Wall clock time and date at job start Wed Apr 1 2020 02:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47126 * 2 1 4 4 C 1.53010 * 109.46936 * 240.00135 * 2 1 3 5 5 C 1.50701 * 109.47017 * 177.42786 * 4 2 1 6 6 H 1.08004 * 120.00107 * 4.93582 * 5 4 2 7 7 C 1.37878 * 120.00129 * 184.93988 * 5 4 2 8 8 N 1.31515 * 119.99949 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00185 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47247 * 89.99575 * 9 7 5 11 11 H 1.48493 * 109.46875 * 209.99910 * 9 7 5 12 12 H 1.48497 * 109.46880 * 329.99705 * 9 7 5 13 13 N 1.46898 * 109.47228 * 120.00892 * 2 1 3 14 14 C 1.46951 * 111.00360 * 60.60720 * 13 2 1 15 15 C 1.53051 * 109.36448 * 176.81638 * 14 13 2 16 16 N 1.46954 * 109.38749 * 58.39246 * 15 14 13 17 17 C 1.39507 * 111.00517 * 176.82375 * 16 15 14 18 18 C 1.38806 * 120.56260 * 63.52641 * 17 16 15 19 19 N 1.31817 * 120.75752 * 179.68127 * 18 17 16 20 20 C 1.31935 * 122.07185 * 0.63542 * 19 18 17 21 21 C 1.37989 * 121.05503 * 359.65692 * 20 19 18 22 22 C 1.39660 * 119.10840 * 0.02562 * 21 20 19 23 23 C 1.48371 * 120.93064 * 179.97438 * 22 21 20 24 24 N 1.34072 * 126.67438 * 185.16988 * 23 22 21 25 25 N 1.28983 * 107.26721 * 179.97438 * 24 23 22 26 26 N 1.28728 * 108.94921 * 0.02562 * 25 24 23 27 27 H 0.97006 * 125.33635 * 180.02562 * 26 25 24 28 28 N 1.28878 * 109.32757 * 359.72587 * 26 25 24 29 29 C 1.46959 * 110.87419 * 300.71550 * 16 15 14 30 30 C 1.46961 * 110.99834 * 296.80916 * 13 2 1 31 31 H 1.09001 * 109.46914 * 59.99947 * 1 2 3 32 32 H 1.09004 * 109.47211 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47346 * 299.99582 * 1 2 3 34 34 H 1.08992 * 109.47283 * 297.42742 * 4 2 1 35 35 H 1.09002 * 109.46682 * 57.43359 * 4 2 1 36 36 H 0.96994 * 120.00644 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.48909 * 56.84683 * 14 13 2 38 38 H 1.09007 * 109.51049 * 296.79261 * 14 13 2 39 39 H 1.09008 * 109.48678 * 178.36972 * 15 14 13 40 40 H 1.09003 * 109.48933 * 298.40633 * 15 14 13 41 41 H 1.07995 * 119.62193 * 359.97438 * 18 17 16 42 42 H 1.08005 * 119.46933 * 179.67467 * 20 19 18 43 43 H 1.08003 * 120.44223 * 180.02562 * 21 20 19 44 44 H 1.08997 * 109.47071 * 299.31696 * 29 16 15 45 45 H 1.08997 * 109.50783 * 179.27688 * 29 16 15 46 46 H 1.09008 * 109.48422 * 303.15858 * 30 13 2 47 47 H 1.08998 * 109.48647 * 63.21511 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2494 5 6 3.5456 -0.6663 -1.2817 6 1 4.0883 -0.2377 -0.4520 7 6 4.2304 -1.1631 -2.3704 8 7 3.5697 -1.6854 -3.3804 9 14 6.0968 -1.0956 -2.4101 10 1 6.6499 -2.3360 -1.8096 11 1 6.5579 -0.9783 -3.8167 12 1 6.5661 0.0812 -1.6356 13 7 2.0197 -0.6927 1.1993 14 6 1.5605 -2.0883 1.2259 15 6 2.1555 -2.7952 2.4460 16 7 1.7481 -2.0865 3.6672 17 6 2.2135 -2.7444 4.8060 18 6 3.5757 -2.8718 5.0403 19 7 4.0197 -3.4872 6.1181 20 6 3.2031 -4.0161 7.0093 21 6 1.8341 -3.9411 6.8532 22 6 1.3127 -3.2937 5.7309 23 6 -0.1526 -3.1899 5.5225 24 7 -0.7748 -2.6838 4.4481 25 7 -2.0435 -2.7787 4.6603 26 7 -2.2353 -3.3181 5.8133 27 1 -3.1013 -3.5012 6.2100 28 7 -1.0963 -3.5825 6.3553 29 6 2.2069 -0.6907 3.6403 30 6 1.6118 0.0162 2.4203 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8900 34 1 1.7148 -1.7613 -1.2266 35 1 1.6395 -0.2346 -2.1387 36 1 4.0514 -2.0352 -4.1462 37 1 1.8854 -2.5954 0.3174 38 1 0.4724 -2.1125 1.2864 39 1 1.7931 -3.8226 2.4837 40 1 3.2430 -2.7958 2.3715 41 1 4.2799 -2.4580 4.3338 42 1 3.6127 -4.5155 7.8749 43 1 1.1747 -4.3772 7.5890 44 1 3.2949 -0.6669 3.5796 45 1 1.8823 -0.1833 4.5488 46 1 1.9743 1.0436 2.3825 47 1 0.5244 0.0165 2.4945 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603465894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:25 Heat of formation + Delta-G solvation = 190.598333 kcal Electronic energy + Delta-G solvation = -30737.122965 eV Core-core repulsion = 26765.749608 eV Total energy + Delta-G solvation = -3971.373357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.54258 -40.78610 -38.86523 -36.29813 -34.67858 -34.03990 -32.86442 -31.60622 -31.35215 -30.57812 -29.27144 -27.25439 -25.73138 -25.39647 -24.48353 -23.41605 -23.03178 -22.47768 -21.92636 -20.09548 -19.44633 -18.52259 -17.47989 -17.23979 -16.63774 -16.46787 -16.09451 -15.19879 -14.90788 -14.51600 -14.42588 -14.40662 -14.07870 -13.94346 -13.75625 -13.66078 -13.29825 -12.87007 -12.50269 -12.22871 -12.00659 -11.85998 -11.68113 -11.60960 -11.37712 -11.33237 -11.14955 -11.11289 -10.99540 -10.68106 -10.55414 -10.32695 -10.27290 -10.01511 -9.79019 -9.53966 -9.09571 -9.06287 -8.93615 -8.23450 -8.22385 -7.38037 -5.85682 -3.83484 0.38871 0.82525 1.10431 2.06889 2.29026 3.41502 3.46504 3.47731 3.51880 3.56532 3.70863 4.01773 4.30136 4.57980 4.62658 4.77297 4.79392 4.95444 5.05343 5.22445 5.35577 5.41240 5.44429 5.50734 5.59554 5.64122 5.71907 5.78818 5.88445 5.90566 5.90984 6.03676 6.09098 6.16661 6.20744 6.24929 6.35351 6.48906 6.55928 6.70731 6.80897 7.04252 7.09218 7.27228 7.61278 7.71938 7.75988 7.97129 8.07412 8.09326 8.17024 8.62748 9.24214 9.78631 11.26237 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.003391 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.184839 B = 8255.254068 C = 9717.895474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 H 0.069 0.931 4 C 0.028 3.972 5 C -0.490 4.490 6 H 0.063 0.937 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.512 5.512 14 C 0.060 3.940 15 C 0.069 3.931 16 N -0.488 5.488 17 C 0.090 3.910 18 C 0.077 3.923 19 N -0.465 5.465 20 C 0.089 3.911 21 C -0.133 4.133 22 C 0.041 3.959 23 C 0.217 3.783 24 N -0.206 5.206 25 N -0.060 5.060 26 N -0.234 5.234 27 H 0.472 0.528 28 N -0.297 5.297 29 C 0.068 3.932 30 C 0.055 3.945 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.016 0.984 35 H 0.021 0.979 36 H 0.257 0.743 37 H 0.097 0.903 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.145 0.855 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.802 -4.066 23.017 25.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.020 4.020 3 H 0.087 0.913 4 C -0.009 4.009 5 C -0.529 4.529 6 H 0.081 0.919 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.235 5.235 14 C -0.068 4.068 15 C -0.056 4.056 16 N -0.211 5.211 17 C -0.010 4.010 18 C -0.083 4.083 19 N -0.174 5.174 20 C -0.067 4.067 21 C -0.156 4.156 22 C 0.029 3.971 23 C -0.063 4.063 24 N -0.079 5.079 25 N -0.056 5.056 26 N -0.079 5.079 27 H 0.326 0.674 28 N -0.150 5.150 29 C -0.058 4.058 30 C -0.073 4.073 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.034 0.966 35 H 0.039 0.961 36 H 0.066 0.934 37 H 0.115 0.885 38 H 0.058 0.942 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.180 0.820 42 H 0.179 0.821 43 H 0.162 0.838 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.419 -4.022 22.596 24.809 hybrid contribution -0.179 -0.235 0.297 0.420 sum -9.598 -4.258 22.893 25.187 Atomic orbital electron populations 1.22494 0.99646 1.01424 1.00563 1.21877 0.90142 0.98333 0.91618 0.91297 1.19234 0.96367 0.95130 0.90149 1.21210 0.91535 1.37687 1.02427 0.91908 1.25013 0.97887 0.96075 0.95905 1.69963 1.35070 1.41736 1.07735 0.86654 0.86619 0.78282 0.76747 1.20973 1.21702 1.20019 1.62321 1.58857 1.01405 1.00961 1.22133 0.97500 0.90000 0.97139 1.22254 0.98880 0.96845 0.87659 1.59715 1.59317 1.02236 0.99804 1.19849 0.91586 0.96243 0.93277 1.23513 0.93926 0.95919 0.94935 1.67573 1.40309 1.07364 1.02128 1.22697 0.89225 0.96835 0.97953 1.22158 0.97194 0.99152 0.97091 1.17563 0.85548 0.98957 0.95031 1.23244 0.94835 0.99597 0.88605 1.76566 0.95322 1.15414 1.20605 1.79112 1.13432 1.12103 1.00926 1.47753 1.09160 1.38879 1.12117 0.67391 1.74860 0.91891 1.22684 1.25562 1.22201 0.98350 0.86730 0.98559 1.22101 0.98261 0.97206 0.89762 0.92830 0.92854 0.93937 0.96599 0.96052 0.93369 0.88532 0.94213 0.91094 0.93273 0.81953 0.82083 0.83764 0.93451 0.91307 0.90907 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.50 37.16 0.32 -2.89 16 2 C 0.09 1.78 2.35 -67.71 -0.16 1.62 16 3 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.70 4.18 -27.88 -0.12 0.59 16 5 C -0.49 -13.49 8.80 -34.44 -0.30 -13.79 16 6 H 0.06 1.73 7.68 -52.48 -0.40 1.33 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 9 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.51 -9.44 4.31 -226.49 -0.98 -10.42 16 14 C 0.06 1.08 4.83 -3.77 -0.02 1.06 16 15 C 0.07 1.07 5.36 -3.77 -0.02 1.05 16 16 N -0.49 -6.80 3.08 -170.60 -0.52 -7.32 16 17 C 0.09 1.14 4.74 -83.38 -0.40 0.74 16 18 C 0.08 0.95 9.83 -17.35 -0.17 0.78 16 19 N -0.46 -5.54 10.34 -13.15 -0.14 -5.68 16 20 C 0.09 0.83 11.16 -17.60 -0.20 0.63 16 21 C -0.13 -1.24 9.79 -39.14 -0.38 -1.62 16 22 C 0.04 0.48 5.93 -104.42 -0.62 -0.14 16 23 C 0.22 2.66 7.92 -156.30 -1.24 1.42 16 24 N -0.21 -2.85 11.09 32.14 0.36 -2.49 16 25 N -0.06 -0.70 13.47 60.35 0.81 0.11 16 26 N -0.23 -1.89 7.90 60.35 0.48 -1.42 16 27 H 0.47 1.45 8.96 -340.35 -3.05 -1.60 16 28 N -0.30 -2.98 12.19 32.16 0.39 -2.58 16 29 C 0.07 0.94 5.32 -3.77 -0.02 0.92 16 30 C 0.06 0.86 5.21 -3.77 -0.02 0.84 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.96 6.49 -51.93 -0.34 0.62 16 33 H 0.04 0.68 6.55 -51.93 -0.34 0.34 16 34 H 0.02 0.42 6.19 -51.93 -0.32 0.10 16 35 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 37 H 0.10 1.99 6.07 -51.93 -0.32 1.68 16 38 H 0.04 0.72 6.50 -51.93 -0.34 0.38 16 39 H 0.07 1.06 8.13 -51.92 -0.42 0.64 16 40 H 0.05 0.79 7.45 -51.93 -0.39 0.40 16 41 H 0.16 1.98 7.08 -52.49 -0.37 1.60 16 42 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 43 H 0.14 1.02 7.98 -52.48 -0.42 0.60 16 44 H 0.05 0.66 7.28 -51.93 -0.38 0.28 16 45 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 46 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 47 H 0.04 0.66 6.55 -51.93 -0.34 0.32 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -32.88 375.84 -10.75 -43.64 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -9.09 Total: -2.64 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -3.44 Total: -7.46 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 1.14 Total: -56.16 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.88 -10.75 -43.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603465894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.235 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 201.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 190.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds