * 109.58757 * 113.65294 * 9 8 6 37 37 H 1.09002 * 109.49869 * 65.31688 * 10 9 8 38 38 H 1.09000 * 109.50220 * 185.38138 * 10 9 8 39 39 H 1.08992 * 109.46181 * 181.38715 * 11 10 9 40 40 H 1.09005 * 109.45792 * 301.35791 * 11 10 9 41 41 H 1.09006 * 109.46807 * 58.72250 * 13 12 11 42 42 H 1.08996 * 109.47513 * 178.72685 * 13 12 11 43 43 H 0.96701 * 114.00244 * 179.97438 * 14 13 12 44 44 H 1.00892 * 111.00113 * 300.15113 * 15 12 11 45 45 H 1.09002 * 109.47039 * 302.12286 * 16 15 12 46 46 H 1.09005 * 109.47184 * 62.12373 * 16 15 12 47 47 H 0.97006 * 120.00183 * 359.97438 * 19 17 16 48 48 H 0.97004 * 119.99445 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.58687 * 246.20226 * 28 8 6 50 50 H 1.08993 * 109.58637 * 6.63593 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2178 1.7712 -1.4426 6 6 3.3386 1.2638 0.7104 7 8 3.8403 0.1973 0.9964 8 7 3.9693 2.4119 1.0279 9 6 3.3248 3.7106 0.7897 10 6 4.2701 4.5854 -0.0396 11 6 5.6252 4.6762 0.6658 12 6 6.2371 3.2782 0.7808 13 6 7.6066 3.3740 1.4559 14 8 8.4748 4.1827 0.6595 15 7 6.3910 2.6986 -0.5603 16 6 7.0590 1.3918 -0.4954 17 6 7.2457 0.8534 -1.8906 18 8 6.8598 1.4949 -2.8449 19 7 7.8405 -0.3414 -2.0778 20 6 8.0108 -0.8310 -3.3469 21 1 7.6680 -0.2595 -4.1967 22 6 8.6246 -2.0626 -3.5400 23 7 9.0422 -2.7578 -2.5059 24 14 8.8560 -2.7301 -5.2692 25 1 8.3028 -1.7630 -6.2512 26 1 10.3036 -2.9306 -5.5328 27 1 8.1450 -4.0273 -5.3984 28 6 5.3117 2.3883 1.6246 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 2.9478 1.1260 -1.9313 33 1 2.5825 2.7984 -1.4439 34 1 1.2710 1.7211 -1.9803 35 1 2.3926 3.5615 0.2448 36 1 3.1169 4.1958 1.7434 37 1 4.4029 4.1431 -1.0269 38 1 3.8454 5.5840 -0.1425 39 1 6.2919 5.3182 0.0903 40 1 5.4883 5.0956 1.6626 41 1 7.4946 3.8240 2.4425 42 1 8.0321 2.3758 1.5580 43 1 9.3626 4.2876 1.0280 44 1 5.4996 2.6262 -1.0274 45 1 8.0315 1.5043 -0.0162 46 1 6.4470 0.6992 0.0825 47 1 8.1488 -0.8546 -1.3145 48 1 9.4703 -3.6178 -2.6407 49 1 5.2648 2.7690 2.6449 50 1 5.6909 1.3665 1.6307 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570279433.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:59 Heat of formation + Delta-G solvation = -145.788129 kcal Electronic energy + Delta-G solvation = -32895.215301 eV Core-core repulsion = 28537.360711 eV Total energy + Delta-G solvation = -4357.854590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.91672 -39.07885 -37.87333 -37.42513 -36.34680 -34.61838 -33.73919 -32.50535 -31.82774 -31.09182 -30.20679 -27.01663 -26.48702 -26.22698 -25.85864 -23.95169 -23.43007 -22.30703 -19.89587 -19.21149 -18.62405 -17.83889 -17.68042 -17.39899 -16.86510 -16.30647 -15.88717 -15.71145 -15.41974 -14.93751 -14.85117 -14.55394 -14.41168 -14.28424 -13.94565 -13.85346 -13.60868 -13.39487 -13.22392 -12.99913 -12.78163 -12.54844 -12.48970 -12.21379 -12.05906 -11.93174 -11.80294 -11.43363 -11.33591 -11.29353 -11.02616 -10.96977 -10.85265 -10.45668 -10.26514 -10.11833 -10.10521 -9.86619 -9.54248 -9.40453 -8.91077 -8.30164 -7.86993 -7.81299 -6.30301 -3.70414 2.48044 2.57968 3.24070 3.33405 3.41076 3.66028 4.04728 4.07201 4.22866 4.30165 4.43358 4.46786 4.61934 4.67072 4.77661 4.84371 4.94783 5.07717 5.11135 5.13916 5.17218 5.22916 5.25571 5.32397 5.36942 5.41012 5.46252 5.48689 5.53728 5.56901 5.58957 5.63345 5.85812 6.00408 6.07189 6.11154 6.19838 6.23411 6.32119 6.41630 6.84097 7.21004 7.34054 7.65906 7.69474 7.78811 8.09604 8.18373 8.73937 9.29631 9.67439 10.19310 10.87869 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008939 B = 0.004117 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.418085 B = 6799.466275 C = 8912.235528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.074 3.926 4 H 0.081 0.919 5 C -0.177 4.177 6 C 0.515 3.485 7 O -0.508 6.508 8 N -0.610 5.610 9 C 0.100 3.900 10 C -0.142 4.142 11 C -0.098 4.098 12 C 0.103 3.897 13 C 0.090 3.910 14 O -0.547 6.547 15 N -0.635 5.635 16 C 0.043 3.957 17 C 0.448 3.552 18 O -0.584 6.584 19 N -0.565 5.565 20 C -0.295 4.295 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.928 3.072 25 H -0.269 1.269 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.080 3.920 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.372 0.628 44 H 0.346 0.654 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.071 0.929 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.602 14.869 12.932 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.275 6.275 3 C 0.012 3.988 4 H 0.099 0.901 5 C -0.234 4.234 6 C 0.302 3.698 7 O -0.381 6.381 8 N -0.346 5.346 9 C -0.023 4.023 10 C -0.180 4.180 11 C -0.136 4.136 12 C 0.010 3.990 13 C 0.011 3.989 14 O -0.351 6.351 15 N -0.268 5.268 16 C -0.090 4.090 17 C 0.233 3.767 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.425 4.425 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.045 4.045 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.218 0.782 44 H 0.167 0.833 45 H 0.104 0.896 46 H 0.064 0.936 47 H 0.224 0.776 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.365 14.701 11.895 23.157 hybrid contribution -0.092 -1.144 0.466 1.238 sum -13.457 13.557 12.361 22.753 Atomic orbital electron populations 1.22880 0.80752 1.03312 0.99823 1.88102 1.19498 1.25023 1.94908 1.21915 0.93143 0.86702 0.97002 0.90083 1.22337 1.03993 1.02556 0.94528 1.20442 0.86787 0.83702 0.78913 1.90757 1.66399 1.29001 1.51927 1.47908 1.17469 1.05833 1.63398 1.21950 0.96387 0.83576 1.00380 1.22009 0.95734 1.00041 1.00256 1.21424 0.95913 0.95625 1.00591 1.21417 0.92737 0.95078 0.89785 1.22059 0.90014 0.94614 0.92257 1.86641 1.25663 1.71925 1.50832 1.60249 1.27850 1.24042 1.14619 1.21798 0.99790 0.90168 0.97232 1.19732 0.84087 0.83072 0.89792 1.90498 1.54509 1.59280 1.42499 1.41839 1.52330 1.16801 1.09156 1.19731 1.35731 1.01973 0.85069 0.87983 1.25247 0.97139 0.96382 0.99270 1.69634 1.40648 1.14208 1.29897 0.85816 0.77814 0.78691 0.82097 1.19283 1.20819 1.20829 1.22400 0.82321 1.03224 0.96525 0.93753 0.89083 0.94076 0.90272 0.90536 0.91029 0.89628 0.91051 0.90235 0.90306 0.89513 0.91884 0.93648 0.93269 0.78188 0.83290 0.89594 0.93557 0.77557 0.92051 0.91090 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.36 16 2 O -0.36 -5.10 9.90 -54.90 -0.54 -5.65 16 3 C 0.07 0.89 2.28 -27.88 -0.06 0.83 16 4 H 0.08 0.68 6.75 -51.93 -0.35 0.33 16 5 C -0.18 -2.02 9.20 37.16 0.34 -1.68 16 6 C 0.51 7.71 7.02 -10.99 -0.08 7.64 16 7 O -0.51 -10.10 15.97 -14.11 -0.23 -10.32 16 8 N -0.61 -7.22 2.47 -172.51 -0.43 -7.65 16 9 C 0.10 0.80 5.60 -3.71 -0.02 0.78 16 10 C -0.14 -1.27 5.66 -26.61 -0.15 -1.42 16 11 C -0.10 -1.01 4.77 -26.69 -0.13 -1.13 16 12 C 0.10 1.30 0.47 -131.25 -0.06 1.23 16 13 C 0.09 1.02 5.41 37.16 0.20 1.22 16 14 O -0.55 -6.95 12.86 -35.23 -0.45 -7.40 16 15 N -0.63 -10.91 5.45 -100.86 -0.55 -11.46 16 16 C 0.04 0.84 5.39 -4.97 -0.03 0.81 16 17 C 0.45 11.46 7.82 -10.98 -0.09 11.37 16 18 O -0.58 -16.74 15.83 5.55 0.09 -16.66 16 19 N -0.56 -15.42 5.29 -10.96 -0.06 -15.48 16 20 C -0.30 -8.71 9.68 -14.93 -0.14 -8.85 16 21 H 0.10 3.14 7.16 -52.49 -0.38 2.77 16 22 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 23 N -0.90 -25.86 13.05 55.50 0.72 -25.14 16 24 Si 0.93 22.06 29.55 -169.99 -5.02 17.04 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 C 0.08 0.97 5.04 -3.48 -0.02 0.96 16 29 H 0.04 0.33 7.79 -51.93 -0.40 -0.07 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 0.73 5.81 -51.93 -0.30 0.43 16 34 H 0.07 0.67 7.79 -51.93 -0.40 0.27 16 35 H 0.09 0.56 4.56 -51.93 -0.24 0.32 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.91 6.24 -51.93 -0.32 0.58 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.06 7.68 -51.93 -0.40 0.66 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 0.58 6.37 -51.93 -0.33 0.25 16 43 H 0.37 3.06 9.12 45.56 0.42 3.48 16 44 H 0.35 6.29 6.14 -39.30 -0.24 6.04 16 45 H 0.09 1.58 6.14 -51.93 -0.32 1.26 16 46 H 0.05 0.92 6.42 -51.93 -0.33 0.59 16 47 H 0.39 10.37 7.90 -40.82 -0.32 10.05 16 48 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.10 1.47 5.22 -51.93 -0.27 1.20 16 LS Contribution 390.83 15.07 5.89 5.89 Total: -1.00 -38.44 390.83 -6.53 -44.96 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -6.71 Total: 18.25 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 0.76 Total: 13.61 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.31 Total: -59.72 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -1.13 Total: -40.03 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.44 -6.53 -44.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570279433.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.827 kcal (2) G-P(sol) polarization free energy of solvation -38.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds