Wall clock time and date at job start Wed Apr 1 2020 02:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.53001 * 109.47147 * 89.99619 * 3 2 1 5 5 H 1.08995 * 109.47224 * 305.00087 * 4 3 2 6 6 O 1.42903 * 109.46974 * 65.00021 * 4 3 2 7 7 C 1.52997 * 109.47345 * 185.00048 * 4 3 2 8 8 N 1.46894 * 109.47537 * 180.02562 * 7 4 3 9 9 C 1.46897 * 111.00408 * 179.97438 * 8 7 4 10 10 C 1.50694 * 109.47518 * 180.02562 * 9 8 7 11 11 O 1.21296 * 119.99872 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00154 * 180.02562 * 10 9 8 13 13 C 1.37104 * 120.00100 * 180.02562 * 12 10 9 14 14 H 1.08000 * 119.99865 * 359.97438 * 13 12 10 15 15 C 1.38951 * 120.00070 * 179.97438 * 13 12 10 16 16 N 1.31406 * 120.00000 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99717 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47207 * 60.00180 * 17 15 13 19 19 H 1.48498 * 109.46924 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47281 * 300.00091 * 17 15 13 21 21 C 1.34773 * 119.99969 * 179.71965 * 2 1 3 22 22 O 1.21283 * 120.00092 * 180.02562 * 21 2 1 23 23 C 1.50702 * 120.00430 * 0.02562 * 21 2 1 24 24 C 1.52991 * 109.47286 * 179.97438 * 23 21 2 25 25 H 1.08998 * 110.46100 * 54.29871 * 24 23 21 26 26 C 1.54517 * 110.51052 * 176.90044 * 24 23 21 27 27 C 1.54478 * 104.06046 * 118.64283 * 26 24 23 28 28 O 1.44429 * 104.80401 * 23.98162 * 27 26 24 29 29 C 1.44643 * 105.36870 * 319.56316 * 28 27 26 30 30 H 1.08999 * 109.46892 * 90.00398 * 1 2 3 31 31 H 1.09000 * 109.46803 * 209.99571 * 1 2 3 32 32 H 1.09000 * 109.47214 * 330.00364 * 1 2 3 33 33 H 1.08994 * 109.47173 * 210.00167 * 3 2 1 34 34 H 1.09005 * 109.47077 * 330.00338 * 3 2 1 35 35 H 0.96700 * 114.00009 * 60.00343 * 6 4 3 36 36 H 1.09000 * 109.46894 * 300.00653 * 7 4 3 37 37 H 1.09003 * 109.47240 * 59.99952 * 7 4 3 38 38 H 1.00906 * 110.99828 * 56.04802 * 8 7 4 39 39 H 1.09001 * 109.47211 * 300.00523 * 9 8 7 40 40 H 1.09002 * 109.47394 * 60.00105 * 9 8 7 41 41 H 0.96998 * 120.00279 * 359.97438 * 12 10 9 42 42 H 0.96996 * 119.99925 * 180.02562 * 16 15 13 43 43 H 1.09009 * 109.46564 * 299.99895 * 23 21 2 44 44 H 1.09001 * 109.47030 * 59.99569 * 23 21 2 45 45 H 1.08996 * 110.51156 * 237.29293 * 26 24 23 46 46 H 1.08995 * 110.51078 * 359.86694 * 26 24 23 47 47 H 1.09005 * 110.36840 * 142.80921 * 27 26 24 48 48 H 1.08999 * 110.37470 * 265.03939 * 27 26 24 49 49 H 1.08998 * 110.34127 * 281.59432 * 29 28 27 50 50 H 1.09000 * 110.50714 * 159.18336 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 1 1.5061 1.7550 1.9815 6 8 3.3209 0.7725 2.0814 7 6 3.1060 3.0938 1.4444 8 7 3.3513 3.5177 2.8293 9 6 3.9801 4.8447 2.8702 10 6 4.2164 5.2446 4.3038 11 8 3.8923 4.4979 5.2030 12 7 4.7868 6.4325 4.5867 13 6 5.0022 6.7962 5.8910 14 1 4.7145 6.1309 6.6916 15 6 5.5908 8.0206 6.1827 16 7 5.9414 8.8298 5.2085 17 14 5.8837 8.5163 7.9598 18 1 6.7779 7.5246 8.6094 19 1 6.5187 9.8580 8.0011 20 1 4.5866 8.5607 8.6815 21 6 2.1389 -1.1672 0.0057 22 8 3.3517 -1.1672 0.0062 23 6 1.3855 -2.4723 0.0115 24 6 2.3797 -3.6351 0.0167 25 1 3.0803 -3.5337 0.8455 26 6 1.6332 -4.9854 0.1009 27 6 2.0261 -5.7134 -1.2036 28 8 3.2834 -5.1193 -1.5936 29 6 3.1380 -3.7050 -1.3274 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 3.1499 1.1384 -0.5138 34 1 1.6084 2.0284 -0.5138 35 1 4.1836 0.6812 1.6544 36 1 4.0523 3.0493 0.9053 37 1 2.4436 3.8093 0.9570 38 1 3.9106 2.8375 3.3219 39 1 4.9323 4.8120 2.3408 40 1 3.3239 5.5726 2.3930 41 1 5.0456 7.0299 3.8677 42 1 6.3526 9.6844 5.4122 43 1 0.7585 -2.5259 0.9016 44 1 0.7591 -2.5342 -0.8784 45 1 1.9664 -5.5524 0.9701 46 1 0.5560 -4.8243 0.1413 47 1 2.1515 -6.7805 -1.0196 48 1 1.2715 -5.5479 -1.9726 49 1 2.5560 -3.2288 -2.1165 50 1 4.1153 -3.2310 -1.2368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571589468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:49 Heat of formation + Delta-G solvation = -197.437667 kcal Electronic energy + Delta-G solvation = -29838.334363 eV Core-core repulsion = 25478.240081 eV Total energy + Delta-G solvation = -4360.094282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.29508 -40.24596 -39.99051 -38.69797 -36.45881 -36.09026 -35.53150 -34.51986 -33.28617 -31.76015 -30.65453 -29.10640 -28.01081 -27.44476 -26.19278 -24.57611 -23.72910 -22.62164 -21.48836 -21.10214 -20.11021 -19.92939 -18.34754 -18.09953 -17.53209 -17.31730 -17.12660 -17.02339 -16.66644 -16.45623 -16.18062 -16.15429 -15.90933 -15.78642 -15.33912 -14.98241 -14.56743 -14.42772 -14.31232 -13.95485 -13.80390 -13.71368 -13.47894 -13.22980 -13.15842 -13.11074 -12.97175 -12.76924 -12.60552 -12.47338 -12.44796 -12.12931 -12.12089 -12.05050 -11.83137 -11.52319 -11.52127 -11.26985 -10.76434 -10.68944 -10.36636 -10.03462 -9.51394 -9.34798 -8.47946 -5.97082 1.39094 1.40949 1.52088 1.71433 2.03254 2.05820 2.28671 2.88867 3.06120 3.18949 3.41315 3.48658 3.58606 3.74268 3.86539 3.92748 3.95868 4.12641 4.16003 4.21054 4.30679 4.33390 4.37408 4.39287 4.46681 4.50252 4.53421 4.57417 4.64875 4.71309 4.72501 4.81774 4.86616 4.88688 4.93839 5.01644 5.12174 5.15089 5.25415 5.39178 5.53078 5.86230 5.86888 6.08549 6.34034 6.44764 6.58691 6.78088 7.10925 7.27347 7.54070 8.09991 8.69135 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.027237 B = 0.001558 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.783656 B =17967.721928 C =18306.368746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.614 5.614 3 C 0.090 3.910 4 C 0.100 3.900 5 H 0.095 0.905 6 O -0.569 6.569 7 C 0.032 3.968 8 N -0.681 5.681 9 C 0.065 3.935 10 C 0.435 3.565 11 O -0.625 6.625 12 N -0.572 5.572 13 C -0.338 4.338 14 H 0.077 0.923 15 C -0.011 4.011 16 N -0.919 5.919 17 Si 0.994 3.006 18 H -0.273 1.273 19 H -0.268 1.268 20 H -0.272 1.272 21 C 0.506 3.494 22 O -0.573 6.573 23 C -0.123 4.123 24 C -0.105 4.105 25 H 0.065 0.935 26 C -0.145 4.145 27 C 0.036 3.964 28 O -0.410 6.410 29 C 0.057 3.943 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.377 0.623 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.344 0.656 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.076 0.924 46 H 0.107 0.893 47 H 0.099 0.901 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.617 -22.106 -19.787 33.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.346 5.346 3 C -0.034 4.034 4 C 0.040 3.960 5 H 0.113 0.887 6 O -0.375 6.375 7 C -0.098 4.098 8 N -0.314 5.314 9 C -0.067 4.067 10 C 0.222 3.778 11 O -0.512 6.512 12 N -0.209 5.209 13 C -0.468 4.468 14 H 0.095 0.905 15 C -0.211 4.211 16 N -0.559 5.559 17 Si 0.817 3.183 18 H -0.198 1.198 19 H -0.193 1.193 20 H -0.197 1.197 21 C 0.296 3.704 22 O -0.452 6.452 23 C -0.162 4.162 24 C -0.124 4.124 25 H 0.084 0.916 26 C -0.183 4.183 27 C -0.040 4.040 28 O -0.329 6.329 29 C -0.020 4.020 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.132 0.868 35 H 0.225 0.775 36 H 0.060 0.940 37 H 0.118 0.882 38 H 0.163 0.837 39 H 0.082 0.918 40 H 0.127 0.873 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.134 0.866 44 H 0.139 0.861 45 H 0.095 0.905 46 H 0.125 0.875 47 H 0.117 0.883 48 H 0.093 0.907 49 H 0.083 0.917 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.091 -22.325 -18.813 32.864 hybrid contribution 1.817 0.915 0.138 2.039 sum -13.274 -21.409 -18.675 31.357 Atomic orbital electron populations 1.22109 0.77158 1.04707 1.03424 1.47847 1.08313 1.05252 1.73166 1.22101 0.98955 0.86317 0.96024 1.22355 0.93812 0.86270 0.93601 0.88676 1.86586 1.29853 1.63470 1.57620 1.22690 1.00638 0.97690 0.88737 1.60015 1.53456 1.02873 1.15007 1.21552 0.99507 0.93377 0.92265 1.20932 0.82144 0.82548 0.92149 1.90500 1.56903 1.53896 1.49899 1.41916 1.54061 1.16739 1.08169 1.19646 1.39477 1.02810 0.84848 0.90456 1.26039 0.96011 0.95167 1.03893 1.69659 1.41665 1.10965 1.33655 0.84980 0.78631 0.77644 0.77013 1.19823 1.19282 1.19702 1.21173 0.87919 0.86464 0.74878 1.90653 1.15759 1.87854 1.50925 1.21807 0.98480 0.89423 1.06481 1.22223 0.97067 0.94856 0.98294 0.91614 1.23021 1.02311 0.94268 0.98686 1.23642 0.85669 0.98976 0.95717 1.89138 1.36435 1.20874 1.86501 1.23470 1.01055 0.81864 0.95596 0.90426 0.89458 0.90282 0.90522 0.86763 0.77525 0.94007 0.88193 0.83742 0.91804 0.87330 0.76903 0.91226 0.86593 0.86120 0.90501 0.87483 0.88270 0.90685 0.91715 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 10.25 127.77 1.31 1.71 16 2 N -0.61 -8.30 2.86 -846.75 -2.42 -10.72 16 3 C 0.09 1.31 5.11 86.38 0.44 1.76 16 4 C 0.10 2.04 3.48 30.59 0.11 2.15 16 5 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 6 O -0.57 -15.15 11.52 -141.17 -1.63 -16.78 16 7 C 0.03 0.70 5.39 86.30 0.47 1.16 16 8 N -0.68 -22.21 6.13 -517.96 -3.17 -25.38 16 9 C 0.07 2.28 6.17 85.56 0.53 2.80 16 10 C 0.43 21.34 7.82 87.65 0.69 22.03 16 11 O -0.63 -36.15 15.78 -3.08 -0.05 -36.19 16 12 N -0.57 -29.94 5.29 -306.98 -1.62 -31.56 16 13 C -0.34 -19.62 9.68 84.04 0.81 -18.81 16 14 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 15 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 16 N -0.92 -49.87 13.05 21.66 0.28 -49.59 16 17 Si 0.99 43.45 29.55 68.60 2.03 45.47 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 19 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 C 0.51 8.82 7.09 87.66 0.62 9.44 16 22 O -0.57 -14.50 13.46 4.77 0.06 -14.43 16 23 C -0.12 -1.24 3.46 29.85 0.10 -1.14 16 24 C -0.11 -1.53 2.71 -9.78 -0.03 -1.55 16 25 H 0.07 1.33 7.96 -2.39 -0.02 1.31 16 26 C -0.15 -1.36 6.74 31.61 0.21 -1.15 16 27 C 0.04 0.41 7.64 72.48 0.55 0.97 16 28 O -0.41 -8.31 11.65 -148.98 -1.74 -10.04 16 29 C 0.06 1.03 6.31 72.48 0.46 1.49 16 30 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.09 0.27 6.43 -2.39 -0.02 0.26 16 32 H 0.08 0.44 8.07 -2.39 -0.02 0.42 16 33 H 0.08 1.32 7.43 -2.39 -0.02 1.30 16 34 H 0.11 1.02 8.07 -2.38 -0.02 1.00 16 35 H 0.38 9.19 8.74 -74.06 -0.65 8.54 16 36 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.34 12.70 7.82 -89.69 -0.70 12.00 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 41 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 42 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 43 H 0.12 0.79 7.40 -2.38 -0.02 0.77 16 44 H 0.12 0.56 7.98 -2.39 -0.02 0.54 16 45 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.11 0.41 7.73 -2.39 -0.02 0.39 16 47 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 48 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.06 0.99 7.78 -2.39 -0.02 0.97 16 50 H 0.07 1.71 7.71 -2.39 -0.02 1.69 16 Total: -1.00 -79.93 407.71 -2.62 -82.55 By element: Atomic # 1 Polarization: 47.08 SS G_CDS: -1.11 Total: 45.97 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 6.74 Total: 20.71 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -6.93 Total: -117.26 kcal Atomic # 8 Polarization: -74.10 SS G_CDS: -3.35 Total: -77.45 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -79.93 -2.62 -82.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571589468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.886 kcal (2) G-P(sol) polarization free energy of solvation -79.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds