Wall clock time and date at job start Wed Apr 1 2020 02:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42905 * 113.99771 * 2 1 4 4 C 1.53004 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.46908 * 53.19020 * 4 3 2 6 6 O 1.42898 * 109.47095 * 293.19261 * 4 3 2 7 7 C 1.42893 * 113.99992 * 150.00071 * 6 4 3 8 8 C 1.50697 * 109.46906 * 173.18970 * 4 3 2 9 9 O 1.21279 * 119.99912 * 100.26240 * 8 4 3 10 10 N 1.34778 * 120.00306 * 280.26190 * 8 4 3 11 11 C 1.46497 * 119.99779 * 5.25096 * 10 8 4 12 12 C 1.46496 * 120.00277 * 185.25636 * 10 8 4 13 13 C 1.53780 * 113.61519 * 122.01409 * 12 10 8 14 14 C 1.53775 * 87.08228 * 140.06731 * 13 12 10 15 15 N 1.46906 * 113.61544 * 219.93623 * 14 13 12 16 16 C 1.46904 * 110.99861 * 203.46998 * 15 14 13 17 17 C 1.50701 * 109.46821 * 179.97438 * 16 15 14 18 18 O 1.21288 * 119.99747 * 0.02562 * 17 16 15 19 19 N 1.34772 * 119.99481 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99719 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99807 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00375 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99692 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00483 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47078 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47382 * 119.99648 * 24 22 20 27 27 H 1.48505 * 109.47082 * 240.00113 * 24 22 20 28 28 C 1.53773 * 113.69121 * 219.54961 * 12 10 8 29 29 H 1.09001 * 109.47252 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47903 * 299.99967 * 1 2 3 31 31 H 1.09004 * 109.47657 * 60.00254 * 1 2 3 32 32 H 1.09002 * 109.47271 * 59.99490 * 3 2 1 33 33 H 1.09006 * 109.46782 * 300.00025 * 3 2 1 34 34 H 1.08998 * 109.47173 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.47316 * 299.99855 * 7 6 4 36 36 H 1.09003 * 109.47381 * 59.99353 * 7 6 4 37 37 H 1.08999 * 109.47944 * 274.30920 * 11 10 8 38 38 H 1.09006 * 109.47392 * 34.31172 * 11 10 8 39 39 H 1.09007 * 109.47336 * 154.30789 * 11 10 8 40 40 H 1.09001 * 112.84602 * 350.82156 * 12 10 8 41 41 H 1.09003 * 113.61698 * 25.51349 * 13 12 10 42 42 H 1.09007 * 113.61394 * 254.61524 * 13 12 10 43 43 H 1.08999 * 113.61801 * 89.11625 * 14 13 12 44 44 H 1.00900 * 110.99979 * 79.51558 * 15 14 13 45 45 H 1.09003 * 109.46843 * 299.99886 * 16 15 14 46 46 H 1.08998 * 109.47270 * 60.00172 * 16 15 14 47 47 H 0.96992 * 120.00721 * 0.02562 * 19 17 16 48 48 H 0.97004 * 119.99808 * 179.97438 * 23 22 20 49 49 H 1.09002 * 113.61567 * 105.46221 * 28 12 10 50 50 H 1.08998 * 113.61976 * 334.55495 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8493 0.5421 -0.8219 6 8 3.9679 0.6185 1.2393 7 6 5.1709 -0.1462 1.1402 8 6 4.1475 2.5515 -0.1678 9 8 4.5740 3.1481 0.7981 10 7 4.2210 3.1108 -1.3919 11 6 3.6039 2.4430 -2.5405 12 6 4.9180 4.3864 -1.5738 13 6 6.0728 4.3184 -2.5870 14 6 5.6158 5.7007 -3.0819 15 7 5.6766 5.8528 -4.5418 16 6 5.7802 7.2686 -4.9197 17 6 5.8407 7.3846 -6.4211 18 8 5.8009 6.3861 -7.1085 19 7 5.9380 8.5978 -6.9997 20 6 5.9926 8.7034 -8.3656 21 1 5.9572 7.8143 -8.9778 22 6 6.0934 9.9541 -8.9623 23 7 6.1360 11.0359 -8.2175 24 14 6.1671 10.0980 -10.8233 25 1 6.1017 8.7430 -11.4275 26 1 5.0200 10.9101 -11.3028 27 1 7.4387 10.7551 -11.2191 28 6 4.2166 5.3392 -2.5560 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3635 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6884 1.8465 0.8899 33 1 1.6884 1.8464 -0.8900 34 1 5.4318 -0.5419 2.1217 35 1 5.0205 -0.9716 0.4443 36 1 5.9779 0.4912 0.7787 37 1 4.3019 1.7168 -2.9569 38 1 2.6964 1.9318 -2.2192 39 1 3.3539 3.1837 -3.3003 40 1 5.1926 4.8570 -0.6297 41 1 5.9567 3.5285 -3.3291 42 1 7.0601 4.3246 -2.1249 43 1 6.0811 6.5307 -2.5502 44 1 4.8808 5.4178 -4.9841 45 1 4.9093 7.8085 -4.5480 46 1 6.6846 7.6952 -4.4860 47 1 5.9695 9.3963 -6.4500 48 1 6.2068 11.9091 -8.6340 49 1 3.7053 6.1696 -2.0690 50 1 3.5929 4.8286 -3.2897 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571661808.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:46 Heat of formation + Delta-G solvation = -119.969411 kcal Electronic energy + Delta-G solvation = -30081.638480 eV Core-core repulsion = 25724.903473 eV Total energy + Delta-G solvation = -4356.735007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.97141 -39.41939 -38.30692 -37.98424 -37.28905 -35.39641 -34.04836 -33.07113 -31.27503 -31.11423 -27.64462 -27.29768 -26.89196 -26.44523 -25.83373 -24.77987 -23.95760 -22.53782 -20.22334 -19.58979 -19.03811 -18.11349 -17.89582 -17.44856 -16.88685 -16.64695 -16.24304 -15.94777 -15.77706 -15.51290 -15.25061 -14.93361 -14.77197 -14.51674 -14.42886 -14.07518 -13.63940 -13.54157 -13.45022 -13.30724 -13.08866 -12.81079 -12.57708 -12.27872 -12.22985 -12.04236 -11.81228 -11.66738 -11.57874 -11.50727 -11.15785 -11.13351 -11.02472 -10.86775 -10.78092 -10.36389 -10.24634 -10.18406 -9.64569 -9.54582 -8.94686 -8.48089 -8.06839 -7.98118 -6.44188 -3.85130 2.07440 2.43091 3.14433 3.25188 3.27524 3.28659 3.32284 3.87991 4.07259 4.11548 4.26711 4.36010 4.41041 4.43894 4.50429 4.62296 4.70227 4.79478 4.84364 4.87920 4.92257 4.98097 5.07160 5.07690 5.12500 5.14687 5.23731 5.24414 5.32977 5.37299 5.40437 5.54860 5.61125 5.72813 5.76618 5.89691 5.94267 5.99502 6.22532 6.29312 6.54467 6.60317 6.99794 7.20449 7.53044 7.60394 7.77267 8.03980 8.58439 9.15402 9.51758 10.02837 10.73537 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.001682 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.085670 B =16642.778026 C =17196.176615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.067 3.933 4 C 0.078 3.922 5 H 0.094 0.906 6 O -0.351 6.351 7 C 0.029 3.971 8 C 0.494 3.506 9 O -0.517 6.517 10 N -0.600 5.600 11 C 0.060 3.940 12 C 0.119 3.881 13 C -0.137 4.137 14 C 0.073 3.927 15 N -0.654 5.654 16 C 0.049 3.951 17 C 0.440 3.560 18 O -0.585 6.585 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C -0.182 4.182 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.101 0.899 44 H 0.350 0.650 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.073 0.927 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.674 -18.661 17.997 27.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.010 4.010 4 C 0.016 3.984 5 H 0.112 0.888 6 O -0.268 6.268 7 C -0.067 4.067 8 C 0.280 3.720 9 O -0.392 6.392 10 N -0.334 5.334 11 C -0.083 4.083 12 C 0.015 3.985 13 C -0.176 4.176 14 C -0.039 4.039 15 N -0.285 5.285 16 C -0.083 4.083 17 C 0.225 3.775 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.222 4.222 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.171 0.829 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.765 -19.073 18.125 27.433 hybrid contribution -0.842 1.209 -0.737 1.647 sum -8.607 -17.864 17.389 26.374 Atomic orbital electron populations 1.22797 0.80325 1.03162 1.00297 1.87899 1.20160 1.26570 1.95481 1.22535 0.90372 0.86067 1.02009 1.22003 0.94161 0.92392 0.89867 0.88832 1.88027 1.42261 1.68058 1.28471 1.22890 0.86328 0.94330 1.03192 1.21118 0.79986 0.87928 0.82939 1.90718 1.47333 1.62661 1.38465 1.47886 1.55084 1.22688 1.07759 1.22084 0.98096 0.98602 0.89471 1.22579 0.93518 0.83316 0.99092 1.23545 0.98177 0.98308 0.97582 1.22809 0.94375 0.97637 0.89068 1.60007 1.49248 1.14115 1.05091 1.21729 1.01330 0.89415 0.95854 1.19822 0.84532 0.84378 0.88721 1.90518 1.55627 1.36384 1.64364 1.41877 1.63967 1.06446 1.07721 1.19755 1.47209 0.94157 0.81773 0.87859 1.25272 0.97312 0.94826 1.00582 1.69624 1.50397 0.98226 1.36007 0.85796 0.77730 0.78540 0.82250 1.19217 1.20773 1.20725 1.24264 0.98931 0.99534 0.99492 0.89218 0.93743 0.93799 0.91428 0.90976 0.88985 0.93541 0.93871 0.91788 0.90919 0.89494 0.86151 0.89079 0.90820 0.88142 0.82928 0.93736 0.89521 0.77446 0.91907 0.90776 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.38 -3.28 10.69 -38.24 -0.41 -3.69 16 3 C 0.07 0.54 5.27 37.16 0.20 0.74 16 4 C 0.08 0.72 1.99 -27.88 -0.06 0.67 16 5 H 0.09 0.70 7.14 -51.93 -0.37 0.33 16 6 O -0.35 -3.94 9.94 -58.46 -0.58 -4.52 16 7 C 0.03 0.24 10.81 101.05 1.09 1.33 16 8 C 0.49 5.48 6.89 -10.99 -0.08 5.41 16 9 O -0.52 -7.75 16.09 -13.53 -0.22 -7.96 16 10 N -0.60 -5.51 3.09 -173.01 -0.53 -6.05 16 11 C 0.06 0.39 8.92 59.85 0.53 0.92 16 12 C 0.12 1.18 4.23 -67.12 -0.28 0.89 16 13 C -0.14 -1.42 7.49 -25.92 -0.19 -1.62 16 14 C 0.07 0.83 4.16 -66.90 -0.28 0.55 16 15 N -0.65 -9.85 6.24 -107.13 -0.67 -10.52 16 16 C 0.05 0.83 6.02 -4.97 -0.03 0.80 16 17 C 0.44 10.17 7.82 -10.99 -0.09 10.08 16 18 O -0.58 -15.56 15.78 5.55 0.09 -15.48 16 19 N -0.56 -14.10 5.29 -10.96 -0.06 -14.15 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 24 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 28 C -0.18 -1.73 7.19 -25.92 -0.19 -1.92 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.43 5.92 -51.93 -0.31 0.13 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.30 8.09 -51.93 -0.42 -0.12 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.36 4.80 -51.93 -0.25 0.11 16 39 H 0.09 0.54 5.60 -51.93 -0.29 0.25 16 40 H 0.12 1.35 7.19 -51.93 -0.37 0.97 16 41 H 0.09 0.97 7.61 -51.93 -0.40 0.58 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.10 1.09 7.88 -51.93 -0.41 0.68 16 44 H 0.35 5.35 7.92 -39.29 -0.31 5.04 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 47 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.09 0.82 5.49 -51.93 -0.29 0.54 16 LS Contribution 408.57 15.07 6.16 6.16 Total: -1.00 -34.78 408.57 -6.91 -41.70 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -7.90 Total: 11.11 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 1.50 Total: 11.19 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.54 Total: -54.33 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -1.12 Total: -31.65 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.78 -6.91 -41.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571661808.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.273 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds