Wall clock time and date at job start Wed Apr 1 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00049 * 2 1 4 4 C 1.52999 * 109.47044 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47036 * 65.00432 * 4 3 2 6 6 C 1.46768 * 124.35056 * 89.99767 * 5 4 3 7 7 C 1.54487 * 105.47348 * 197.03922 * 6 5 4 8 8 H 1.09002 * 110.96610 * 92.73899 * 7 6 5 9 9 C 1.50697 * 110.96815 * 216.46716 * 7 6 5 10 10 O 1.21279 * 120.00214 * 359.97438 * 9 7 6 11 11 N 1.34780 * 119.99919 * 179.97438 * 9 7 6 12 12 C 1.46503 * 119.99957 * 0.02562 * 11 9 7 13 13 C 1.46498 * 119.99848 * 179.97438 * 11 9 7 14 14 C 1.52997 * 109.47113 * 269.99994 * 13 11 9 15 15 H 1.09001 * 109.47375 * 305.00376 * 14 13 11 16 16 O 1.42895 * 109.47356 * 65.00278 * 14 13 11 17 17 C 1.53006 * 109.47164 * 185.00342 * 14 13 11 18 18 N 1.46500 * 109.47249 * 180.02562 * 17 14 13 19 19 C 1.36935 * 120.00177 * 180.02562 * 18 17 14 20 20 H 1.08005 * 119.99498 * 359.97438 * 19 18 17 21 21 C 1.38809 * 120.00080 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00331 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99689 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47133 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46945 * 120.00061 * 23 21 19 26 26 H 1.48503 * 109.46551 * 239.99273 * 23 21 19 27 27 C 1.54630 * 101.76246 * 334.58307 * 7 6 5 28 28 C 1.34422 * 124.35051 * 270.02217 * 5 4 3 29 29 O 1.21281 * 124.94187 * 359.60853 * 28 5 4 30 30 H 1.08997 * 109.47257 * 300.00441 * 1 2 3 31 31 H 1.09004 * 109.46769 * 59.99697 * 1 2 3 32 32 H 1.09001 * 109.47221 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47154 * 59.99922 * 3 2 1 34 34 H 1.08996 * 109.47568 * 300.00071 * 3 2 1 35 35 H 1.09003 * 109.47761 * 305.00393 * 4 3 2 36 36 H 1.08997 * 109.47328 * 184.99971 * 4 3 2 37 37 H 1.08996 * 110.24449 * 78.03656 * 6 5 4 38 38 H 1.08995 * 110.24620 * 316.03557 * 6 5 4 39 39 H 1.09002 * 109.46673 * 269.99956 * 12 11 9 40 40 H 1.09002 * 109.47348 * 29.99621 * 12 11 9 41 41 H 1.08997 * 109.47293 * 149.99917 * 12 11 9 42 42 H 1.08998 * 109.46647 * 150.00322 * 13 11 9 43 43 H 1.09002 * 109.47421 * 30.00295 * 13 11 9 44 44 H 0.96705 * 114.00010 * 59.99704 * 16 14 13 45 45 H 1.09001 * 109.46998 * 299.99705 * 17 14 13 46 46 H 1.09000 * 109.47050 * 59.99996 * 17 14 13 47 47 H 0.97003 * 119.99831 * 359.97438 * 18 17 14 48 48 H 0.96998 * 120.00344 * 180.02562 * 22 21 19 49 49 H 1.08999 * 110.48256 * 143.47324 * 27 7 6 50 50 H 1.08998 * 110.48519 * 266.11939 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.3130 1.3079 -2.4706 7 6 4.2889 0.2644 -3.6096 8 1 3.3083 0.2276 -4.0841 9 6 5.3658 0.5491 -4.6245 10 8 6.1041 1.4996 -4.4750 11 7 5.5086 -0.2527 -5.6984 12 6 4.6165 -1.4006 -5.8793 13 6 6.5552 0.0244 -6.6854 14 6 6.0010 0.9500 -7.7702 15 1 5.1030 0.5076 -8.2015 16 8 5.6784 2.2179 -7.1954 17 6 7.0527 1.1393 -8.8653 18 7 6.5223 2.0262 -9.9037 19 6 7.2905 2.3421 -10.9924 20 1 8.2877 1.9376 -11.0851 21 6 6.7881 3.1828 -11.9760 22 7 5.5732 3.6760 -11.8627 23 14 7.8366 3.6142 -13.4607 24 1 9.1532 2.9365 -13.3506 25 1 7.1502 3.1652 -14.6986 26 1 8.0397 5.0843 -13.5128 27 6 4.5833 -1.0458 -2.8430 28 6 4.1251 -0.7600 -1.4299 29 8 3.9205 -1.6028 -0.5821 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8509 0.5684 0.8426 36 1 3.9785 2.1764 0.0902 37 1 5.3065 1.7473 -2.3825 38 1 3.5712 2.0848 -2.6551 39 1 5.0490 -2.2765 -5.3958 40 1 3.6466 -1.1810 -5.4329 41 1 4.4901 -1.5984 -6.9437 42 1 6.8836 -0.9108 -7.1388 43 1 7.4002 0.5062 -6.1935 44 1 6.4321 2.6701 -6.7920 45 1 7.9507 1.5818 -8.4340 46 1 7.2987 0.1722 -9.3038 47 1 5.6265 2.3891 -9.8205 48 1 5.2220 4.2632 -12.5502 49 1 4.0147 -1.8727 -3.2685 50 1 5.6506 -1.2665 -2.8606 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571582080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:55 Heat of formation + Delta-G solvation = -138.512298 kcal Electronic energy + Delta-G solvation = -30832.921757 eV Core-core repulsion = 26475.382671 eV Total energy + Delta-G solvation = -4357.539087 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.16268 -39.66377 -38.11076 -37.41937 -36.32293 -35.41988 -34.00019 -33.63532 -31.31516 -30.08488 -29.08959 -28.00107 -27.01316 -26.67458 -25.64247 -23.83396 -23.00656 -22.17320 -21.11642 -19.81587 -19.23173 -17.79945 -17.32084 -17.15378 -16.91154 -16.64864 -16.18043 -15.96226 -15.65357 -15.54837 -15.10375 -14.91901 -14.67097 -14.43809 -14.11825 -13.93419 -13.62595 -13.42186 -13.31532 -13.08676 -12.98785 -12.88224 -12.65470 -12.43998 -12.31451 -12.17074 -12.12346 -11.81371 -11.62641 -11.51859 -11.48664 -10.93422 -10.83789 -10.66963 -10.23991 -10.12309 -10.04023 -9.85256 -9.76396 -9.59592 -8.98272 -8.90259 -8.57651 -6.91833 -5.75064 -3.04436 2.36867 2.46602 2.60379 2.86971 3.42234 3.43230 3.48463 3.51057 3.89333 4.02031 4.30321 4.56001 4.56961 4.61707 4.67612 4.72720 4.85415 4.87384 4.91974 4.95658 4.99397 5.00669 5.03875 5.17124 5.18544 5.24760 5.31635 5.33932 5.35070 5.42309 5.51631 5.53750 5.60748 5.64488 5.71713 5.99242 6.19717 6.22539 6.37568 6.51702 6.72988 6.77857 6.86535 7.20989 7.69240 7.96642 8.03111 8.19089 8.43365 9.54732 10.12927 10.48576 11.47354 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.001926 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.196001 B =14532.868890 C =14930.267416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.377 6.377 3 C 0.040 3.960 4 C 0.129 3.871 5 N -0.618 5.618 6 C 0.117 3.883 7 C -0.121 4.121 8 H 0.116 0.884 9 C 0.532 3.468 10 O -0.527 6.527 11 N -0.605 5.605 12 C 0.073 3.927 13 C 0.085 3.915 14 C 0.086 3.914 15 H 0.095 0.905 16 O -0.547 6.547 17 C 0.125 3.875 18 N -0.725 5.725 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C -0.143 4.143 28 C 0.525 3.475 29 O -0.518 6.518 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.374 0.626 45 H 0.020 0.980 46 H 0.024 0.976 47 H 0.389 0.611 48 H 0.254 0.746 49 H 0.109 0.891 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 -9.528 24.699 27.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C -0.038 4.038 4 C 0.007 3.993 5 N -0.353 5.353 6 C -0.006 4.006 7 C -0.143 4.143 8 H 0.134 0.866 9 C 0.319 3.681 10 O -0.403 6.403 11 N -0.338 5.338 12 C -0.070 4.070 13 C -0.039 4.039 14 C 0.026 3.974 15 H 0.112 0.888 16 O -0.352 6.352 17 C -0.004 4.004 18 N -0.370 5.370 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.578 5.578 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C -0.184 4.184 28 C 0.312 3.688 29 O -0.393 6.393 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.222 0.778 45 H 0.038 0.962 46 H 0.042 0.958 47 H 0.223 0.777 48 H 0.064 0.936 49 H 0.127 0.873 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.629 -9.762 24.972 27.876 hybrid contribution 0.409 0.757 -0.924 1.263 sum -7.221 -9.004 24.047 26.674 Atomic orbital electron populations 1.22735 0.81296 1.02779 0.99703 1.88054 1.19323 1.26824 1.95302 1.23026 0.94438 0.85714 1.00634 1.21416 0.92128 0.99440 0.86330 1.48195 1.67203 1.07292 1.12616 1.21987 1.03179 0.93719 0.81680 1.22190 1.00393 0.96372 0.95336 0.86621 1.19889 0.84577 0.82161 0.81516 1.90686 1.45253 1.28371 1.75953 1.47638 1.34385 1.28552 1.23210 1.21925 0.93745 0.88043 1.03311 1.22303 0.90510 1.00894 0.90145 1.22476 0.99136 0.84390 0.91438 0.88752 1.86540 1.38975 1.32339 1.77306 1.21236 0.94511 0.94704 0.89910 1.42244 1.17802 1.55847 1.21096 1.19268 0.97147 1.23322 0.97563 0.91217 1.24766 0.96774 1.00332 0.99130 1.69690 1.15784 1.36988 1.35328 0.86114 0.79304 0.77870 0.82871 1.20576 1.21872 1.21848 1.22371 1.04536 0.97816 0.93632 1.20619 0.76368 0.82218 0.89588 1.90736 1.50697 1.49164 1.48679 0.94236 0.94235 0.89671 0.92275 0.92949 0.89045 0.88515 0.88818 0.89890 0.92246 0.90974 0.90473 0.89531 0.89352 0.77848 0.96179 0.95817 0.77675 0.93559 0.87283 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.81 10.26 -35.23 -0.36 -4.17 16 3 C 0.04 0.29 6.28 37.16 0.23 0.52 16 4 C 0.13 0.95 6.33 -4.04 -0.03 0.93 16 5 N -0.62 -5.59 2.90 -172.41 -0.50 -6.09 16 6 C 0.12 0.98 6.71 -3.12 -0.02 0.95 16 7 C -0.12 -1.00 2.55 -90.14 -0.23 -1.23 16 8 H 0.12 0.81 7.25 -51.93 -0.38 0.44 16 9 C 0.53 5.92 6.58 -10.99 -0.07 5.85 16 10 O -0.53 -7.53 14.06 -2.15 -0.03 -7.56 16 11 N -0.61 -6.19 2.86 -181.57 -0.52 -6.70 16 12 C 0.07 0.50 9.19 59.85 0.55 1.05 16 13 C 0.08 1.00 5.11 -4.04 -0.02 0.98 16 14 C 0.09 1.36 3.30 -26.73 -0.09 1.27 16 15 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 16 O -0.55 -9.79 11.95 -42.94 -0.51 -10.30 16 17 C 0.13 2.43 5.92 -4.04 -0.02 2.40 16 18 N -0.73 -18.56 5.49 -59.90 -0.33 -18.89 16 19 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 23 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C -0.14 -1.15 5.47 -26.74 -0.15 -1.29 16 28 C 0.52 5.78 7.72 -10.86 -0.08 5.69 16 29 O -0.52 -7.67 17.49 5.56 0.10 -7.58 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.78 7.92 -51.93 -0.41 0.37 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.89 6.96 -51.93 -0.36 0.52 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 40 H 0.07 0.41 6.12 -51.93 -0.32 0.09 16 41 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 42 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 43 H 0.09 1.11 7.42 -51.93 -0.39 0.73 16 44 H 0.37 6.27 8.75 45.56 0.40 6.67 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.39 10.77 7.54 -40.82 -0.31 10.46 16 48 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.11 0.70 7.56 -51.93 -0.39 0.31 16 50 H 0.11 0.84 7.89 -51.93 -0.41 0.43 16 LS Contribution 409.86 15.07 6.18 6.18 Total: -1.00 -37.60 409.86 -6.94 -44.54 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.60 Total: 9.97 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 0.94 Total: 10.98 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.62 Total: -59.57 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.81 Total: -29.61 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -37.60 -6.94 -44.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571582080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.975 kcal (2) G-P(sol) polarization free energy of solvation -37.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds