Wall clock time and date at job start Wed Apr 1 2020 02:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.08999 * 109.47258 * 60.00427 * 4 3 2 6 6 O 1.42901 * 109.47064 * 299.99945 * 4 3 2 7 7 C 1.52999 * 109.46730 * 180.02562 * 4 3 2 8 8 N 1.46910 * 109.46906 * 184.99596 * 7 4 3 9 9 C 1.46901 * 110.99764 * 179.97438 * 8 7 4 10 10 C 1.50707 * 109.46934 * 180.02562 * 9 8 7 11 11 O 1.21295 * 119.99705 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00015 * 180.02562 * 10 9 8 13 13 C 1.37096 * 120.00049 * 179.97438 * 12 10 9 14 14 H 1.07997 * 119.99635 * 0.02562 * 13 12 10 15 15 C 1.38952 * 120.00221 * 179.97438 * 13 12 10 16 16 N 1.31412 * 119.99867 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99970 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47188 * 90.00149 * 17 15 13 19 19 H 1.48501 * 109.46938 * 210.00462 * 17 15 13 20 20 H 1.48500 * 109.47123 * 330.00073 * 17 15 13 21 21 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 22 22 O 1.21279 * 120.00410 * 179.97438 * 21 2 1 23 23 C 1.50703 * 119.99541 * 359.97438 * 21 2 1 24 24 C 1.53000 * 109.46653 * 179.97438 * 23 21 2 25 25 H 1.09000 * 110.45593 * 54.30203 * 24 23 21 26 26 C 1.54519 * 110.50997 * 176.90131 * 24 23 21 27 27 C 1.54479 * 104.05860 * 118.64890 * 26 24 23 28 28 O 1.44418 * 104.80733 * 23.98003 * 27 26 24 29 29 C 1.44647 * 105.36855 * 319.56577 * 28 27 26 30 30 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 31 31 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 32 32 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 33 33 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 34 34 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 35 35 H 0.96707 * 113.99726 * 300.00236 * 6 4 3 36 36 H 1.09002 * 109.47532 * 304.99812 * 7 4 3 37 37 H 1.09006 * 109.47512 * 65.00157 * 7 4 3 38 38 H 1.00894 * 110.99814 * 303.95269 * 8 7 4 39 39 H 1.08997 * 109.47501 * 300.00014 * 9 8 7 40 40 H 1.08993 * 109.46977 * 60.00746 * 9 8 7 41 41 H 0.97006 * 119.99807 * 359.97438 * 12 10 9 42 42 H 0.96995 * 120.00191 * 179.97438 * 16 15 13 43 43 H 1.08996 * 109.47057 * 299.99739 * 23 21 2 44 44 H 1.08996 * 109.47084 * 60.00703 * 23 21 2 45 45 H 1.08991 * 110.51072 * 237.29332 * 26 24 23 46 46 H 1.09004 * 110.50766 * 359.86877 * 26 24 23 47 47 H 1.08993 * 110.37392 * 142.81479 * 27 26 24 48 48 H 1.09005 * 110.36908 * 265.03807 * 27 26 24 49 49 H 1.08998 * 110.33997 * 281.59054 * 29 28 27 50 50 H 1.09003 * 110.50918 * 159.18333 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 3.0417 0.9507 1.9562 6 8 1.2040 1.8812 2.1162 7 6 3.2170 3.0357 1.4424 8 7 3.5664 3.3995 2.8222 9 6 4.3037 4.6695 2.8611 10 6 4.6446 5.0088 4.2893 11 8 4.3071 4.2655 5.1864 12 7 5.3245 6.1382 4.5697 13 6 5.6342 6.4472 5.8690 14 1 5.3337 5.7853 6.6678 15 6 6.3357 7.6113 6.1581 16 7 6.7018 8.4163 5.1861 17 14 6.7582 8.0318 7.9284 18 1 8.0780 7.4460 8.2749 19 1 6.8146 9.5073 8.0867 20 1 5.7178 7.4766 8.8310 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1672 -0.0010 23 6 1.3854 -2.4723 -0.0005 24 6 2.3796 -3.6352 -0.0018 25 1 3.0808 -3.5378 0.8271 26 6 1.6332 -4.9858 0.0764 27 6 2.0252 -5.7075 -1.2320 28 8 3.2821 -5.1115 -1.6199 29 6 3.1369 -3.6985 -1.3467 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 0.8900 0.5139 32 1 -0.3633 -0.8900 0.5139 33 1 3.1499 1.1384 -0.5139 34 1 1.6084 2.0284 -0.5139 35 1 0.6268 2.5439 1.7126 36 1 4.1277 2.9299 0.8528 37 1 2.5917 3.8159 1.0083 38 1 2.7436 3.4406 3.4046 39 1 5.2219 4.5746 2.2815 40 1 3.6862 5.4611 2.4367 41 1 5.5947 6.7324 3.8522 42 1 7.1911 9.2291 5.3879 43 1 0.7591 -2.5302 0.8897 44 1 0.7585 -2.5298 -0.8903 45 1 1.9670 -5.5571 0.9425 46 1 0.5559 -4.8249 0.1183 47 1 2.1507 -6.7754 -1.0534 48 1 1.2700 -5.5381 -1.9996 49 1 2.5544 -3.2185 -2.1331 50 1 4.1143 -3.2250 -1.2545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571589469.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:53 Heat of formation + Delta-G solvation = -167.353794 kcal Electronic energy + Delta-G solvation = -29740.532399 eV Core-core repulsion = 25381.742651 eV Total energy + Delta-G solvation = -4358.789748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.68870 -39.43624 -38.43869 -37.79633 -35.60469 -34.71378 -33.94714 -33.76212 -31.26297 -30.99889 -30.05777 -28.04310 -27.45615 -26.28635 -24.78791 -23.46185 -23.08807 -21.82627 -20.91507 -19.53065 -19.23984 -17.88566 -17.62570 -17.14613 -16.73353 -16.50337 -16.22865 -15.98433 -15.67344 -15.58246 -15.37902 -14.94661 -14.54804 -14.44759 -14.05908 -13.87978 -13.65588 -13.43505 -13.38901 -13.15975 -12.92821 -12.84309 -12.63097 -12.50800 -12.06512 -11.95340 -11.77538 -11.62666 -11.56598 -11.50183 -11.29925 -11.15810 -11.01494 -11.01074 -10.55719 -10.37922 -10.20240 -10.13607 -10.02320 -9.49243 -8.91128 -8.43298 -8.05264 -7.94118 -6.40155 -3.80846 2.30230 2.58450 3.19483 3.27797 3.33882 3.62436 3.92307 3.95687 4.02069 4.20002 4.24724 4.32061 4.41491 4.44648 4.63957 4.69618 4.75577 4.84927 4.88831 4.91533 4.97573 5.04595 5.06003 5.10059 5.19527 5.24442 5.28216 5.30842 5.32532 5.40538 5.41135 5.52043 5.61695 5.65696 5.76453 5.84192 5.95833 5.98293 6.12686 6.27721 6.44333 6.98011 7.19654 7.44941 7.56946 7.70618 7.84642 8.08235 8.63253 9.19723 9.56013 10.07857 10.77664 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022075 B = 0.001586 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.096443 B =17645.359644 C =18134.026685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.609 5.609 3 C 0.085 3.915 4 C 0.094 3.906 5 H 0.113 0.887 6 O -0.552 6.552 7 C 0.032 3.968 8 N -0.664 5.664 9 C 0.051 3.949 10 C 0.441 3.559 11 O -0.581 6.581 12 N -0.564 5.564 13 C -0.299 4.299 14 H 0.103 0.897 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.931 3.069 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.270 1.270 21 C 0.511 3.489 22 O -0.533 6.533 23 C -0.131 4.131 24 C -0.108 4.108 25 H 0.094 0.906 26 C -0.153 4.153 27 C 0.043 3.957 28 O -0.378 6.378 29 C 0.055 3.945 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.365 0.635 36 H 0.081 0.919 37 H 0.029 0.971 38 H 0.355 0.645 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.057 0.943 49 H 0.054 0.946 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.661 -20.056 -18.429 31.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C -0.039 4.039 4 C 0.034 3.966 5 H 0.131 0.869 6 O -0.356 6.356 7 C -0.099 4.099 8 N -0.297 5.297 9 C -0.082 4.082 10 C 0.226 3.774 11 O -0.465 6.465 12 N -0.201 5.201 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.180 4.180 16 N -0.544 5.544 17 Si 0.758 3.242 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.194 1.194 21 C 0.299 3.701 22 O -0.409 6.409 23 C -0.170 4.170 24 C -0.127 4.127 25 H 0.113 0.887 26 C -0.190 4.190 27 C -0.034 4.034 28 O -0.297 6.297 29 C -0.021 4.021 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.212 0.788 36 H 0.099 0.901 37 H 0.047 0.953 38 H 0.176 0.824 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.108 0.892 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.138 -21.326 -17.497 31.466 hybrid contribution -0.793 2.055 -0.096 2.205 sum -15.931 -19.271 -17.593 30.573 Atomic orbital electron populations 1.21838 0.79153 1.03998 1.01320 1.47689 1.07119 1.05705 1.73717 1.22164 0.98812 0.85137 0.97761 1.22439 0.84831 0.97375 0.91980 0.86923 1.86704 1.29010 1.62977 1.56950 1.22572 0.99815 0.95640 0.91890 1.59970 1.29479 1.32330 1.07940 1.21683 0.99031 0.90295 0.97176 1.19805 0.84358 0.83573 0.89665 1.90535 1.57639 1.50740 1.47601 1.41857 1.49193 1.19862 1.09192 1.19717 1.32802 1.05874 0.84491 0.87916 1.25260 0.97069 0.95874 0.99751 1.69612 1.39412 1.13301 1.32071 0.85848 0.79024 0.77343 0.82012 1.20385 1.20954 1.19436 1.20699 0.88168 0.85369 0.75875 1.90731 1.13815 1.87266 1.49089 1.21797 0.98955 0.91777 1.04515 1.22324 0.97048 0.92948 1.00374 0.88735 1.23033 1.00941 0.95831 0.99226 1.23392 0.86629 0.98524 0.94815 1.89179 1.34198 1.20344 1.85971 1.23539 1.02066 0.82276 0.94252 0.92806 0.90386 0.90973 0.88616 0.90230 0.78823 0.90082 0.95329 0.82436 0.89635 0.94007 0.77482 0.91904 0.88268 0.88813 0.90260 0.90277 0.89172 0.92440 0.92760 0.88000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 9.98 59.85 0.60 0.95 16 2 N -0.61 -4.74 2.80 -181.57 -0.51 -5.25 16 3 C 0.08 0.70 5.10 -4.04 -0.02 0.68 16 4 C 0.09 1.01 3.48 -26.73 -0.09 0.92 16 5 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 6 O -0.55 -5.69 11.58 -35.23 -0.41 -6.10 16 7 C 0.03 0.37 5.36 -3.82 -0.02 0.35 16 8 N -0.66 -11.13 6.12 -115.05 -0.70 -11.84 16 9 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 10 C 0.44 10.71 7.82 -10.98 -0.09 10.62 16 11 O -0.58 -16.35 15.78 5.54 0.09 -16.26 16 12 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 13 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 14 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 16 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 17 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 21 C 0.51 4.86 7.47 -10.98 -0.08 4.78 16 22 O -0.53 -7.10 14.49 5.56 0.08 -7.02 16 23 C -0.13 -0.81 3.47 -27.88 -0.10 -0.90 16 24 C -0.11 -0.83 2.71 -89.05 -0.24 -1.07 16 25 H 0.09 0.91 7.96 -51.93 -0.41 0.49 16 26 C -0.15 -0.86 6.74 -25.16 -0.17 -1.03 16 27 C 0.04 0.28 7.64 37.93 0.29 0.57 16 28 O -0.38 -3.88 11.65 -35.23 -0.41 -4.29 16 29 C 0.06 0.50 6.31 37.93 0.24 0.74 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.08 0.32 6.88 -51.93 -0.36 -0.04 16 32 H 0.07 0.25 6.44 -51.93 -0.33 -0.08 16 33 H 0.10 0.91 7.42 -51.93 -0.39 0.53 16 34 H 0.08 0.45 8.07 -51.93 -0.42 0.03 16 35 H 0.37 2.33 8.79 45.56 0.40 2.73 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.36 6.30 7.99 -39.29 -0.31 5.99 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.10 0.48 7.40 -51.93 -0.38 0.10 16 44 H 0.09 0.39 7.98 -51.93 -0.41 -0.02 16 45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.29 7.73 -51.93 -0.40 -0.11 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.05 0.44 7.78 -51.93 -0.40 0.04 16 50 H 0.10 1.09 7.71 -51.93 -0.40 0.69 16 LS Contribution 407.85 15.07 6.15 6.15 Total: -1.00 -36.22 407.85 -7.49 -43.72 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -7.47 Total: 13.95 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 0.05 Total: 9.35 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.55 Total: -55.80 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.65 Total: -33.67 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.22 -7.49 -43.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571589469.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.639 kcal (2) G-P(sol) polarization free energy of solvation -36.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds