Wall clock time and date at job start Wed Apr 1 2020 02:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.53001 * 109.47147 * 89.99619 * 3 2 1 5 5 H 1.08995 * 109.47224 * 305.00087 * 4 3 2 6 6 O 1.42903 * 109.46974 * 65.00021 * 4 3 2 7 7 C 1.52997 * 109.47345 * 185.00048 * 4 3 2 8 8 N 1.46894 * 109.47537 * 180.02562 * 7 4 3 9 9 C 1.46897 * 111.00408 * 179.97438 * 8 7 4 10 10 C 1.50694 * 109.47518 * 180.02562 * 9 8 7 11 11 O 1.21296 * 119.99872 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00154 * 180.02562 * 10 9 8 13 13 C 1.37104 * 120.00100 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99865 * 359.97438 * 13 12 10 15 15 C 1.38951 * 120.00070 * 179.97438 * 13 12 10 16 16 N 1.31406 * 120.00000 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99717 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47207 * 60.00180 * 17 15 13 19 19 H 1.48498 * 109.46924 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47281 * 300.00091 * 17 15 13 21 21 C 1.34773 * 119.99969 * 179.71965 * 2 1 3 22 22 O 1.21283 * 120.00092 * 180.02562 * 21 2 1 23 23 C 1.50702 * 120.00430 * 0.02562 * 21 2 1 24 24 C 1.52991 * 109.47286 * 179.97438 * 23 21 2 25 25 H 1.08998 * 110.46100 * 54.29871 * 24 23 21 26 26 C 1.54517 * 110.51052 * 176.90044 * 24 23 21 27 27 C 1.54478 * 104.06046 * 118.64283 * 26 24 23 28 28 O 1.44429 * 104.80401 * 23.98162 * 27 26 24 29 29 C 1.44643 * 105.36870 * 319.56316 * 28 27 26 30 30 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 31 31 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 32 32 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 33 33 H 1.08994 * 109.47173 * 210.00167 * 3 2 1 34 34 H 1.09005 * 109.47077 * 330.00338 * 3 2 1 35 35 H 0.96700 * 114.00009 * 60.00343 * 6 4 3 36 36 H 1.09000 * 109.46894 * 300.00653 * 7 4 3 37 37 H 1.09003 * 109.47240 * 59.99952 * 7 4 3 38 38 H 1.00906 * 110.99828 * 56.04802 * 8 7 4 39 39 H 1.09001 * 109.47211 * 300.00523 * 9 8 7 40 40 H 1.09002 * 109.47394 * 60.00105 * 9 8 7 41 41 H 0.96998 * 120.00279 * 359.97438 * 12 10 9 42 42 H 0.96996 * 119.99925 * 180.02562 * 16 15 13 43 43 H 1.09009 * 109.46564 * 299.99895 * 23 21 2 44 44 H 1.09001 * 109.47030 * 59.99569 * 23 21 2 45 45 H 1.08996 * 110.51156 * 237.29293 * 26 24 23 46 46 H 1.08995 * 110.51078 * 359.86694 * 26 24 23 47 47 H 1.09005 * 110.36840 * 142.80921 * 27 26 24 48 48 H 1.08999 * 110.37470 * 265.03939 * 27 26 24 49 49 H 1.08998 * 110.34127 * 281.59432 * 29 28 27 50 50 H 1.09000 * 110.50714 * 159.18336 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 1 1.5061 1.7550 1.9815 6 8 3.3209 0.7725 2.0814 7 6 3.1060 3.0938 1.4444 8 7 3.3513 3.5177 2.8293 9 6 3.9801 4.8447 2.8702 10 6 4.2164 5.2446 4.3038 11 8 3.8923 4.4979 5.2030 12 7 4.7868 6.4325 4.5867 13 6 5.0022 6.7962 5.8910 14 1 4.7145 6.1309 6.6916 15 6 5.5908 8.0206 6.1827 16 7 5.9414 8.8298 5.2085 17 14 5.8837 8.5163 7.9598 18 1 6.7779 7.5246 8.6094 19 1 6.5187 9.8580 8.0011 20 1 4.5866 8.5607 8.6815 21 6 2.1389 -1.1672 0.0057 22 8 3.3517 -1.1672 0.0062 23 6 1.3855 -2.4723 0.0115 24 6 2.3797 -3.6351 0.0167 25 1 3.0803 -3.5337 0.8455 26 6 1.6332 -4.9854 0.1009 27 6 2.0261 -5.7134 -1.2036 28 8 3.2834 -5.1193 -1.5936 29 6 3.1380 -3.7050 -1.3274 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 3.1499 1.1384 -0.5138 34 1 1.6084 2.0284 -0.5138 35 1 4.1836 0.6812 1.6544 36 1 4.0523 3.0493 0.9053 37 1 2.4436 3.8093 0.9570 38 1 3.9106 2.8375 3.3219 39 1 4.9323 4.8120 2.3408 40 1 3.3239 5.5726 2.3930 41 1 5.0456 7.0299 3.8677 42 1 6.3526 9.6844 5.4122 43 1 0.7585 -2.5259 0.9016 44 1 0.7591 -2.5342 -0.8784 45 1 1.9664 -5.5524 0.9701 46 1 0.5560 -4.8243 0.1413 47 1 2.1515 -6.7805 -1.0196 48 1 1.2715 -5.5479 -1.9726 49 1 2.5560 -3.2288 -2.1165 50 1 4.1153 -3.2310 -1.2368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571589468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:50 Heat of formation + Delta-G solvation = -167.499355 kcal Electronic energy + Delta-G solvation = -29837.036140 eV Core-core repulsion = 25478.240081 eV Total energy + Delta-G solvation = -4358.796060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.66219 -39.42175 -38.39274 -37.64245 -35.65622 -34.66238 -33.91448 -33.74539 -31.23930 -30.90755 -30.03960 -28.05428 -27.46561 -26.34675 -24.75488 -23.45151 -23.06313 -21.71017 -20.91053 -19.51659 -19.23501 -17.88612 -17.63091 -17.16031 -16.58714 -16.51274 -16.27784 -15.90038 -15.64679 -15.56474 -15.31891 -14.88045 -14.53374 -14.44061 -14.04930 -13.85747 -13.66386 -13.44775 -13.36048 -13.15551 -12.95452 -12.80362 -12.53720 -12.52284 -12.08174 -11.94464 -11.73703 -11.62558 -11.55568 -11.49794 -11.28419 -11.12252 -11.01205 -10.98938 -10.42893 -10.39037 -10.19701 -10.14517 -9.98761 -9.48319 -8.89716 -8.42859 -8.04898 -7.94132 -6.40069 -3.80834 2.35351 2.61043 3.21710 3.26986 3.31765 3.61814 3.92517 3.95915 4.05344 4.23078 4.28490 4.36748 4.42666 4.47889 4.63077 4.68076 4.82271 4.85271 4.90900 4.93234 5.01122 5.04644 5.05618 5.09193 5.17805 5.23750 5.26272 5.27881 5.31771 5.39884 5.41501 5.51456 5.59701 5.64489 5.78275 5.84413 5.96440 6.00046 6.08778 6.27817 6.43494 7.01517 7.20422 7.56714 7.64949 7.73338 7.89705 8.08044 8.63321 9.19638 9.56008 10.07929 10.77668 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.027237 B = 0.001558 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.783656 B =17967.721928 C =18306.368746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.613 5.613 3 C 0.083 3.917 4 C 0.095 3.905 5 H 0.105 0.895 6 O -0.548 6.548 7 C 0.029 3.971 8 N -0.664 5.664 9 C 0.050 3.950 10 C 0.440 3.560 11 O -0.581 6.581 12 N -0.564 5.564 13 C -0.300 4.300 14 H 0.102 0.898 15 C 0.022 3.978 16 N -0.903 5.903 17 Si 0.931 3.069 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.274 1.274 21 C 0.518 3.482 22 O -0.531 6.531 23 C -0.131 4.131 24 C -0.106 4.106 25 H 0.095 0.905 26 C -0.153 4.153 27 C 0.043 3.957 28 O -0.379 6.379 29 C 0.056 3.944 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.374 0.626 36 H 0.030 0.970 37 H 0.078 0.922 38 H 0.357 0.643 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.057 0.943 49 H 0.054 0.946 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.655 -22.208 -18.560 31.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.346 5.346 3 C -0.040 4.040 4 C 0.034 3.966 5 H 0.123 0.877 6 O -0.353 6.353 7 C -0.101 4.101 8 N -0.297 5.297 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.465 6.465 12 N -0.201 5.201 13 C -0.430 4.430 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C 0.307 3.693 22 O -0.407 6.407 23 C -0.171 4.171 24 C -0.125 4.125 25 H 0.113 0.887 26 C -0.191 4.191 27 C -0.034 4.034 28 O -0.297 6.297 29 C -0.021 4.021 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.221 0.779 36 H 0.048 0.952 37 H 0.097 0.903 38 H 0.177 0.823 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.110 0.890 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.108 0.892 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.091 -22.444 -17.541 31.350 hybrid contribution 1.227 0.980 -0.206 1.584 sum -11.864 -21.464 -17.747 30.272 Atomic orbital electron populations 1.21850 0.79360 1.03754 1.01807 1.47705 1.06908 1.05898 1.74103 1.22216 0.98573 0.85233 0.97996 1.22348 0.94906 0.87126 0.92185 0.87680 1.86618 1.29299 1.62728 1.56613 1.22579 0.99492 0.96734 0.91341 1.59997 1.53946 1.03797 1.12000 1.21682 0.97639 0.92080 0.96829 1.19806 0.84089 0.83775 0.89744 1.90535 1.55513 1.52843 1.47630 1.41853 1.53512 1.15930 1.08796 1.19669 1.37219 1.02020 0.84058 0.87971 1.25255 0.97061 0.95835 0.99764 1.69602 1.42043 1.10725 1.32033 0.85908 0.78759 0.77506 0.81985 1.19918 1.20986 1.19899 1.20549 0.88108 0.85136 0.75540 1.90666 1.13864 1.87196 1.48993 1.21792 0.98967 0.91949 1.04375 1.22307 0.97033 0.92904 1.00300 0.88707 1.23034 1.00953 0.95863 0.99215 1.23395 0.86604 0.98515 0.94841 1.89177 1.34185 1.20289 1.86088 1.23533 1.02006 0.82211 0.94337 0.92459 0.90889 0.90607 0.89450 0.89554 0.77862 0.95236 0.90333 0.82267 0.93986 0.89713 0.77485 0.91850 0.88372 0.88956 0.90284 0.90301 0.89184 0.92444 0.92815 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.34 10.25 59.85 0.61 0.95 16 2 N -0.61 -4.72 2.86 -181.57 -0.52 -5.24 16 3 C 0.08 0.68 5.11 -4.04 -0.02 0.66 16 4 C 0.10 1.02 3.48 -26.73 -0.09 0.92 16 5 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 6 O -0.55 -7.17 11.52 -43.40 -0.50 -7.67 16 7 C 0.03 0.34 5.39 -3.83 -0.02 0.32 16 8 N -0.66 -11.06 6.13 -115.07 -0.70 -11.77 16 9 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 10 C 0.44 10.68 7.82 -10.99 -0.09 10.59 16 11 O -0.58 -16.31 15.78 5.54 0.09 -16.23 16 12 N -0.56 -14.56 5.29 -10.96 -0.06 -14.62 16 13 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 14 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 15 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 16 N -0.90 -24.75 13.05 55.50 0.72 -24.03 16 17 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 C 0.52 4.74 7.09 -10.99 -0.08 4.66 16 22 O -0.53 -6.50 13.46 -2.61 -0.04 -6.54 16 23 C -0.13 -0.80 3.46 -27.89 -0.10 -0.89 16 24 C -0.11 -0.80 2.71 -89.05 -0.24 -1.04 16 25 H 0.09 0.89 7.96 -51.93 -0.41 0.48 16 26 C -0.15 -0.85 6.74 -25.16 -0.17 -1.02 16 27 C 0.04 0.28 7.64 37.93 0.29 0.57 16 28 O -0.38 -3.81 11.65 -35.23 -0.41 -4.22 16 29 C 0.06 0.49 6.31 37.93 0.24 0.73 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.24 6.43 -51.93 -0.33 -0.09 16 32 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 33 H 0.09 0.79 7.43 -51.93 -0.39 0.40 16 34 H 0.09 0.52 8.07 -51.93 -0.42 0.10 16 35 H 0.37 4.35 8.74 45.56 0.40 4.75 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.36 6.50 7.82 -39.29 -0.31 6.19 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.10 0.48 7.40 -51.92 -0.38 0.10 16 44 H 0.09 0.38 7.98 -51.93 -0.41 -0.03 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.08 0.29 7.73 -51.93 -0.40 -0.11 16 47 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 49 H 0.05 0.43 7.78 -51.93 -0.40 0.02 16 50 H 0.10 1.04 7.71 -51.93 -0.40 0.64 16 LS Contribution 407.71 15.07 6.14 6.14 Total: -1.00 -35.45 407.71 -7.75 -43.20 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -7.52 Total: 15.49 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 0.07 Total: 9.19 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.56 Total: -55.65 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.86 Total: -34.65 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.45 -7.75 -43.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571589468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.298 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds