Wall clock time and date at job start Wed Apr 1 2020 01:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46854 * 2 1 4 4 C 1.53002 * 109.47176 * 240.00584 * 2 1 3 5 5 O 1.45193 * 109.47150 * 119.99921 * 2 1 3 6 6 C 1.34639 * 116.99820 * 60.00383 * 5 2 1 7 7 O 1.21506 * 120.00350 * 0.02562 * 6 5 2 8 8 N 1.34779 * 119.99925 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00243 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47342 * 180.02562 * 9 8 6 11 11 H 1.08996 * 109.47049 * 54.89103 * 10 9 8 12 12 O 1.42900 * 109.46745 * 294.89226 * 10 9 8 13 13 C 1.50701 * 109.47122 * 174.89083 * 10 9 8 14 14 O 1.21285 * 119.99428 * 110.77298 * 13 10 9 15 15 N 1.34772 * 120.00067 * 290.77831 * 13 10 9 16 16 C 1.46966 * 120.59176 * 184.60687 * 15 13 10 17 17 C 1.53817 * 108.40014 * 124.75484 * 16 15 13 18 18 N 1.46959 * 108.57758 * 49.63510 * 17 16 15 19 19 C 1.36935 * 120.59409 * 124.66959 * 18 17 16 20 20 H 1.08003 * 120.00019 * 206.76450 * 19 18 17 21 21 C 1.38811 * 120.00152 * 26.76880 * 19 18 17 22 22 N 1.31624 * 119.99818 * 16.64140 * 21 19 18 23 23 Si 1.86799 * 120.00491 * 196.64656 * 21 19 18 24 24 H 1.48495 * 109.47138 * 89.99296 * 23 21 19 25 25 H 1.48499 * 109.47355 * 209.99962 * 23 21 19 26 26 H 1.48503 * 109.46746 * 329.99902 * 23 21 19 27 27 C 1.46964 * 118.81513 * 304.64553 * 18 17 16 28 28 C 1.46963 * 120.59531 * 4.87649 * 15 13 10 29 29 H 1.08995 * 109.47101 * 299.99451 * 1 2 3 30 30 H 1.09002 * 109.47391 * 60.00187 * 1 2 3 31 31 H 1.08999 * 109.46721 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46950 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46969 * 300.00071 * 3 2 1 34 34 H 1.09004 * 109.46890 * 60.00142 * 3 2 1 35 35 H 1.09008 * 109.46851 * 299.99654 * 4 2 1 36 36 H 1.08992 * 109.47526 * 59.99449 * 4 2 1 37 37 H 1.08994 * 109.47058 * 179.97438 * 4 2 1 38 38 H 0.97001 * 120.00151 * 0.02562 * 8 6 5 39 39 H 1.08995 * 109.47231 * 59.99592 * 9 8 6 40 40 H 1.09003 * 109.46577 * 299.99845 * 9 8 6 41 41 H 0.96697 * 114.00129 * 299.99824 * 12 10 9 42 42 H 1.09002 * 109.60504 * 244.53929 * 16 15 13 43 43 H 1.08995 * 109.61010 * 5.04560 * 16 15 13 44 44 H 1.08998 * 109.73743 * 289.84969 * 17 16 15 45 45 H 1.08997 * 109.52935 * 169.30289 * 17 16 15 46 46 H 0.96996 * 119.99959 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.61292 * 295.48815 * 27 18 17 48 48 H 1.09001 * 109.75666 * 175.05663 * 27 18 17 49 49 H 1.08996 * 109.61153 * 354.95885 * 28 15 13 50 50 H 1.09001 * 109.60803 * 115.46149 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9518 -2.5097 0.5035 8 7 2.0681 -2.6657 2.4166 9 6 1.6750 -4.0672 2.5825 10 6 2.2750 -4.6151 3.8789 11 1 1.9811 -3.9781 4.7130 12 8 3.7000 -4.6344 3.7734 13 6 1.7697 -6.0153 4.1139 14 8 2.5275 -6.9575 4.0180 15 7 0.4758 -6.2206 4.4303 16 6 -0.0087 -7.5682 4.7606 17 6 -0.6823 -7.5168 6.1425 18 7 -1.6351 -6.3980 6.1576 19 6 -2.9497 -6.6065 6.4792 20 1 -3.7114 -5.9447 6.0941 21 6 -3.3035 -7.6685 7.3002 22 7 -2.3873 -8.2708 8.0284 23 14 -5.0795 -8.2429 7.3714 24 1 -5.3034 -9.2884 6.3409 25 1 -5.3647 -8.8042 8.7163 26 1 -5.9825 -7.0924 7.1136 27 6 -1.1518 -5.0513 5.8219 28 6 -0.4770 -5.1018 4.4455 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2494 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7207 -1.2495 38 1 2.6277 -2.2368 3.0828 39 1 2.0415 -4.6499 1.7374 40 1 0.5882 -4.1367 2.6278 41 1 4.0335 -5.1831 3.0504 42 1 -0.7306 -7.8913 4.0106 43 1 0.8310 -8.2626 4.7869 44 1 0.0722 -7.3651 6.9144 45 1 -1.2126 -8.4515 6.3244 46 1 -2.6345 -9.0126 8.6024 47 1 -0.4307 -4.7241 6.5710 48 1 -1.9903 -4.3555 5.7929 49 1 0.0533 -4.1671 4.2635 50 1 -1.2315 -5.2534 3.6736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001618029721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:30 Heat of formation + Delta-G solvation = -131.562877 kcal Electronic energy + Delta-G solvation = -31557.831022 eV Core-core repulsion = 27200.593285 eV Total energy + Delta-G solvation = -4357.237737 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.04513 -40.22785 -37.94105 -37.24642 -36.38348 -34.83934 -34.25289 -33.84230 -31.31779 -30.96129 -29.24749 -27.71828 -27.65571 -27.06143 -24.83850 -23.53858 -22.85365 -22.22896 -20.89420 -20.26618 -19.11945 -18.49364 -17.83993 -17.01643 -16.75530 -16.57713 -16.18606 -15.83642 -15.21867 -14.99031 -14.87274 -14.74905 -14.45203 -14.32541 -13.83085 -13.71860 -13.65155 -13.53381 -13.27043 -12.99277 -12.80747 -12.55851 -12.42386 -12.20745 -12.19090 -11.96146 -11.86731 -11.66250 -11.60495 -11.28013 -10.98755 -10.86585 -10.81385 -10.63676 -10.61357 -10.32260 -10.30598 -10.01847 -9.94451 -9.47624 -9.39400 -8.67107 -8.39566 -6.81182 -5.89987 -3.35465 1.83651 2.62465 2.66173 3.18205 3.31793 3.39098 3.40043 3.81411 4.12406 4.28656 4.39146 4.41037 4.45661 4.56353 4.60041 4.70813 5.05495 5.15884 5.20532 5.23795 5.26851 5.34660 5.38376 5.43378 5.48921 5.56561 5.60812 5.63536 5.67801 5.76817 5.85034 6.00611 6.02222 6.11856 6.22843 6.26754 6.28192 6.38156 6.57623 6.71719 7.14998 7.16738 7.26613 7.49973 7.65900 7.70216 8.14988 8.27586 8.29613 9.05873 9.68350 10.23192 11.17190 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.002515 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.263244 B =11130.051528 C =12462.512455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.364 6.364 6 C 0.651 3.349 7 O -0.566 6.566 8 N -0.704 5.704 9 C 0.105 3.895 10 C 0.082 3.918 11 H 0.132 0.868 12 O -0.535 6.535 13 C 0.486 3.514 14 O -0.542 6.542 15 N -0.588 5.588 16 C 0.085 3.915 17 C 0.156 3.844 18 N -0.591 5.591 19 C -0.257 4.257 20 H 0.069 0.931 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.130 3.870 28 C 0.079 3.921 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.411 0.589 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.385 0.615 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.024 0.976 45 H 0.106 0.894 46 H 0.256 0.744 47 H 0.025 0.975 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.432 16.401 -14.955 24.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.404 3.596 7 O -0.455 6.455 8 N -0.364 5.364 9 C -0.019 4.019 10 C 0.019 3.981 11 H 0.150 0.850 12 O -0.340 6.340 13 C 0.271 3.729 14 O -0.421 6.421 15 N -0.321 5.321 16 C -0.038 4.038 17 C 0.030 3.970 18 N -0.313 5.313 19 C -0.386 4.386 20 H 0.087 0.913 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.204 1.204 27 C 0.003 3.997 28 C -0.045 4.045 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.247 0.753 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.235 0.765 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.042 0.958 45 H 0.124 0.876 46 H 0.066 0.934 47 H 0.043 0.957 48 H 0.087 0.913 49 H 0.092 0.908 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.379 15.956 -14.822 23.712 hybrid contribution -0.752 -0.466 -0.055 0.886 sum 8.628 15.490 -14.876 23.145 Atomic orbital electron populations 1.22527 0.93840 1.05235 1.02576 1.22084 0.94481 0.91474 0.82005 1.21865 1.02235 0.92519 1.03180 1.22521 1.01526 1.03576 0.96484 1.86302 1.71525 1.23516 1.46544 1.18028 0.78871 0.80567 0.82138 1.90923 1.40991 1.70447 1.43167 1.44535 1.55761 1.11982 1.24138 1.22181 1.01847 0.80047 0.97804 1.22064 0.82958 0.94776 0.98296 0.85021 1.86585 1.17407 1.72091 1.57916 1.20956 0.82624 0.91106 0.78198 1.90692 1.55471 1.43224 1.52670 1.48154 1.07528 1.10663 1.65781 1.22701 0.98711 0.81821 1.00603 1.21362 0.91444 0.94622 0.89615 1.44012 1.06694 1.00753 1.79872 1.19221 0.82649 1.12885 1.23883 0.91294 1.25067 0.97741 1.00730 0.96078 1.69994 1.32583 1.24913 1.27112 0.86226 0.84316 0.78819 0.77004 1.21317 1.21695 1.20387 1.21275 0.97022 0.89630 0.91815 1.22634 0.92356 0.87843 1.01697 0.92028 0.91135 0.89269 0.91479 0.90126 0.91391 0.89340 0.91129 0.92190 0.75310 0.90104 0.88686 0.76530 0.91823 0.90017 0.95784 0.87599 0.93363 0.95745 0.91288 0.90788 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 8.37 37.16 0.31 -1.32 16 2 C 0.14 1.19 1.13 -90.61 -0.10 1.09 16 3 C -0.14 -0.87 8.85 37.16 0.33 -0.54 16 4 C -0.18 -1.58 8.37 37.16 0.31 -1.27 16 5 O -0.36 -3.83 9.94 -40.32 -0.40 -4.23 16 6 C 0.65 7.58 8.06 54.06 0.44 8.01 16 7 O -0.57 -7.86 11.88 -19.28 -0.23 -8.09 16 8 N -0.70 -6.87 5.51 -65.28 -0.36 -7.23 16 9 C 0.10 1.10 4.85 -4.04 -0.02 1.08 16 10 C 0.08 0.95 2.57 -27.88 -0.07 0.88 16 11 H 0.13 1.38 7.46 -51.93 -0.39 0.99 16 12 O -0.53 -6.20 12.98 -54.97 -0.71 -6.91 16 13 C 0.49 7.68 7.07 -10.99 -0.08 7.60 16 14 O -0.54 -10.29 15.73 -14.19 -0.22 -10.51 16 15 N -0.59 -9.83 2.94 -172.21 -0.51 -10.34 16 16 C 0.08 1.63 6.61 -3.36 -0.02 1.61 16 17 C 0.16 3.58 5.54 -3.37 -0.02 3.56 16 18 N -0.59 -13.83 2.97 -171.77 -0.51 -14.34 16 19 C -0.26 -6.64 9.60 -15.06 -0.14 -6.79 16 20 H 0.07 1.74 7.88 -52.48 -0.41 1.32 16 21 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 22 N -0.90 -25.21 11.03 55.49 0.61 -24.60 16 23 Si 0.91 20.91 29.59 -169.99 -5.03 15.88 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 27 C 0.13 2.42 6.67 -3.60 -0.02 2.39 16 28 C 0.08 1.18 5.31 -3.60 -0.02 1.16 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.97 5.88 -51.92 -0.31 0.67 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.41 3.36 8.58 -40.82 -0.35 3.01 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.10 1.06 5.54 -51.93 -0.29 0.77 16 41 H 0.39 3.75 8.74 45.56 0.40 4.14 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.08 1.58 7.02 -51.93 -0.36 1.21 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.11 2.71 5.84 -51.93 -0.30 2.41 16 46 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 1.21 7.94 -51.93 -0.41 0.80 16 49 H 0.07 0.85 4.53 -51.93 -0.24 0.62 16 50 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 393.15 15.07 5.92 5.92 Total: -1.00 -32.10 393.15 -7.81 -39.91 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.18 Total: 7.07 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 0.80 Total: 17.47 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.76 Total: -56.51 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.57 Total: -29.74 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.10 -7.81 -39.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618029721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.654 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds