Wall clock time and date at job start Wed Apr 1 2020 02:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00230 * 2 1 4 4 C 1.53004 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47063 * 306.35113 * 4 3 2 6 6 O 1.42901 * 109.46741 * 66.34500 * 4 3 2 7 7 C 1.42900 * 114.00463 * 270.00237 * 6 4 3 8 8 C 1.50691 * 109.47403 * 186.34460 * 4 3 2 9 9 O 1.21281 * 120.00228 * 248.83290 * 8 4 3 10 10 N 1.34781 * 119.99897 * 68.83486 * 8 4 3 11 11 C 1.46503 * 119.99859 * 5.00538 * 10 8 4 12 12 C 1.46495 * 120.00100 * 184.99831 * 10 8 4 13 13 C 1.53782 * 113.61466 * 216.23637 * 12 10 8 14 14 C 1.54051 * 86.98706 * 270.83977 * 13 12 10 15 15 N 1.46903 * 113.69570 * 220.01066 * 14 13 12 16 16 C 1.46900 * 110.99693 * 252.53199 * 15 14 13 17 17 C 1.50699 * 109.46890 * 179.97438 * 16 15 14 18 18 O 1.21299 * 120.00010 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00026 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99826 * 180.02562 * 19 17 16 21 21 H 1.07993 * 120.00551 * 0.02562 * 20 19 17 22 22 C 1.38959 * 119.99691 * 180.02562 * 20 19 17 23 23 N 1.31412 * 119.99980 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99599 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47479 * 90.00055 * 24 22 20 26 26 H 1.48507 * 109.46884 * 209.99917 * 24 22 20 27 27 H 1.48495 * 109.47099 * 329.99421 * 24 22 20 28 28 C 1.53782 * 87.07856 * 334.56787 * 14 13 12 29 29 H 1.08999 * 109.46719 * 299.99918 * 1 2 3 30 30 H 1.08999 * 109.47141 * 59.99338 * 1 2 3 31 31 H 1.08994 * 109.47398 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47142 * 60.00681 * 3 2 1 33 33 H 1.08998 * 109.47206 * 300.00559 * 3 2 1 34 34 H 1.09000 * 109.46957 * 300.00519 * 7 6 4 35 35 H 1.08996 * 109.47187 * 59.99944 * 7 6 4 36 36 H 1.08994 * 109.47364 * 180.02562 * 7 6 4 37 37 H 1.09001 * 109.47451 * 25.32288 * 11 10 8 38 38 H 1.09000 * 109.47493 * 145.32582 * 11 10 8 39 39 H 1.09005 * 109.46784 * 265.32317 * 11 10 8 40 40 H 1.08998 * 112.85168 * 347.43434 * 12 10 8 41 41 H 1.09000 * 113.61543 * 25.43245 * 13 12 10 42 42 H 1.09007 * 113.61117 * 156.33597 * 13 12 10 43 43 H 1.09001 * 113.61300 * 89.11626 * 14 13 12 44 44 H 1.00899 * 110.99800 * 128.58195 * 15 14 13 45 45 H 1.09001 * 109.47204 * 299.99731 * 16 15 14 46 46 H 1.08999 * 109.47416 * 60.00163 * 16 15 14 47 47 H 0.96994 * 120.00428 * 0.02562 * 19 17 16 48 48 H 0.97003 * 119.99601 * 179.97438 * 23 22 20 49 49 H 1.09001 * 113.61549 * 270.88282 * 28 14 13 50 50 H 1.09002 * 113.61468 * 139.97566 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8500 0.5486 0.8268 6 8 3.9671 0.6084 -1.2350 7 6 4.0485 -0.8181 -1.2136 8 6 4.1479 2.5525 0.1564 9 8 4.7490 3.0576 -0.7680 10 7 4.0276 3.2147 1.3241 11 6 3.3980 2.5621 2.4748 12 6 4.5265 4.5870 1.4428 13 6 5.1380 4.9034 2.8179 14 6 3.7231 5.3228 3.2600 15 7 3.7011 6.5207 4.1101 16 6 3.3922 6.1718 5.5032 17 6 3.3790 7.4229 6.3433 18 8 3.6044 8.4994 5.8316 19 7 3.1159 7.3459 7.6628 20 6 3.1035 8.4842 8.4269 21 1 3.3040 9.4426 7.9714 22 6 2.8327 8.4047 9.7875 23 7 2.5881 7.2385 10.3417 24 14 2.8150 9.9557 10.8284 25 1 1.4445 10.5273 10.8419 26 1 3.2271 9.6251 12.2163 27 1 3.7595 10.9476 10.2547 28 6 3.4317 5.6136 1.7783 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6888 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 4.7582 -1.1301 -0.4474 35 1 3.0663 -1.2348 -0.9902 36 1 4.3833 -1.1777 -2.1866 37 1 3.4989 1.4810 2.3794 38 1 3.8855 2.8930 3.3918 39 1 2.3412 2.8268 2.5092 40 1 5.1592 4.8813 0.6054 41 1 5.5174 4.0248 3.3396 42 1 5.8518 5.7270 2.7992 43 1 3.1323 4.5030 3.6685 44 1 3.0489 7.2039 3.7553 45 1 2.4144 5.6924 5.5495 46 1 4.1507 5.4875 5.8832 47 1 2.9354 6.4852 8.0719 48 1 2.3995 7.1830 11.2916 49 1 3.6799 6.6310 1.4760 50 1 2.4346 5.3080 1.4612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571661807.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:42 Heat of formation + Delta-G solvation = -143.292715 kcal Electronic energy + Delta-G solvation = -30400.784952 eV Core-core repulsion = 26043.038571 eV Total energy + Delta-G solvation = -4357.746381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.89053 -40.37606 -39.85353 -38.91590 -37.91372 -36.30902 -35.81952 -34.27447 -33.21834 -31.63945 -28.77168 -28.19114 -27.93314 -26.96842 -26.68215 -26.04022 -24.97396 -23.32144 -21.50500 -21.05837 -19.95796 -19.71683 -18.81518 -18.05098 -17.86348 -17.55968 -17.12713 -16.86226 -16.79815 -16.48505 -16.30475 -16.10760 -15.94426 -15.75214 -15.52715 -15.14085 -14.94349 -14.69480 -14.34968 -14.13897 -13.89778 -13.61781 -13.51267 -13.42381 -13.23816 -13.06414 -12.88737 -12.87273 -12.80593 -12.44866 -12.43015 -12.38475 -12.17734 -12.11965 -11.66749 -11.49481 -11.35994 -11.02180 -10.80967 -10.53575 -10.30621 -10.00110 -9.76234 -9.27382 -8.46020 -5.94228 1.27503 1.38421 1.42592 1.54841 1.54941 2.07346 2.29984 2.64919 2.81630 2.98258 3.21704 3.43254 3.49229 3.60118 3.66723 3.68393 3.84826 3.91242 4.09455 4.15431 4.26320 4.31578 4.37931 4.50002 4.50597 4.54081 4.54561 4.57414 4.60666 4.62670 4.67570 4.81586 4.84900 4.86440 4.86853 4.93766 4.94168 5.02386 5.18980 5.42036 5.52744 5.94370 5.96460 6.04146 6.18451 6.24901 6.43026 6.61836 6.96819 7.14148 7.58281 8.13969 8.71212 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020234 B = 0.001820 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.465603 B =15382.232938 C =16170.687167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.048 3.952 4 C 0.080 3.920 5 H 0.118 0.882 6 O -0.390 6.390 7 C 0.026 3.974 8 C 0.518 3.482 9 O -0.562 6.562 10 N -0.586 5.586 11 C 0.049 3.951 12 C 0.120 3.880 13 C -0.128 4.128 14 C 0.057 3.943 15 N -0.673 5.673 16 C 0.066 3.934 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.275 1.275 28 C -0.143 4.143 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.345 0.655 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.397 0.603 48 H 0.277 0.723 49 H 0.094 0.906 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.043 -20.974 -17.380 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.029 4.029 4 C 0.018 3.982 5 H 0.136 0.864 6 O -0.308 6.308 7 C -0.070 4.070 8 C 0.306 3.694 9 O -0.440 6.440 10 N -0.319 5.319 11 C -0.092 4.092 12 C 0.015 3.985 13 C -0.167 4.167 14 C -0.052 4.052 15 N -0.305 5.305 16 C -0.066 4.066 17 C 0.224 3.776 18 O -0.512 6.512 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.200 1.200 28 C -0.182 4.182 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.165 0.835 45 H 0.089 0.911 46 H 0.122 0.878 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.113 0.887 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.800 -20.122 -18.061 27.183 hybrid contribution -1.154 0.422 0.906 1.527 sum -3.954 -19.700 -17.155 26.420 Atomic orbital electron populations 1.22966 0.79022 1.04181 1.00932 1.87806 1.21705 1.26676 1.95615 1.22953 0.91287 0.86222 1.02424 1.21959 0.93457 0.92612 0.90152 0.86450 1.87976 1.88053 1.22533 1.32256 1.23093 1.01866 0.78524 1.03473 1.20532 0.79821 0.86928 0.82154 1.90710 1.42881 1.69169 1.41225 1.47538 1.59093 1.13756 1.11557 1.22482 0.99043 0.99049 0.88595 1.21729 0.96685 0.80927 0.99160 1.23456 0.97388 1.01748 0.94140 1.23505 0.97524 0.92511 0.91668 1.60175 1.57502 1.12425 1.00400 1.21599 1.01845 0.93887 0.89298 1.20991 0.82039 0.91665 0.82949 1.90500 1.55534 1.32149 1.73022 1.41930 1.62266 1.09785 1.07072 1.19648 1.47154 0.88562 0.90961 0.90480 1.26008 0.96262 1.01312 0.97661 1.69662 1.47821 1.24983 1.13513 0.84954 0.78710 0.77528 0.77310 1.19618 1.19553 1.19975 1.23573 0.99576 0.99926 0.95117 0.92575 0.93844 0.87973 0.89450 0.93090 0.92882 0.91780 0.88699 0.88710 0.88919 0.90223 0.89023 0.89953 0.89124 0.88205 0.83480 0.91108 0.87798 0.76890 0.91309 0.88722 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 11.01 113.37 1.25 1.45 16 2 O -0.40 -5.21 8.89 -145.66 -1.29 -6.51 16 3 C 0.05 0.66 5.44 71.98 0.39 1.05 16 4 C 0.08 1.34 2.09 29.85 0.06 1.40 16 5 H 0.12 1.36 6.40 -2.39 -0.02 1.34 16 6 O -0.39 -8.52 9.90 -126.14 -1.25 -9.76 16 7 C 0.03 0.36 10.71 113.37 1.21 1.58 16 8 C 0.52 11.33 7.02 87.65 0.62 11.94 16 9 O -0.56 -17.88 16.01 15.86 0.25 -17.63 16 10 N -0.59 -9.73 3.08 -819.63 -2.53 -12.25 16 11 C 0.05 0.45 7.37 127.77 0.94 1.39 16 12 C 0.12 2.33 4.46 45.52 0.20 2.54 16 13 C -0.13 -2.50 7.11 31.21 0.22 -2.27 16 14 C 0.06 1.12 3.49 45.53 0.16 1.28 16 15 N -0.67 -19.28 6.19 -492.37 -3.05 -22.33 16 16 C 0.07 2.06 6.01 85.56 0.51 2.57 16 17 C 0.44 20.04 7.82 87.66 0.69 20.72 16 18 O -0.63 -34.13 15.78 -3.09 -0.05 -34.18 16 19 N -0.57 -28.60 5.29 -306.98 -1.62 -30.22 16 20 C -0.33 -18.69 9.68 84.04 0.81 -17.88 16 21 H 0.08 4.64 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 23 N -0.92 -48.54 13.05 21.67 0.28 -48.26 16 24 Si 0.99 42.41 29.55 68.60 2.03 44.44 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 C -0.14 -2.65 7.34 31.12 0.23 -2.42 16 29 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.04 0.35 8.14 -2.39 -0.02 0.34 16 31 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 0.80 5.92 -2.39 -0.01 0.79 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.59 8.08 -2.39 -0.02 0.57 16 35 H 0.06 0.83 6.44 -2.39 -0.02 0.81 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 0.51 6.03 -2.39 -0.01 0.50 16 38 H 0.09 0.80 5.16 -2.39 -0.01 0.78 16 39 H 0.08 0.50 7.17 -2.38 -0.02 0.48 16 40 H 0.09 2.20 7.23 -2.39 -0.02 2.18 16 41 H 0.08 1.40 7.21 -2.39 -0.02 1.38 16 42 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.10 1.51 5.35 -2.39 -0.01 1.49 16 44 H 0.35 10.62 8.25 -89.69 -0.74 9.88 16 45 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 46 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 47 H 0.40 18.60 7.90 -92.71 -0.73 17.87 16 48 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 49 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -76.86 402.13 0.05 -76.81 By element: Atomic # 1 Polarization: 37.23 SS G_CDS: -0.49 Total: 36.74 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 7.77 Total: 23.14 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -6.91 Total: -113.06 kcal Atomic # 8 Polarization: -65.74 SS G_CDS: -2.34 Total: -68.07 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -76.86 0.05 -76.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571661807.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.487 kcal (2) G-P(sol) polarization free energy of solvation -76.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds