Wall clock time and date at job start Wed Apr 1 2020 02:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09004 * 109.47408 * 2 1 4 4 C 1.53002 * 109.47356 * 240.00337 * 2 1 3 5 5 C 1.50700 * 109.47160 * 174.99805 * 4 2 1 6 6 H 1.08000 * 120.00448 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99896 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99850 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99943 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47082 * 60.00558 * 9 7 5 11 11 H 1.48498 * 109.47136 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47225 * 300.00575 * 9 7 5 13 13 N 1.46904 * 109.47261 * 120.00016 * 2 1 3 14 14 C 1.46956 * 111.00153 * 295.00254 * 13 2 1 15 15 C 1.53043 * 109.36281 * 183.18894 * 14 13 2 16 16 N 1.46959 * 109.36791 * 301.59574 * 15 14 13 17 17 C 1.39031 * 111.00373 * 183.19139 * 16 15 14 18 18 C 1.38938 * 119.65170 * 179.97438 * 17 16 15 19 19 C 1.39400 * 118.95801 * 179.97438 * 18 17 16 20 20 C 1.48465 * 120.85713 * 179.97438 * 19 18 17 21 21 N 1.34051 * 126.67479 * 359.68561 * 20 19 18 22 22 N 1.28991 * 107.26519 * 180.26319 * 21 20 19 23 23 N 1.28727 * 108.94656 * 0.02562 * 22 21 20 24 24 H 0.96997 * 125.34472 * 179.97438 * 23 22 21 25 25 N 1.28874 * 109.31728 * 359.97438 * 23 22 21 26 26 C 1.39927 * 118.28076 * 0.25448 * 19 18 17 27 27 C 1.37817 * 119.19168 * 359.47637 * 26 19 18 28 28 N 1.32013 * 120.97722 * 0.53536 * 27 26 19 29 29 C 1.46956 * 110.87703 * 59.32254 * 16 15 14 30 30 C 1.46955 * 110.99874 * 58.80462 * 13 2 1 31 31 H 1.09004 * 109.46955 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47406 * 299.99220 * 1 2 3 33 33 H 1.08995 * 109.47276 * 60.00114 * 1 2 3 34 34 H 1.09005 * 109.46985 * 294.99593 * 4 2 1 35 35 H 1.08999 * 109.47307 * 54.99691 * 4 2 1 36 36 H 0.97000 * 119.99715 * 179.97438 * 8 7 5 37 37 H 1.08992 * 109.49054 * 63.21822 * 14 13 2 38 38 H 1.09000 * 109.48270 * 303.15444 * 14 13 2 39 39 H 1.09009 * 109.48506 * 181.63056 * 15 14 13 40 40 H 1.09003 * 109.49127 * 61.57020 * 15 14 13 41 41 H 1.07999 * 120.52006 * 0.02562 * 18 17 16 42 42 H 1.07996 * 120.40280 * 179.74266 * 26 19 18 43 43 H 1.08005 * 119.50750 * 180.27112 * 27 26 19 44 44 H 1.08997 * 109.48663 * 60.64849 * 29 16 15 45 45 H 1.08996 * 109.48964 * 180.71615 * 29 16 15 46 46 H 1.09006 * 109.48443 * 296.77458 * 30 13 2 47 47 H 1.09000 * 109.49230 * 56.81977 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1933 -2.3579 8 7 3.5764 -1.8376 -3.2996 9 14 6.0920 -1.0608 -2.4369 10 1 6.6846 -1.6860 -1.2273 11 1 6.5871 -1.7609 -3.6493 12 1 6.4843 0.3702 -2.4972 13 7 2.0196 -0.6925 1.1995 14 6 1.6485 0.0393 2.4186 15 6 2.2435 -0.6700 3.6372 16 7 1.7490 -2.0530 3.6856 17 6 2.2125 -2.7085 4.8208 18 6 1.8515 -4.0310 5.0464 19 6 2.3248 -4.6744 6.1889 20 6 1.9650 -6.0867 6.4719 21 7 1.1852 -6.8796 5.7234 22 7 1.1193 -8.0227 6.3174 23 7 1.8198 -7.9741 7.3963 24 1 1.9343 -8.7044 8.0243 25 7 2.3451 -6.8029 7.5111 26 6 3.1430 -3.9527 7.0652 27 6 3.4595 -2.6451 6.7663 28 7 2.9941 -2.0658 5.6751 29 6 2.1202 -2.7849 2.4665 30 6 1.5252 -2.0755 1.2478 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.7517 -1.7715 -1.2056 35 1 1.6053 -0.2617 -2.1370 36 1 4.0608 -2.2443 -4.0350 37 1 0.5627 0.0684 2.5089 38 1 2.0366 1.0565 2.3643 39 1 1.9453 -0.1452 4.5449 40 1 3.3308 -0.6749 3.5602 41 1 1.2148 -4.5527 4.3472 42 1 3.5253 -4.4162 7.9626 43 1 4.0942 -2.0848 7.4368 44 1 3.2060 -2.8139 2.3762 45 1 1.7321 -3.8020 2.5206 46 1 0.4379 -2.0705 1.3249 47 1 1.8230 -2.6002 0.3399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603466721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:04 Heat of formation + Delta-G solvation = 188.164243 kcal Electronic energy + Delta-G solvation = -29627.914218 eV Core-core repulsion = 25656.435311 eV Total energy + Delta-G solvation = -3971.478907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.84442 -40.81025 -38.88183 -36.29535 -34.93280 -34.20356 -32.89321 -31.90927 -31.43509 -30.57278 -29.48920 -27.30287 -26.03294 -25.32769 -24.93082 -23.72538 -23.08487 -22.36163 -21.76027 -20.18898 -19.58184 -18.62422 -17.61812 -17.52360 -16.61327 -16.14973 -16.01066 -15.40807 -15.04329 -14.75627 -14.56409 -14.51765 -14.26600 -13.95095 -13.80577 -13.71059 -13.32907 -12.93914 -12.71482 -12.22735 -12.06653 -11.89917 -11.84305 -11.71086 -11.61705 -11.51507 -11.46970 -11.13934 -10.99748 -10.73761 -10.59285 -10.40735 -10.30245 -9.94245 -9.86115 -9.65662 -9.61534 -9.12768 -8.97618 -8.24503 -8.12080 -7.46996 -5.87854 -3.85724 0.32562 0.83814 0.98609 1.83166 2.07058 3.18461 3.41825 3.44032 3.45602 3.49405 3.71574 3.86669 4.38232 4.52993 4.58263 4.75963 4.81304 4.91309 4.98031 5.08160 5.22586 5.38379 5.44312 5.49189 5.54526 5.64893 5.71483 5.73368 5.78150 5.85497 5.94013 5.98209 5.99464 6.05031 6.10248 6.22941 6.25211 6.38076 6.47215 6.58606 6.69225 6.86251 6.99348 7.15514 7.54374 7.68878 7.75189 7.86712 7.90453 8.02049 8.13698 8.58912 9.20338 9.76133 11.23949 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.002584 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.031576 B =10831.895604 C =11399.475548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.071 0.929 4 C 0.029 3.971 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.513 5.513 14 C 0.049 3.951 15 C 0.073 3.927 16 N -0.477 5.477 17 C 0.327 3.673 18 C -0.146 4.146 19 C 0.047 3.953 20 C 0.218 3.782 21 N -0.258 5.258 22 N -0.046 5.046 23 N -0.227 5.227 24 H 0.476 0.524 25 N -0.286 5.286 26 C -0.174 4.174 27 C 0.130 3.870 28 N -0.508 5.508 29 C 0.062 3.938 30 C 0.056 3.944 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.020 0.980 35 H 0.019 0.981 36 H 0.258 0.742 37 H 0.036 0.964 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.162 0.838 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.037 0.963 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 -8.061 24.217 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.089 0.911 4 C -0.008 4.008 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.237 5.237 14 C -0.080 4.080 15 C -0.054 4.054 16 N -0.194 5.194 17 C 0.094 3.906 18 C -0.171 4.171 19 C 0.036 3.964 20 C -0.062 4.062 21 N -0.131 5.131 22 N -0.041 5.041 23 N -0.073 5.073 24 H 0.331 0.669 25 N -0.138 5.138 26 C -0.198 4.198 27 C -0.027 4.027 28 N -0.222 5.222 29 C -0.063 4.063 30 C -0.072 4.072 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.167 0.833 42 H 0.159 0.841 43 H 0.180 0.820 44 H 0.078 0.922 45 H 0.101 0.899 46 H 0.055 0.945 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.383 -7.831 23.648 25.294 hybrid contribution 0.912 -1.001 0.678 1.514 sum -3.471 -8.832 24.326 26.111 Atomic orbital electron populations 1.22513 0.99670 1.01384 1.00736 1.21905 0.90124 0.98450 0.91570 0.91110 1.19229 0.96339 0.95350 0.89924 1.21139 0.91783 1.33062 1.06995 0.92194 1.24999 0.97931 0.95892 0.95998 1.69951 1.35288 1.36869 1.12328 0.86710 0.86474 0.78017 0.77050 1.20429 1.21689 1.20499 1.62312 1.58901 1.01244 1.01197 1.22249 0.98049 0.97738 0.89985 1.22072 0.99281 0.85741 0.98257 1.59326 1.54434 1.04657 1.00953 1.19810 0.89097 0.89141 0.92519 1.21570 1.02733 0.94595 0.98223 1.17281 0.97708 0.86119 0.95317 1.23523 0.96864 0.96735 0.89066 1.76166 1.16860 0.96502 1.23568 1.78975 1.12026 1.17308 0.95817 1.47762 1.30232 1.10992 1.18285 0.66912 1.74916 1.21129 0.93749 1.24034 1.21936 1.00828 0.95995 1.01022 1.22481 0.95803 0.91633 0.92804 1.67657 1.10149 1.39305 1.05134 1.22455 1.00346 0.96805 0.86696 1.22208 0.96897 0.90721 0.97370 0.92868 0.93958 0.92580 0.96197 0.96292 0.93263 0.94609 0.90372 0.89940 0.92123 0.83298 0.84108 0.82042 0.92245 0.89883 0.94473 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 8.49 37.15 0.32 -2.81 16 2 C 0.09 1.74 2.30 -67.71 -0.16 1.58 16 3 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 4 C 0.03 0.71 4.27 -27.88 -0.12 0.59 16 5 C -0.49 -13.55 8.84 -34.44 -0.30 -13.85 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 22.03 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.51 -9.50 4.41 -226.49 -1.00 -10.50 16 14 C 0.05 0.75 5.25 -3.77 -0.02 0.73 16 15 C 0.07 1.08 4.78 -3.77 -0.02 1.06 16 16 N -0.48 -6.93 4.73 -173.08 -0.82 -7.74 16 17 C 0.33 4.44 6.40 -155.04 -0.99 3.45 16 18 C -0.15 -1.81 8.90 -38.89 -0.35 -2.16 16 19 C 0.05 0.53 5.91 -104.62 -0.62 -0.09 16 20 C 0.22 2.40 7.97 -156.30 -1.25 1.16 16 21 N -0.26 -3.07 12.32 32.16 0.40 -2.67 16 22 N -0.05 -0.44 13.47 60.35 0.81 0.37 16 23 N -0.23 -1.47 7.90 60.35 0.48 -1.00 16 24 H 0.48 0.67 8.96 -340.37 -3.05 -2.38 16 25 N -0.29 -2.55 12.17 32.17 0.39 -2.16 16 26 C -0.17 -1.65 9.79 -39.10 -0.38 -2.04 16 27 C 0.13 1.30 11.16 -17.63 -0.20 1.10 16 28 N -0.51 -6.59 8.69 -12.51 -0.11 -6.70 16 29 C 0.06 0.96 5.37 -3.77 -0.02 0.94 16 30 C 0.06 0.98 4.82 -3.77 -0.02 0.96 16 31 H 0.05 0.90 6.46 -51.93 -0.34 0.57 16 32 H 0.04 0.64 6.59 -51.93 -0.34 0.30 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.52 6.11 -51.93 -0.32 0.20 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.04 0.55 6.60 -51.93 -0.34 0.20 16 38 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 39 H 0.08 1.13 7.82 -51.92 -0.41 0.72 16 40 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 41 H 0.15 1.81 7.08 -52.49 -0.37 1.44 16 42 H 0.14 1.03 7.97 -52.49 -0.42 0.61 16 43 H 0.16 1.10 8.06 -52.48 -0.42 0.67 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.08 1.12 6.78 -51.93 -0.35 0.76 16 46 H 0.04 0.62 6.47 -51.93 -0.34 0.28 16 47 H 0.10 2.03 6.07 -51.93 -0.32 1.72 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -32.98 377.28 -11.75 -44.73 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -9.08 Total: -2.76 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -4.22 Total: -8.01 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.89 Total: -56.64 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.98 -11.75 -44.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603466721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.890 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds