Wall clock time and date at job start Wed Apr 1 2020 02:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00049 * 2 1 4 4 C 1.52999 * 109.47044 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47036 * 65.00432 * 4 3 2 6 6 C 1.46768 * 124.35056 * 89.99767 * 5 4 3 7 7 C 1.54487 * 105.47348 * 197.03922 * 6 5 4 8 8 H 1.09002 * 110.96610 * 92.73899 * 7 6 5 9 9 C 1.50697 * 110.96815 * 216.46716 * 7 6 5 10 10 O 1.21279 * 120.00214 * 359.97438 * 9 7 6 11 11 N 1.34780 * 119.99919 * 179.97438 * 9 7 6 12 12 C 1.46503 * 119.99957 * 0.02562 * 11 9 7 13 13 C 1.46498 * 119.99848 * 179.97438 * 11 9 7 14 14 C 1.52997 * 109.47113 * 269.99994 * 13 11 9 15 15 H 1.09001 * 109.47375 * 305.00376 * 14 13 11 16 16 O 1.42895 * 109.47356 * 65.00278 * 14 13 11 17 17 C 1.53006 * 109.47164 * 185.00342 * 14 13 11 18 18 N 1.46500 * 109.47249 * 180.02562 * 17 14 13 19 19 C 1.36935 * 120.00177 * 180.02562 * 18 17 14 20 20 H 1.08005 * 119.99498 * 359.97438 * 19 18 17 21 21 C 1.38809 * 120.00080 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00331 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99689 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47133 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46945 * 120.00061 * 23 21 19 26 26 H 1.48503 * 109.46551 * 239.99273 * 23 21 19 27 27 C 1.54630 * 101.76246 * 334.58307 * 7 6 5 28 28 C 1.34422 * 124.35051 * 270.02217 * 5 4 3 29 29 O 1.21281 * 124.94187 * 359.60853 * 28 5 4 30 30 H 1.08997 * 109.47257 * 300.00441 * 1 2 3 31 31 H 1.09004 * 109.46769 * 59.99697 * 1 2 3 32 32 H 1.09001 * 109.47221 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47154 * 59.99922 * 3 2 1 34 34 H 1.08996 * 109.47568 * 300.00071 * 3 2 1 35 35 H 1.09003 * 109.47761 * 305.00393 * 4 3 2 36 36 H 1.08997 * 109.47328 * 184.99971 * 4 3 2 37 37 H 1.08996 * 110.24449 * 78.03656 * 6 5 4 38 38 H 1.08995 * 110.24620 * 316.03557 * 6 5 4 39 39 H 1.09002 * 109.46673 * 269.99956 * 12 11 9 40 40 H 1.09002 * 109.47348 * 29.99621 * 12 11 9 41 41 H 1.08997 * 109.47293 * 149.99917 * 12 11 9 42 42 H 1.08998 * 109.46647 * 150.00322 * 13 11 9 43 43 H 1.09002 * 109.47421 * 30.00295 * 13 11 9 44 44 H 0.96705 * 114.00010 * 59.99704 * 16 14 13 45 45 H 1.09001 * 109.46998 * 299.99705 * 17 14 13 46 46 H 1.09000 * 109.47050 * 59.99996 * 17 14 13 47 47 H 0.97003 * 119.99831 * 359.97438 * 18 17 14 48 48 H 0.96998 * 120.00344 * 180.02562 * 22 21 19 49 49 H 1.08999 * 110.48256 * 143.47324 * 27 7 6 50 50 H 1.08998 * 110.48519 * 266.11939 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.3130 1.3079 -2.4706 7 6 4.2889 0.2644 -3.6096 8 1 3.3083 0.2276 -4.0841 9 6 5.3658 0.5491 -4.6245 10 8 6.1041 1.4996 -4.4750 11 7 5.5086 -0.2527 -5.6984 12 6 4.6165 -1.4006 -5.8793 13 6 6.5552 0.0244 -6.6854 14 6 6.0010 0.9500 -7.7702 15 1 5.1030 0.5076 -8.2015 16 8 5.6784 2.2179 -7.1954 17 6 7.0527 1.1393 -8.8653 18 7 6.5223 2.0262 -9.9037 19 6 7.2905 2.3421 -10.9924 20 1 8.2877 1.9376 -11.0851 21 6 6.7881 3.1828 -11.9760 22 7 5.5732 3.6760 -11.8627 23 14 7.8366 3.6142 -13.4607 24 1 9.1532 2.9365 -13.3506 25 1 7.1502 3.1652 -14.6986 26 1 8.0397 5.0843 -13.5128 27 6 4.5833 -1.0458 -2.8430 28 6 4.1251 -0.7600 -1.4299 29 8 3.9205 -1.6028 -0.5821 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8509 0.5684 0.8426 36 1 3.9785 2.1764 0.0902 37 1 5.3065 1.7473 -2.3825 38 1 3.5712 2.0848 -2.6551 39 1 5.0490 -2.2765 -5.3958 40 1 3.6466 -1.1810 -5.4329 41 1 4.4901 -1.5984 -6.9437 42 1 6.8836 -0.9108 -7.1388 43 1 7.4002 0.5062 -6.1935 44 1 6.4321 2.6701 -6.7920 45 1 7.9507 1.5818 -8.4340 46 1 7.2987 0.1722 -9.3038 47 1 5.6265 2.3891 -9.8205 48 1 5.2220 4.2632 -12.5502 49 1 4.0147 -1.8727 -3.2685 50 1 5.6506 -1.2665 -2.8606 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571582080.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:54 Heat of formation + Delta-G solvation = -168.592819 kcal Electronic energy + Delta-G solvation = -30834.226147 eV Core-core repulsion = 26475.382671 eV Total energy + Delta-G solvation = -4358.843476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.93931 -40.53901 -38.78288 -38.65469 -37.21194 -36.41078 -35.82546 -34.33153 -33.16636 -31.15644 -30.06093 -28.72505 -27.93055 -27.26650 -26.88021 -25.09634 -23.99032 -23.25392 -22.46201 -20.56086 -20.03979 -19.22208 -18.56163 -18.03260 -17.75725 -17.54143 -17.14592 -16.69471 -16.46451 -16.42497 -16.35083 -16.14680 -15.96188 -15.45268 -15.33671 -14.94765 -14.66976 -14.58031 -14.24259 -13.99849 -13.97032 -13.73011 -13.61877 -13.60860 -13.18451 -12.98385 -12.91634 -12.79799 -12.73008 -12.57581 -12.43683 -12.29763 -12.11782 -12.08336 -11.96148 -11.79426 -11.17315 -11.01579 -10.96569 -10.65316 -10.57991 -9.71992 -9.50725 -8.99827 -7.94280 -5.23709 1.47135 1.48506 1.56135 1.58526 1.63598 1.87451 2.12442 2.56062 2.89844 3.16802 3.34007 3.37944 3.54319 3.65899 3.83740 3.91238 4.04312 4.07265 4.14012 4.16149 4.26713 4.36808 4.38561 4.43540 4.49097 4.52331 4.54496 4.57170 4.58371 4.63473 4.71304 4.76075 4.83175 4.84159 4.85960 4.94563 4.95296 5.03601 5.28715 5.47216 5.51962 5.53495 6.10016 6.26966 6.27377 6.41677 6.86429 7.16743 7.20908 7.33462 8.10734 8.32881 9.29306 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.001926 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.196001 B =14532.868890 C =14930.267416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.411 6.411 3 C 0.039 3.961 4 C 0.122 3.878 5 N -0.614 5.614 6 C 0.119 3.881 7 C -0.110 4.110 8 H 0.135 0.865 9 C 0.527 3.473 10 O -0.564 6.564 11 N -0.605 5.605 12 C 0.064 3.936 13 C 0.096 3.904 14 C 0.097 3.903 15 H 0.090 0.910 16 O -0.564 6.564 17 C 0.122 3.878 18 N -0.741 5.741 19 C -0.245 4.245 20 H 0.078 0.922 21 C -0.079 4.079 22 N -0.970 5.970 23 Si 0.976 3.024 24 H -0.264 1.264 25 H -0.292 1.292 26 H -0.295 1.295 27 C -0.132 4.132 28 C 0.516 3.484 29 O -0.564 6.564 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.376 0.624 45 H 0.023 0.977 46 H 0.039 0.961 47 H 0.374 0.626 48 H 0.251 0.749 49 H 0.130 0.870 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 -10.382 24.770 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.038 4.038 4 C 0.000 4.000 5 N -0.348 5.348 6 C -0.004 4.004 7 C -0.132 4.132 8 H 0.152 0.848 9 C 0.315 3.685 10 O -0.442 6.442 11 N -0.336 5.336 12 C -0.078 4.078 13 C -0.028 4.028 14 C 0.036 3.964 15 H 0.108 0.892 16 O -0.370 6.370 17 C -0.006 4.006 18 N -0.384 5.384 19 C -0.377 4.377 20 H 0.096 0.904 21 C -0.271 4.271 22 N -0.621 5.621 23 Si 0.805 3.195 24 H -0.188 1.188 25 H -0.219 1.219 26 H -0.222 1.222 27 C -0.172 4.172 28 C 0.304 3.696 29 O -0.443 6.443 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.142 0.858 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.132 0.868 43 H 0.099 0.901 44 H 0.224 0.776 45 H 0.041 0.959 46 H 0.057 0.943 47 H 0.206 0.794 48 H 0.059 0.941 49 H 0.148 0.852 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.475 -10.646 25.060 28.235 hybrid contribution 0.376 1.011 -0.877 1.390 sum -7.099 -9.635 24.183 26.982 Atomic orbital electron populations 1.22837 0.80082 1.03140 1.00710 1.88015 1.20876 1.28569 1.95550 1.23127 0.93836 0.84971 1.01910 1.21629 0.92839 1.00352 0.85153 1.48325 1.66165 1.06976 1.13299 1.21990 1.03003 0.93966 0.81394 1.22133 1.00148 0.96337 0.94569 0.84756 1.20346 0.84575 0.81596 0.81984 1.90674 1.46669 1.29999 1.76889 1.47719 1.34360 1.29171 1.22336 1.22213 0.94028 0.87500 1.04060 1.22060 0.90457 1.00975 0.89296 1.22407 0.97934 0.84469 0.91574 0.89231 1.86514 1.39497 1.33592 1.77406 1.21465 0.95524 0.93926 0.89649 1.42462 1.17114 1.56772 1.22009 1.19708 0.97502 1.22373 0.98107 0.90426 1.25629 0.98120 1.01049 1.02349 1.69852 1.17669 1.38200 1.36330 0.85040 0.78281 0.77154 0.79068 1.18827 1.21933 1.22242 1.22344 1.04908 0.98278 0.91710 1.21108 0.75811 0.82400 0.90276 1.90709 1.52936 1.50391 1.50251 0.92928 0.93458 0.89751 0.90335 0.92185 0.90675 0.85773 0.89968 0.88475 0.89990 0.89438 0.90214 0.86847 0.90141 0.77585 0.95947 0.94282 0.79364 0.94067 0.85192 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -8.05 10.26 -148.98 -1.53 -9.58 16 3 C 0.04 0.51 6.28 71.98 0.45 0.96 16 4 C 0.12 1.69 6.33 86.38 0.55 2.24 16 5 N -0.61 -10.50 2.90 -817.98 -2.37 -12.87 16 6 C 0.12 1.81 6.71 86.83 0.58 2.39 16 7 C -0.11 -1.59 2.55 -10.48 -0.03 -1.61 16 8 H 0.13 1.47 7.25 -2.39 -0.02 1.46 16 9 C 0.53 10.84 6.58 87.66 0.58 11.42 16 10 O -0.56 -15.72 14.06 4.35 0.06 -15.66 16 11 N -0.60 -10.92 2.86 -846.76 -2.42 -13.34 16 12 C 0.06 0.67 9.19 127.77 1.17 1.84 16 13 C 0.10 2.07 5.11 86.38 0.44 2.51 16 14 C 0.10 2.93 3.30 30.60 0.10 3.03 16 15 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 16 O -0.56 -20.08 11.95 -141.61 -1.69 -21.77 16 17 C 0.12 4.59 5.92 86.38 0.51 5.10 16 18 N -0.74 -37.89 5.49 -343.44 -1.89 -39.78 16 19 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 20 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 21 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 22 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 23 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 27 C -0.13 -1.85 5.47 30.59 0.17 -1.69 16 28 C 0.52 10.97 7.72 87.90 0.68 11.65 16 29 O -0.56 -16.86 17.49 -3.03 -0.05 -16.91 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 1.30 7.92 -2.39 -0.02 1.29 16 36 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.49 6.96 -2.39 -0.02 1.48 16 38 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 0.54 8.13 -2.39 -0.02 0.52 16 40 H 0.09 0.67 6.12 -2.39 -0.01 0.66 16 41 H 0.08 0.84 8.07 -2.39 -0.02 0.82 16 42 H 0.11 1.85 8.07 -2.39 -0.02 1.83 16 43 H 0.08 1.91 7.42 -2.39 -0.02 1.89 16 44 H 0.38 12.72 8.75 -74.05 -0.65 12.07 16 45 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.37 21.03 7.54 -92.71 -0.70 20.33 16 48 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 49 H 0.13 1.28 7.56 -2.39 -0.02 1.26 16 50 H 0.11 1.52 7.89 -2.39 -0.02 1.50 16 Total: -1.00 -82.54 409.86 -0.21 -82.76 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -0.39 Total: 36.60 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: 7.76 Total: 22.40 kcal Atomic # 7 Polarization: -119.83 SS G_CDS: -6.39 Total: -126.23 kcal Atomic # 8 Polarization: -60.70 SS G_CDS: -3.21 Total: -63.92 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -82.54 -0.21 -82.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571582080.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.836 kcal (2) G-P(sol) polarization free energy of solvation -82.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds