Wall clock time and date at job start Wed Apr 1 2020 02:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00230 * 2 1 4 4 C 1.53004 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47063 * 306.35113 * 4 3 2 6 6 O 1.42901 * 109.46741 * 66.34500 * 4 3 2 7 7 C 1.42900 * 114.00463 * 270.00237 * 6 4 3 8 8 C 1.50691 * 109.47403 * 186.34460 * 4 3 2 9 9 O 1.21281 * 120.00228 * 248.83290 * 8 4 3 10 10 N 1.34781 * 119.99897 * 68.83486 * 8 4 3 11 11 C 1.46503 * 119.99859 * 5.00538 * 10 8 4 12 12 C 1.46495 * 120.00100 * 184.99831 * 10 8 4 13 13 C 1.53782 * 113.61466 * 216.23637 * 12 10 8 14 14 C 1.54051 * 86.98706 * 270.83977 * 13 12 10 15 15 N 1.46903 * 113.69570 * 220.01066 * 14 13 12 16 16 C 1.46900 * 110.99693 * 252.53199 * 15 14 13 17 17 C 1.50699 * 109.46890 * 179.97438 * 16 15 14 18 18 O 1.21299 * 120.00010 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00026 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99826 * 180.02562 * 19 17 16 21 21 H 1.07993 * 120.00551 * 0.02562 * 20 19 17 22 22 C 1.38959 * 119.99691 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99980 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99599 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47479 * 90.00055 * 24 22 20 26 26 H 1.48507 * 109.46884 * 209.99917 * 24 22 20 27 27 H 1.48495 * 109.47099 * 329.99421 * 24 22 20 28 28 C 1.53782 * 87.07856 * 334.56787 * 14 13 12 29 29 H 1.08999 * 109.46719 * 299.99918 * 1 2 3 30 30 H 1.08999 * 109.47141 * 59.99338 * 1 2 3 31 31 H 1.08994 * 109.47398 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47142 * 60.00681 * 3 2 1 33 33 H 1.08998 * 109.47206 * 300.00559 * 3 2 1 34 34 H 1.09000 * 109.46957 * 300.00519 * 7 6 4 35 35 H 1.08996 * 109.47187 * 59.99944 * 7 6 4 36 36 H 1.08994 * 109.47364 * 180.02562 * 7 6 4 37 37 H 1.09001 * 109.47451 * 25.32288 * 11 10 8 38 38 H 1.09000 * 109.47493 * 145.32582 * 11 10 8 39 39 H 1.09005 * 109.46784 * 265.32317 * 11 10 8 40 40 H 1.08998 * 112.85168 * 347.43434 * 12 10 8 41 41 H 1.09000 * 113.61543 * 25.43245 * 13 12 10 42 42 H 1.09007 * 113.61117 * 156.33597 * 13 12 10 43 43 H 1.09001 * 113.61300 * 89.11626 * 14 13 12 44 44 H 1.00899 * 110.99800 * 128.58195 * 15 14 13 45 45 H 1.09001 * 109.47204 * 299.99731 * 16 15 14 46 46 H 1.08999 * 109.47416 * 60.00163 * 16 15 14 47 47 H 0.96994 * 120.00428 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99601 * 179.97438 * 23 22 20 49 49 H 1.09001 * 113.61549 * 270.88282 * 28 14 13 50 50 H 1.09002 * 113.61468 * 139.97566 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8500 0.5486 0.8268 6 8 3.9671 0.6084 -1.2350 7 6 4.0485 -0.8181 -1.2136 8 6 4.1479 2.5525 0.1564 9 8 4.7490 3.0576 -0.7680 10 7 4.0276 3.2147 1.3241 11 6 3.3980 2.5621 2.4748 12 6 4.5265 4.5870 1.4428 13 6 5.1380 4.9034 2.8179 14 6 3.7231 5.3228 3.2600 15 7 3.7011 6.5207 4.1101 16 6 3.3922 6.1718 5.5032 17 6 3.3790 7.4229 6.3433 18 8 3.6044 8.4994 5.8316 19 7 3.1159 7.3459 7.6628 20 6 3.1035 8.4842 8.4269 21 1 3.3040 9.4426 7.9714 22 6 2.8327 8.4047 9.7875 23 7 2.5881 7.2385 10.3417 24 14 2.8150 9.9557 10.8284 25 1 1.4445 10.5273 10.8419 26 1 3.2271 9.6251 12.2163 27 1 3.7595 10.9476 10.2547 28 6 3.4317 5.6136 1.7783 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6888 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 4.7582 -1.1301 -0.4474 35 1 3.0663 -1.2348 -0.9902 36 1 4.3833 -1.1777 -2.1866 37 1 3.4989 1.4810 2.3794 38 1 3.8855 2.8930 3.3918 39 1 2.3412 2.8268 2.5092 40 1 5.1592 4.8813 0.6054 41 1 5.5174 4.0248 3.3396 42 1 5.8518 5.7270 2.7992 43 1 3.1323 4.5030 3.6685 44 1 3.0489 7.2039 3.7553 45 1 2.4144 5.6924 5.5495 46 1 4.1507 5.4875 5.8832 47 1 2.9354 6.4852 8.0719 48 1 2.3995 7.1830 11.2916 49 1 3.6799 6.6310 1.4760 50 1 2.4346 5.3080 1.4612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571661807.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:43 Heat of formation + Delta-G solvation = -116.214036 kcal Electronic energy + Delta-G solvation = -30399.610733 eV Core-core repulsion = 26043.038571 eV Total energy + Delta-G solvation = -4356.572161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08189 -39.44897 -38.36705 -37.99103 -37.23597 -35.22279 -34.03360 -33.10320 -31.24634 -30.95167 -27.89867 -27.53563 -26.86643 -26.34636 -25.77511 -24.69969 -23.93993 -22.42121 -20.67951 -19.38465 -18.89472 -18.07447 -17.89903 -17.37172 -16.99800 -16.51832 -16.23415 -16.07858 -15.82360 -15.36687 -15.17451 -15.13779 -14.67688 -14.54786 -14.39669 -14.06366 -13.79780 -13.69081 -13.43647 -13.16849 -13.05332 -12.82446 -12.41468 -12.32499 -12.17517 -12.08264 -11.93408 -11.89203 -11.60651 -11.58595 -11.35558 -11.06497 -10.76030 -10.49302 -10.41114 -10.32648 -10.23486 -10.17935 -9.83975 -9.53397 -8.99020 -8.47566 -8.10469 -7.98552 -6.44379 -3.85097 2.07637 2.28785 3.15960 3.20419 3.24863 3.30996 3.44522 3.88029 4.08765 4.14284 4.27610 4.34014 4.37013 4.44411 4.46605 4.65708 4.71555 4.75576 4.85057 4.89201 4.91834 4.98632 5.03765 5.13337 5.16548 5.19241 5.21962 5.23646 5.31687 5.38822 5.46336 5.65046 5.66004 5.69639 5.77759 5.83012 5.94937 6.04246 6.21686 6.36737 6.51098 6.62357 6.96998 7.23418 7.52916 7.62031 7.77555 8.03910 8.58565 9.15465 9.51612 10.03034 10.73329 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020234 B = 0.001820 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.465603 B =15382.232938 C =16170.687167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.042 3.958 4 C 0.078 3.922 5 H 0.095 0.905 6 O -0.356 6.356 7 C 0.028 3.972 8 C 0.521 3.479 9 O -0.509 6.509 10 N -0.595 5.595 11 C 0.061 3.939 12 C 0.117 3.883 13 C -0.132 4.132 14 C 0.053 3.947 15 N -0.656 5.656 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.269 1.269 28 C -0.151 4.151 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.075 0.925 44 H 0.351 0.649 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.102 0.898 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 -19.157 -18.403 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.035 4.035 4 C 0.016 3.984 5 H 0.113 0.887 6 O -0.274 6.274 7 C -0.068 4.068 8 C 0.307 3.693 9 O -0.382 6.382 10 N -0.329 5.329 11 C -0.082 4.082 12 C 0.013 3.987 13 C -0.172 4.172 14 C -0.058 4.058 15 N -0.288 5.288 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.190 4.190 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.124 0.876 43 H 0.093 0.907 44 H 0.172 0.828 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.121 0.879 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.667 -18.254 -19.114 26.483 hybrid contribution -1.502 -0.105 1.272 1.971 sum -3.168 -18.359 -17.842 25.796 Atomic orbital electron populations 1.22793 0.80287 1.03079 1.00397 1.87832 1.20364 1.26926 1.95527 1.23055 0.92302 0.85960 1.02191 1.21899 0.92687 0.93832 0.89991 0.88749 1.88016 1.87691 1.20728 1.30941 1.22965 1.01256 0.80088 1.02502 1.20054 0.80543 0.86249 0.82414 1.90737 1.40355 1.67787 1.39356 1.47507 1.59881 1.14356 1.11187 1.22180 0.98274 0.97903 0.89853 1.21892 0.96716 0.80063 1.00024 1.23526 0.97795 1.01794 0.94037 1.23382 0.96947 0.93395 0.92028 1.60190 1.57320 1.10632 1.00680 1.21731 0.99604 0.97305 0.89609 1.19827 0.84426 0.90007 0.83215 1.90529 1.54237 1.29656 1.72290 1.41867 1.61540 1.10306 1.06334 1.19709 1.44963 0.88387 0.89826 0.87914 1.25268 0.97203 0.98311 0.97197 1.69611 1.48075 1.23709 1.12951 0.85851 0.78654 0.81125 0.78633 1.20433 1.20914 1.19388 1.23647 0.99125 1.00372 0.95838 0.93704 0.93785 0.89278 0.91420 0.91603 0.94100 0.92176 0.89403 0.90725 0.89447 0.91991 0.87015 0.91210 0.87592 0.90709 0.82825 0.93989 0.89693 0.77495 0.91877 0.87924 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.96 8.89 -38.70 -0.34 -3.30 16 3 C 0.04 0.33 5.44 37.16 0.20 0.53 16 4 C 0.08 0.71 2.09 -27.89 -0.06 0.65 16 5 H 0.09 0.67 6.40 -51.93 -0.33 0.34 16 6 O -0.36 -3.98 9.90 -59.12 -0.58 -4.57 16 7 C 0.03 0.21 10.71 101.05 1.08 1.30 16 8 C 0.52 5.89 7.02 -10.99 -0.08 5.81 16 9 O -0.51 -7.87 16.01 -14.20 -0.23 -8.10 16 10 N -0.59 -5.48 3.08 -173.00 -0.53 -6.01 16 11 C 0.06 0.38 7.37 59.85 0.44 0.83 16 12 C 0.12 1.19 4.46 -67.12 -0.30 0.89 16 13 C -0.13 -1.39 7.11 -25.78 -0.18 -1.57 16 14 C 0.05 0.58 3.49 -66.76 -0.23 0.35 16 15 N -0.66 -9.91 6.19 -106.98 -0.66 -10.57 16 16 C 0.05 0.84 6.01 -4.98 -0.03 0.81 16 17 C 0.44 10.16 7.82 -10.99 -0.09 10.07 16 18 O -0.58 -15.63 15.78 5.54 0.09 -15.55 16 19 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 20 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 23 N -0.90 -24.22 13.05 55.50 0.72 -23.49 16 24 Si 0.93 20.87 29.55 -169.99 -5.02 15.84 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 C -0.15 -1.50 7.34 -25.91 -0.19 -1.69 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.42 5.92 -51.93 -0.31 0.11 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 35 H 0.06 0.43 6.44 -51.93 -0.33 0.10 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.36 6.03 -51.93 -0.31 0.04 16 38 H 0.09 0.56 5.16 -51.93 -0.27 0.29 16 39 H 0.06 0.34 7.17 -51.93 -0.37 -0.04 16 40 H 0.11 1.30 7.23 -51.93 -0.38 0.92 16 41 H 0.07 0.68 7.21 -51.93 -0.37 0.30 16 42 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.08 0.72 5.35 -51.93 -0.28 0.45 16 44 H 0.35 5.55 8.25 -39.29 -0.32 5.22 16 45 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16 46 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 47 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -34.61 402.13 -6.88 -41.49 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -7.76 Total: 10.99 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 1.44 Total: 11.31 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.53 Total: -54.18 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -1.07 Total: -31.52 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.61 -6.88 -41.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571661807.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.724 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds