Wall clock time and date at job start Wed Apr 1 2020 02:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 114.00186 * 2 1 4 4 H 1.09000 * 109.47427 * 29.99364 * 3 2 1 5 5 C 1.53007 * 109.46717 * 269.99613 * 3 2 1 6 6 C 1.50696 * 109.47393 * 149.99791 * 3 2 1 7 7 O 1.21280 * 120.00037 * 10.89114 * 6 3 2 8 8 N 1.34779 * 120.00204 * 190.88482 * 6 3 2 9 9 C 1.46927 * 120.62861 * 5.12548 * 8 6 3 10 10 C 1.53188 * 108.77678 * 233.58183 * 9 8 6 11 11 C 1.53043 * 109.31503 * 305.36677 * 10 9 8 12 12 C 1.53041 * 109.53700 * 61.36144 * 11 10 9 13 13 C 1.52995 * 109.49914 * 178.65369 * 12 11 10 14 14 O 1.42898 * 109.47139 * 298.73017 * 13 12 11 15 15 N 1.46900 * 109.49437 * 58.58918 * 12 11 10 16 16 C 1.46905 * 110.99552 * 176.20192 * 15 12 11 17 17 C 1.50706 * 109.46939 * 182.12097 * 16 15 12 18 18 O 1.21290 * 119.99825 * 359.97438 * 17 16 15 19 19 N 1.34771 * 119.99902 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00093 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00111 * 359.97438 * 20 19 17 22 22 C 1.38956 * 120.00480 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99205 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00375 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46922 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47214 * 119.99844 * 24 22 20 27 27 H 1.48496 * 109.47216 * 240.00148 * 24 22 20 28 28 C 1.46924 * 120.63151 * 184.83939 * 8 6 3 29 29 H 1.08996 * 109.46464 * 60.00330 * 1 2 3 30 30 H 1.08998 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46943 * 300.00831 * 1 2 3 32 32 H 1.08993 * 109.47319 * 295.27000 * 5 3 2 33 33 H 1.09001 * 109.47208 * 175.27331 * 5 3 2 34 34 H 1.08999 * 109.47086 * 55.27235 * 5 3 2 35 35 H 1.08997 * 109.58774 * 353.37313 * 9 8 6 36 36 H 1.09000 * 109.58757 * 113.65294 * 9 8 6 37 37 H 1.09002 * 109.49869 * 65.31688 * 10 9 8 38 38 H 1.09000 * 109.50220 * 185.38138 * 10 9 8 39 39 H 1.08992 * 109.46181 * 181.38715 * 11 10 9 40 40 H 1.09005 * 109.45792 * 301.35791 * 11 10 9 41 41 H 1.09006 * 109.46807 * 58.72250 * 13 12 11 42 42 H 1.08996 * 109.47513 * 178.72685 * 13 12 11 43 43 H 0.96701 * 114.00244 * 179.97438 * 14 13 12 44 44 H 1.00892 * 111.00113 * 300.15113 * 15 12 11 45 45 H 1.09002 * 109.47039 * 302.12286 * 16 15 12 46 46 H 1.09005 * 109.47184 * 62.12373 * 16 15 12 47 47 H 0.97006 * 120.00183 * 359.97438 * 19 17 16 48 48 H 0.97004 * 119.99445 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.58687 * 246.20226 * 28 8 6 50 50 H 1.08993 * 109.58637 * 6.63593 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5137 5 6 2.2178 1.7712 -1.4426 6 6 3.3386 1.2638 0.7104 7 8 3.8403 0.1973 0.9964 8 7 3.9693 2.4119 1.0279 9 6 3.3248 3.7106 0.7897 10 6 4.2701 4.5854 -0.0396 11 6 5.6252 4.6762 0.6658 12 6 6.2371 3.2782 0.7808 13 6 7.6066 3.3740 1.4559 14 8 8.4748 4.1827 0.6595 15 7 6.3910 2.6986 -0.5603 16 6 7.0590 1.3918 -0.4954 17 6 7.2457 0.8534 -1.8906 18 8 6.8598 1.4949 -2.8449 19 7 7.8405 -0.3414 -2.0778 20 6 8.0108 -0.8310 -3.3469 21 1 7.6680 -0.2595 -4.1967 22 6 8.6246 -2.0626 -3.5400 23 7 9.0422 -2.7578 -2.5059 24 14 8.8560 -2.7301 -5.2692 25 1 8.3028 -1.7630 -6.2512 26 1 10.3036 -2.9306 -5.5328 27 1 8.1450 -4.0273 -5.3984 28 6 5.3117 2.3883 1.6246 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 2.9478 1.1260 -1.9313 33 1 2.5825 2.7984 -1.4439 34 1 1.2710 1.7211 -1.9803 35 1 2.3926 3.5615 0.2448 36 1 3.1169 4.1958 1.7434 37 1 4.4029 4.1431 -1.0269 38 1 3.8454 5.5840 -0.1425 39 1 6.2919 5.3182 0.0903 40 1 5.4883 5.0956 1.6626 41 1 7.4946 3.8240 2.4425 42 1 8.0321 2.3758 1.5580 43 1 9.3626 4.2876 1.0280 44 1 5.4996 2.6262 -1.0274 45 1 8.0315 1.5043 -0.0162 46 1 6.4470 0.6992 0.0825 47 1 8.1488 -0.8546 -1.3145 48 1 9.4703 -3.6178 -2.6407 49 1 5.2648 2.7690 2.6449 50 1 5.6909 1.3665 1.6307 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570279433.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:58 Heat of formation + Delta-G solvation = -179.317567 kcal Electronic energy + Delta-G solvation = -32896.669247 eV Core-core repulsion = 28537.360711 eV Total energy + Delta-G solvation = -4359.308536 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93119 -40.37221 -39.61007 -38.47741 -37.31132 -36.14272 -35.55938 -33.58943 -33.23078 -32.76243 -31.32589 -28.16320 -27.78597 -27.14926 -26.89143 -25.80091 -24.33935 -23.18697 -21.18031 -20.87105 -19.98541 -19.61901 -18.70070 -18.35550 -18.02539 -17.64797 -17.15725 -16.87800 -16.59769 -16.39394 -16.11055 -15.88438 -15.71060 -15.55430 -15.35535 -15.15822 -14.64170 -14.61144 -14.31905 -14.13285 -13.92797 -13.66177 -13.60275 -13.50451 -13.28233 -13.16498 -13.12078 -12.88089 -12.81382 -12.45289 -12.40906 -12.17267 -12.13338 -11.88039 -11.72589 -11.54614 -11.35303 -10.99570 -10.78234 -10.57245 -10.38204 -10.05584 -9.90856 -9.18940 -8.49396 -5.99003 1.33852 1.37541 1.41527 1.53398 1.66532 1.99987 2.26427 2.81905 2.88920 3.16449 3.30065 3.39512 3.49134 3.69629 3.79965 3.81152 3.92481 4.07320 4.12402 4.22734 4.25708 4.30719 4.39008 4.40633 4.43786 4.50224 4.51472 4.53255 4.60811 4.63712 4.69029 4.78276 4.81107 4.81998 4.87031 5.04982 5.13803 5.36192 5.37873 5.43640 5.44825 5.87513 6.01968 6.09118 6.29178 6.36318 6.55299 7.02248 7.05822 7.08147 7.50422 8.05467 8.68846 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008939 B = 0.004117 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.418085 B = 6799.466275 C = 8912.235528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.403 6.403 3 C 0.076 3.924 4 H 0.128 0.872 5 C -0.170 4.170 6 C 0.502 3.498 7 O -0.574 6.574 8 N -0.603 5.603 9 C 0.095 3.905 10 C -0.139 4.139 11 C -0.092 4.092 12 C 0.099 3.901 13 C 0.087 3.913 14 O -0.572 6.572 15 N -0.644 5.644 16 C 0.066 3.934 17 C 0.440 3.560 18 O -0.619 6.619 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.016 4.016 23 N -0.922 5.922 24 Si 0.998 3.002 25 H -0.272 1.272 26 H -0.266 1.266 27 H -0.271 1.271 28 C 0.081 3.919 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.027 0.973 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.047 0.953 38 H 0.111 0.889 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.037 0.963 43 H 0.390 0.610 44 H 0.337 0.663 45 H 0.101 0.899 46 H 0.041 0.959 47 H 0.393 0.607 48 H 0.278 0.722 49 H 0.106 0.894 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.003 17.032 14.194 26.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.322 6.322 3 C 0.015 3.985 4 H 0.146 0.854 5 C -0.227 4.227 6 C 0.290 3.710 7 O -0.452 6.452 8 N -0.337 5.337 9 C -0.026 4.026 10 C -0.177 4.177 11 C -0.130 4.130 12 C 0.006 3.994 13 C 0.008 3.992 14 O -0.378 6.378 15 N -0.277 5.277 16 C -0.067 4.067 17 C 0.227 3.773 18 O -0.505 6.505 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.821 3.179 25 H -0.196 1.196 26 H -0.191 1.191 27 H -0.196 1.196 28 C -0.043 4.043 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.066 0.934 38 H 0.129 0.871 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.103 0.897 42 H 0.055 0.945 43 H 0.239 0.761 44 H 0.157 0.843 45 H 0.118 0.882 46 H 0.059 0.941 47 H 0.226 0.774 48 H 0.087 0.913 49 H 0.124 0.876 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.757 16.921 13.198 26.044 hybrid contribution 0.344 -1.744 0.114 1.781 sum -14.413 15.177 13.312 24.805 Atomic orbital electron populations 1.23121 0.78385 1.04164 1.01766 1.88056 1.22296 1.26657 1.95147 1.22049 0.92397 0.87039 0.97005 0.85436 1.22308 1.03787 1.02370 0.94276 1.21170 0.87821 0.83566 0.78399 1.90717 1.68219 1.31489 1.54823 1.48050 1.17135 1.06596 1.61931 1.22307 0.96445 0.81412 1.02391 1.22001 0.95500 1.01687 0.98545 1.21422 0.95932 0.93286 1.02358 1.21681 0.94161 0.96156 0.87361 1.22158 0.89036 0.94366 0.93621 1.86588 1.27143 1.72024 1.52086 1.60290 1.27361 1.22015 1.18011 1.21510 1.00832 0.91453 0.92881 1.20769 0.82409 0.82210 0.91886 1.90453 1.55585 1.60058 1.44445 1.41935 1.52938 1.17513 1.08660 1.19724 1.38053 1.03193 0.85408 0.90292 1.26139 0.95860 0.95827 1.03662 1.69707 1.40248 1.14569 1.31815 0.84813 0.78481 0.77951 0.76695 1.19647 1.19130 1.19578 1.22365 0.82439 1.01296 0.98251 0.91932 0.89011 0.91832 0.95348 0.88601 0.88626 0.87728 0.87431 0.93379 0.87079 0.91474 0.88426 0.89733 0.94484 0.76146 0.84303 0.88154 0.94091 0.77428 0.91265 0.87569 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.58 16 2 O -0.40 -11.56 9.90 -130.17 -1.29 -12.85 16 3 C 0.08 1.76 2.28 29.85 0.07 1.83 16 4 H 0.13 1.69 6.75 -2.39 -0.02 1.67 16 5 C -0.17 -3.84 9.20 71.98 0.66 -3.17 16 6 C 0.50 15.21 7.02 87.66 0.62 15.82 16 7 O -0.57 -24.25 15.97 15.78 0.25 -24.00 16 8 N -0.60 -13.43 2.47 -818.08 -2.02 -15.45 16 9 C 0.10 1.17 5.60 86.36 0.48 1.66 16 10 C -0.14 -2.07 5.66 30.67 0.17 -1.90 16 11 C -0.09 -1.64 4.77 30.62 0.15 -1.49 16 12 C 0.10 2.36 0.47 3.75 0.00 2.36 16 13 C 0.09 1.84 5.41 71.98 0.39 2.23 16 14 O -0.57 -13.86 12.86 -148.98 -1.92 -15.78 16 15 N -0.64 -22.73 5.45 -473.00 -2.58 -25.30 16 16 C 0.07 2.73 5.39 85.56 0.46 3.19 16 17 C 0.44 23.82 7.82 87.66 0.69 24.51 16 18 O -0.62 -37.54 15.83 -3.06 -0.05 -37.58 16 19 N -0.57 -33.07 5.29 -306.99 -1.62 -34.69 16 20 C -0.33 -20.62 9.68 84.04 0.81 -19.80 16 21 H 0.08 5.14 7.16 -2.91 -0.02 5.12 16 22 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 23 N -0.92 -53.57 13.05 21.67 0.28 -53.29 16 24 Si 1.00 45.74 29.55 68.60 2.03 47.77 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 C 0.08 1.88 5.04 86.51 0.44 2.32 16 29 H 0.06 0.80 7.79 -2.39 -0.02 0.78 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 0.76 8.08 -2.39 -0.02 0.74 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 1.71 5.81 -2.39 -0.01 1.70 16 34 H 0.09 1.65 7.79 -2.39 -0.02 1.63 16 35 H 0.10 0.91 4.56 -2.39 -0.01 0.90 16 36 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.05 1.05 6.24 -2.39 -0.01 1.03 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 1.50 7.68 -2.39 -0.02 1.49 16 40 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.04 0.86 6.37 -2.39 -0.02 0.85 16 43 H 0.39 5.93 9.12 -74.06 -0.68 5.26 16 44 H 0.34 12.78 6.14 -89.70 -0.55 12.23 16 45 H 0.10 3.84 6.14 -2.39 -0.01 3.82 16 46 H 0.04 1.76 6.42 -2.38 -0.02 1.75 16 47 H 0.39 21.95 7.90 -92.70 -0.73 21.22 16 48 H 0.28 14.97 8.31 -92.71 -0.77 14.20 16 49 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.06 1.98 5.22 -2.39 -0.01 1.97 16 Total: -1.00 -90.77 390.83 -1.23 -92.01 By element: Atomic # 1 Polarization: 51.41 SS G_CDS: -0.95 Total: 50.46 kcal Atomic # 6 Polarization: 22.08 SS G_CDS: 6.63 Total: 28.71 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -5.94 Total: -128.73 kcal Atomic # 8 Polarization: -87.20 SS G_CDS: -3.00 Total: -90.21 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -90.77 -1.23 -92.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570279433.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.312 kcal (2) G-P(sol) polarization free energy of solvation -90.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds