Wall clock time and date at job start Wed Apr 1 2020 02:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.08999 * 109.47258 * 60.00427 * 4 3 2 6 6 O 1.42901 * 109.47064 * 299.99945 * 4 3 2 7 7 C 1.52999 * 109.46730 * 180.02562 * 4 3 2 8 8 N 1.46910 * 109.46906 * 184.99596 * 7 4 3 9 9 C 1.46901 * 110.99764 * 179.97438 * 8 7 4 10 10 C 1.50707 * 109.46934 * 180.02562 * 9 8 7 11 11 O 1.21295 * 119.99705 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00015 * 180.02562 * 10 9 8 13 13 C 1.37096 * 120.00049 * 179.97438 * 12 10 9 14 14 H 1.07997 * 119.99635 * 0.02562 * 13 12 10 15 15 C 1.38952 * 120.00221 * 179.97438 * 13 12 10 16 16 N 1.31412 * 119.99867 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99970 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47188 * 90.00149 * 17 15 13 19 19 H 1.48501 * 109.46938 * 210.00462 * 17 15 13 20 20 H 1.48500 * 109.47123 * 330.00073 * 17 15 13 21 21 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 22 22 O 1.21279 * 120.00410 * 179.97438 * 21 2 1 23 23 C 1.50703 * 119.99541 * 359.97438 * 21 2 1 24 24 C 1.53000 * 109.46653 * 179.97438 * 23 21 2 25 25 H 1.09000 * 110.45593 * 54.30203 * 24 23 21 26 26 C 1.54519 * 110.50997 * 176.90131 * 24 23 21 27 27 C 1.54479 * 104.05860 * 118.64890 * 26 24 23 28 28 O 1.44418 * 104.80733 * 23.98003 * 27 26 24 29 29 C 1.44647 * 105.36855 * 319.56577 * 28 27 26 30 30 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 31 31 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 32 32 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 33 33 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 34 34 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 35 35 H 0.96707 * 113.99726 * 300.00236 * 6 4 3 36 36 H 1.09002 * 109.47532 * 304.99812 * 7 4 3 37 37 H 1.09006 * 109.47512 * 65.00157 * 7 4 3 38 38 H 1.00894 * 110.99814 * 303.95269 * 8 7 4 39 39 H 1.08997 * 109.47501 * 300.00014 * 9 8 7 40 40 H 1.08993 * 109.46977 * 60.00746 * 9 8 7 41 41 H 0.97006 * 119.99807 * 359.97438 * 12 10 9 42 42 H 0.96995 * 120.00191 * 179.97438 * 16 15 13 43 43 H 1.08996 * 109.47057 * 299.99739 * 23 21 2 44 44 H 1.08996 * 109.47084 * 60.00703 * 23 21 2 45 45 H 1.08991 * 110.51072 * 237.29332 * 26 24 23 46 46 H 1.09004 * 110.50766 * 359.86877 * 26 24 23 47 47 H 1.08993 * 110.37392 * 142.81479 * 27 26 24 48 48 H 1.09005 * 110.36908 * 265.03807 * 27 26 24 49 49 H 1.08998 * 110.33997 * 281.59054 * 29 28 27 50 50 H 1.09003 * 110.50918 * 159.18333 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 3.0417 0.9507 1.9562 6 8 1.2040 1.8812 2.1162 7 6 3.2170 3.0357 1.4424 8 7 3.5664 3.3995 2.8222 9 6 4.3037 4.6695 2.8611 10 6 4.6446 5.0088 4.2893 11 8 4.3071 4.2655 5.1864 12 7 5.3245 6.1382 4.5697 13 6 5.6342 6.4472 5.8690 14 1 5.3337 5.7853 6.6678 15 6 6.3357 7.6113 6.1581 16 7 6.7018 8.4163 5.1861 17 14 6.7582 8.0318 7.9284 18 1 8.0780 7.4460 8.2749 19 1 6.8146 9.5073 8.0867 20 1 5.7178 7.4766 8.8310 21 6 2.1389 -1.1672 -0.0005 22 8 3.3517 -1.1672 -0.0010 23 6 1.3854 -2.4723 -0.0005 24 6 2.3796 -3.6352 -0.0018 25 1 3.0808 -3.5378 0.8271 26 6 1.6332 -4.9858 0.0764 27 6 2.0252 -5.7075 -1.2320 28 8 3.2821 -5.1115 -1.6199 29 6 3.1369 -3.6985 -1.3467 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 0.8900 0.5139 32 1 -0.3633 -0.8900 0.5139 33 1 3.1499 1.1384 -0.5139 34 1 1.6084 2.0284 -0.5139 35 1 0.6268 2.5439 1.7126 36 1 4.1277 2.9299 0.8528 37 1 2.5917 3.8159 1.0083 38 1 2.7436 3.4406 3.4046 39 1 5.2219 4.5746 2.2815 40 1 3.6862 5.4611 2.4367 41 1 5.5947 6.7324 3.8522 42 1 7.1911 9.2291 5.3879 43 1 0.7591 -2.5302 0.8897 44 1 0.7585 -2.5298 -0.8903 45 1 1.9670 -5.5571 0.9425 46 1 0.5559 -4.8249 0.1183 47 1 2.1507 -6.7754 -1.0534 48 1 1.2700 -5.5381 -1.9996 49 1 2.5544 -3.2185 -2.1331 50 1 4.1143 -3.2250 -1.2545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571589469.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:52 Heat of formation + Delta-G solvation = -198.838771 kcal Electronic energy + Delta-G solvation = -29741.897690 eV Core-core repulsion = 25381.742651 eV Total energy + Delta-G solvation = -4360.155039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.34857 -40.26118 -40.01139 -38.84199 -36.51514 -36.03765 -35.53424 -34.56733 -33.29263 -31.85660 -30.66905 -29.11663 -28.06440 -27.35393 -26.20152 -24.63564 -23.74469 -22.73463 -21.50534 -21.11265 -20.15146 -19.93662 -18.28134 -18.19088 -17.55518 -17.35432 -17.13683 -16.97082 -16.75960 -16.48530 -16.26118 -16.16638 -15.90784 -15.82109 -15.37597 -14.94896 -14.58742 -14.56301 -14.26676 -14.05592 -13.74040 -13.68982 -13.48323 -13.30696 -13.19385 -13.11276 -12.98000 -12.76185 -12.62507 -12.48555 -12.43923 -12.14122 -12.12882 -12.08961 -11.85062 -11.53891 -11.53210 -11.36664 -10.77374 -10.75310 -10.37822 -10.03814 -9.53691 -9.33219 -8.48548 -5.97612 1.36908 1.40697 1.53594 1.62721 2.01420 2.02661 2.28242 2.88199 3.05018 3.18428 3.42140 3.44157 3.53221 3.71451 3.83190 3.89587 3.94758 4.06206 4.15446 4.20390 4.28734 4.31970 4.37570 4.38559 4.44473 4.48416 4.53845 4.55990 4.66436 4.72612 4.74488 4.83508 4.85997 4.87493 4.93195 5.03563 5.10718 5.13609 5.23528 5.39002 5.52717 5.85502 5.86362 6.08193 6.38001 6.40632 6.58172 6.86359 7.10535 7.19643 7.53531 8.09439 8.68790 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022075 B = 0.001586 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.096443 B =17645.359644 C =18134.026685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.608 5.608 3 C 0.091 3.909 4 C 0.108 3.892 5 H 0.067 0.933 6 O -0.564 6.564 7 C 0.034 3.966 8 N -0.687 5.687 9 C 0.066 3.934 10 C 0.435 3.565 11 O -0.626 6.626 12 N -0.571 5.571 13 C -0.337 4.337 14 H 0.077 0.923 15 C -0.011 4.011 16 N -0.919 5.919 17 Si 0.994 3.006 18 H -0.272 1.272 19 H -0.268 1.268 20 H -0.273 1.273 21 C 0.498 3.502 22 O -0.584 6.584 23 C -0.121 4.121 24 C -0.108 4.108 25 H 0.064 0.936 26 C -0.144 4.144 27 C 0.036 3.964 28 O -0.410 6.410 29 C 0.056 3.944 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.385 0.615 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.348 0.652 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.076 0.924 46 H 0.109 0.891 47 H 0.100 0.900 48 H 0.076 0.924 49 H 0.067 0.933 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.137 -19.680 -19.694 33.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.340 5.340 3 C -0.033 4.033 4 C 0.047 3.953 5 H 0.085 0.915 6 O -0.371 6.371 7 C -0.096 4.096 8 N -0.320 5.320 9 C -0.066 4.066 10 C 0.222 3.778 11 O -0.512 6.512 12 N -0.209 5.209 13 C -0.467 4.467 14 H 0.095 0.905 15 C -0.211 4.211 16 N -0.560 5.560 17 Si 0.818 3.182 18 H -0.198 1.198 19 H -0.193 1.193 20 H -0.198 1.198 21 C 0.288 3.712 22 O -0.464 6.464 23 C -0.160 4.160 24 C -0.127 4.127 25 H 0.082 0.918 26 C -0.182 4.182 27 C -0.040 4.040 28 O -0.329 6.329 29 C -0.021 4.021 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.235 0.765 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.167 0.833 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.095 0.905 46 H 0.127 0.873 47 H 0.118 0.882 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.658 -20.926 -18.811 33.220 hybrid contribution -0.060 1.916 0.270 1.936 sum -17.718 -19.011 -18.540 31.923 Atomic orbital electron populations 1.22115 0.76715 1.05041 1.03068 1.47840 1.08623 1.04990 1.72512 1.22067 0.99069 0.86385 0.95818 1.22101 0.84597 0.95596 0.93016 0.91476 1.86665 1.28931 1.63937 1.57592 1.22657 1.00740 0.96940 0.89219 1.59937 1.29562 1.31694 1.10841 1.21535 1.00535 0.91939 0.92577 1.20937 0.82586 0.82222 0.92037 1.90499 1.58977 1.51879 1.49878 1.41918 1.49744 1.20641 1.08570 1.19677 1.35010 1.06737 0.85271 0.90481 1.26044 0.96137 0.95108 1.03851 1.69666 1.39111 1.13492 1.33687 0.84916 0.78590 0.77750 0.76990 1.19760 1.19256 1.19819 1.21388 0.87857 0.86910 0.75076 1.90714 1.16147 1.88050 1.51513 1.21814 0.98400 0.88990 1.06798 1.22253 0.97128 0.95071 0.98281 0.91788 1.23018 1.02363 0.94098 0.98693 1.23650 0.85667 0.98985 0.95727 1.89139 1.36537 1.20870 1.86389 1.23470 1.01003 0.81981 0.95611 0.90600 0.89710 0.89715 0.90359 0.86625 0.76535 0.89917 0.91994 0.83320 0.88054 0.91028 0.76890 0.91223 0.86282 0.85760 0.90473 0.87289 0.88227 0.90571 0.91530 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 9.98 127.77 1.28 1.67 16 2 N -0.61 -8.43 2.80 -846.74 -2.37 -10.80 16 3 C 0.09 1.36 5.10 86.38 0.44 1.80 16 4 C 0.11 2.25 3.48 30.59 0.11 2.36 16 5 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 6 O -0.56 -10.75 11.58 -148.98 -1.72 -12.47 16 7 C 0.03 0.75 5.36 86.30 0.46 1.21 16 8 N -0.69 -22.74 6.12 -517.90 -3.17 -25.91 16 9 C 0.07 2.33 6.17 85.56 0.53 2.86 16 10 C 0.43 21.45 7.82 87.66 0.69 22.14 16 11 O -0.63 -36.36 15.78 -3.08 -0.05 -36.41 16 12 N -0.57 -30.04 5.29 -306.98 -1.62 -31.66 16 13 C -0.34 -19.63 9.68 84.04 0.81 -18.82 16 14 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 15 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 16 N -0.92 -49.98 13.05 21.66 0.28 -49.70 16 17 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C 0.50 9.30 7.47 87.66 0.66 9.95 16 22 O -0.58 -16.60 14.49 -3.02 -0.04 -16.65 16 23 C -0.12 -1.27 3.47 29.85 0.10 -1.17 16 24 C -0.11 -1.65 2.71 -9.78 -0.03 -1.68 16 25 H 0.06 1.35 7.96 -2.39 -0.02 1.33 16 26 C -0.14 -1.38 6.74 31.61 0.21 -1.17 16 27 C 0.04 0.42 7.64 72.48 0.55 0.97 16 28 O -0.41 -8.55 11.65 -148.98 -1.74 -10.29 16 29 C 0.06 1.07 6.31 72.48 0.46 1.52 16 30 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.08 0.38 6.88 -2.39 -0.02 0.36 16 32 H 0.08 0.27 6.44 -2.38 -0.02 0.26 16 33 H 0.08 1.48 7.42 -2.39 -0.02 1.46 16 34 H 0.12 0.89 8.07 -2.38 -0.02 0.88 16 35 H 0.39 3.78 8.79 -74.05 -0.65 3.13 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.35 12.31 7.99 -89.70 -0.72 11.59 16 39 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.40 19.64 7.90 -92.70 -0.73 18.91 16 42 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 43 H 0.12 0.81 7.40 -2.39 -0.02 0.79 16 44 H 0.12 0.57 7.98 -2.39 -0.02 0.55 16 45 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.11 0.41 7.73 -2.38 -0.02 0.39 16 47 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 49 H 0.07 1.06 7.78 -2.39 -0.02 1.04 16 50 H 0.07 1.76 7.71 -2.39 -0.02 1.74 16 Total: -1.00 -83.53 407.85 -2.80 -86.33 By element: Atomic # 1 Polarization: 41.58 SS G_CDS: -1.13 Total: 40.45 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 6.73 Total: 21.50 kcal Atomic # 7 Polarization: -111.20 SS G_CDS: -6.88 Total: -118.08 kcal Atomic # 8 Polarization: -72.26 SS G_CDS: -3.55 Total: -75.82 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -83.53 -2.80 -86.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571589469.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.512 kcal (2) G-P(sol) polarization free energy of solvation -83.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds