Wall clock time and date at job start Wed Apr 1 2020 01:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46854 * 2 1 4 4 C 1.53002 * 109.47176 * 240.00584 * 2 1 3 5 5 O 1.45193 * 109.47150 * 119.99921 * 2 1 3 6 6 C 1.34639 * 116.99820 * 60.00383 * 5 2 1 7 7 O 1.21506 * 120.00350 * 0.02562 * 6 5 2 8 8 N 1.34779 * 119.99925 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00243 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47342 * 180.02562 * 9 8 6 11 11 H 1.08996 * 109.47049 * 54.89103 * 10 9 8 12 12 O 1.42900 * 109.46745 * 294.89226 * 10 9 8 13 13 C 1.50701 * 109.47122 * 174.89083 * 10 9 8 14 14 O 1.21285 * 119.99428 * 110.77298 * 13 10 9 15 15 N 1.34772 * 120.00067 * 290.77831 * 13 10 9 16 16 C 1.46966 * 120.59176 * 184.60687 * 15 13 10 17 17 C 1.53817 * 108.40014 * 124.75484 * 16 15 13 18 18 N 1.46959 * 108.57758 * 49.63510 * 17 16 15 19 19 C 1.36935 * 120.59409 * 124.66959 * 18 17 16 20 20 H 1.08003 * 120.00019 * 206.76450 * 19 18 17 21 21 C 1.38811 * 120.00152 * 26.76880 * 19 18 17 22 22 N 1.31624 * 119.99818 * 16.64140 * 21 19 18 23 23 Si 1.86799 * 120.00491 * 196.64656 * 21 19 18 24 24 H 1.48495 * 109.47138 * 89.99296 * 23 21 19 25 25 H 1.48499 * 109.47355 * 209.99962 * 23 21 19 26 26 H 1.48503 * 109.46746 * 329.99902 * 23 21 19 27 27 C 1.46964 * 118.81513 * 304.64553 * 18 17 16 28 28 C 1.46963 * 120.59531 * 4.87649 * 15 13 10 29 29 H 1.08995 * 109.47101 * 299.99451 * 1 2 3 30 30 H 1.09002 * 109.47391 * 60.00187 * 1 2 3 31 31 H 1.08999 * 109.46721 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46950 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46969 * 300.00071 * 3 2 1 34 34 H 1.09004 * 109.46890 * 60.00142 * 3 2 1 35 35 H 1.09008 * 109.46851 * 299.99654 * 4 2 1 36 36 H 1.08992 * 109.47526 * 59.99449 * 4 2 1 37 37 H 1.08994 * 109.47058 * 179.97438 * 4 2 1 38 38 H 0.97001 * 120.00151 * 0.02562 * 8 6 5 39 39 H 1.08995 * 109.47231 * 59.99592 * 9 8 6 40 40 H 1.09003 * 109.46577 * 299.99845 * 9 8 6 41 41 H 0.96697 * 114.00129 * 299.99824 * 12 10 9 42 42 H 1.09002 * 109.60504 * 244.53929 * 16 15 13 43 43 H 1.08995 * 109.61010 * 5.04560 * 16 15 13 44 44 H 1.08998 * 109.73743 * 289.84969 * 17 16 15 45 45 H 1.08997 * 109.52935 * 169.30289 * 17 16 15 46 46 H 0.96996 * 119.99959 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.61292 * 295.48815 * 27 18 17 48 48 H 1.09001 * 109.75666 * 175.05663 * 27 18 17 49 49 H 1.08996 * 109.61153 * 354.95885 * 28 15 13 50 50 H 1.09001 * 109.60803 * 115.46149 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9518 -2.5097 0.5035 8 7 2.0681 -2.6657 2.4166 9 6 1.6750 -4.0672 2.5825 10 6 2.2750 -4.6151 3.8789 11 1 1.9811 -3.9781 4.7130 12 8 3.7000 -4.6344 3.7734 13 6 1.7697 -6.0153 4.1139 14 8 2.5275 -6.9575 4.0180 15 7 0.4758 -6.2206 4.4303 16 6 -0.0087 -7.5682 4.7606 17 6 -0.6823 -7.5168 6.1425 18 7 -1.6351 -6.3980 6.1576 19 6 -2.9497 -6.6065 6.4792 20 1 -3.7114 -5.9447 6.0941 21 6 -3.3035 -7.6685 7.3002 22 7 -2.3873 -8.2708 8.0284 23 14 -5.0795 -8.2429 7.3714 24 1 -5.3034 -9.2884 6.3409 25 1 -5.3647 -8.8042 8.7163 26 1 -5.9825 -7.0924 7.1136 27 6 -1.1518 -5.0513 5.8219 28 6 -0.4770 -5.1018 4.4455 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2494 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7207 -1.2495 38 1 2.6277 -2.2368 3.0828 39 1 2.0415 -4.6499 1.7374 40 1 0.5882 -4.1367 2.6278 41 1 4.0335 -5.1831 3.0504 42 1 -0.7306 -7.8913 4.0106 43 1 0.8310 -8.2626 4.7869 44 1 0.0722 -7.3651 6.9144 45 1 -1.2126 -8.4515 6.3244 46 1 -2.6345 -9.0126 8.6024 47 1 -0.4307 -4.7241 6.5710 48 1 -1.9903 -4.3555 5.7929 49 1 0.0533 -4.1671 4.2635 50 1 -1.2315 -5.2534 3.6736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001618029721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:29 Heat of formation + Delta-G solvation = -155.668106 kcal Electronic energy + Delta-G solvation = -31558.876303 eV Core-core repulsion = 27200.593285 eV Total energy + Delta-G solvation = -4358.283018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.92627 -41.42112 -39.00494 -38.48046 -37.49299 -35.94143 -35.53820 -34.72943 -33.12266 -32.39101 -30.44539 -28.68301 -28.31652 -28.24838 -26.16032 -25.01223 -24.37202 -23.06789 -22.25710 -21.20216 -20.47438 -19.38547 -19.12390 -18.23636 -17.96629 -17.59477 -17.25472 -16.90949 -16.67522 -16.31689 -15.97129 -15.76675 -15.48379 -15.39158 -15.25188 -15.20138 -15.03655 -14.77064 -14.38003 -14.02048 -13.93974 -13.39160 -13.30742 -13.13028 -13.09847 -13.00203 -12.86605 -12.81884 -12.68413 -12.48453 -12.42290 -12.31326 -12.29049 -12.03303 -11.96739 -11.82128 -11.66978 -11.35372 -11.14714 -10.71538 -10.60810 -10.30242 -9.91660 -8.69282 -7.88621 -5.36573 1.00015 1.43270 1.48770 1.50483 1.58253 1.75609 1.90099 2.50417 2.96762 3.23709 3.26223 3.32315 3.49700 3.57026 3.79455 3.81626 3.85032 3.99314 4.13658 4.18419 4.33263 4.37566 4.50246 4.52788 4.61947 4.65185 4.66199 4.76002 4.80005 4.81260 4.81700 4.89451 4.92818 5.03670 5.04213 5.22019 5.22542 5.32907 5.38842 5.41826 5.58656 5.59897 5.66164 6.29759 6.34461 6.36061 6.49458 6.97317 7.09125 7.32413 7.78797 8.30007 9.16302 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.002515 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.263244 B =11130.051528 C =12462.512455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.366 6.366 6 C 0.648 3.352 7 O -0.591 6.591 8 N -0.692 5.692 9 C 0.115 3.885 10 C 0.100 3.900 11 H 0.152 0.848 12 O -0.538 6.538 13 C 0.484 3.516 14 O -0.575 6.575 15 N -0.593 5.593 16 C 0.100 3.900 17 C 0.166 3.834 18 N -0.609 5.609 19 C -0.259 4.259 20 H 0.076 0.924 21 C -0.052 4.052 22 N -0.937 5.937 23 Si 0.968 3.032 24 H -0.287 1.287 25 H -0.299 1.299 26 H -0.266 1.266 27 C 0.124 3.876 28 C 0.091 3.909 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.421 0.579 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.394 0.606 42 H 0.067 0.933 43 H 0.077 0.923 44 H -0.005 1.005 45 H 0.074 0.926 46 H 0.250 0.750 47 H 0.023 0.977 48 H 0.081 0.919 49 H 0.115 0.885 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.594 19.114 -16.512 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.089 3.911 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.281 6.281 6 C 0.401 3.599 7 O -0.482 6.482 8 N -0.354 5.354 9 C -0.009 4.009 10 C 0.037 3.963 11 H 0.169 0.831 12 O -0.344 6.344 13 C 0.272 3.728 14 O -0.456 6.456 15 N -0.326 5.326 16 C -0.024 4.024 17 C 0.040 3.960 18 N -0.332 5.332 19 C -0.389 4.389 20 H 0.094 0.906 21 C -0.247 4.247 22 N -0.583 5.583 23 Si 0.797 3.203 24 H -0.214 1.214 25 H -0.226 1.226 26 H -0.191 1.191 27 C -0.002 4.002 28 C -0.032 4.032 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.259 0.741 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.245 0.755 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.013 0.987 45 H 0.093 0.907 46 H 0.059 0.941 47 H 0.041 0.959 48 H 0.099 0.901 49 H 0.133 0.867 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.564 18.731 -16.400 26.670 hybrid contribution -0.738 -1.244 0.395 1.499 sum 8.826 17.487 -16.005 25.295 Atomic orbital electron populations 1.22488 0.94005 1.03741 1.03629 1.22413 0.94550 0.92700 0.81433 1.21889 1.02458 0.90639 1.04331 1.22478 1.01659 1.02211 0.97405 1.86317 1.71472 1.22859 1.47415 1.18177 0.78661 0.80929 0.82110 1.90925 1.42131 1.71025 1.44115 1.44380 1.55527 1.11505 1.23940 1.21991 1.01532 0.80406 0.96997 1.21957 0.82941 0.91912 0.99468 0.83099 1.86579 1.17171 1.72135 1.58546 1.21727 0.81672 0.92609 0.76820 1.90679 1.56133 1.44902 1.53859 1.48188 1.08430 1.09977 1.65991 1.22262 0.98257 0.83644 0.98253 1.21044 0.90513 0.93484 0.90993 1.44253 1.06194 1.02728 1.80055 1.19581 0.84036 1.12516 1.22750 0.90590 1.25797 1.01155 1.01380 0.96397 1.70155 1.34321 1.25498 1.28333 0.85250 0.80444 0.78429 0.76213 1.21364 1.22591 1.19059 1.21500 0.97702 0.87368 0.93655 1.22616 0.92406 0.88910 0.99307 0.91827 0.89263 0.91919 0.91145 0.88081 0.91146 0.91998 0.89220 0.91887 0.74135 0.90407 0.88787 0.75512 0.91469 0.90503 0.98661 0.90748 0.94063 0.95934 0.90081 0.86680 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 8.37 71.98 0.60 -2.29 16 2 C 0.13 1.94 1.13 -10.79 -0.01 1.93 16 3 C -0.14 -1.29 8.85 71.98 0.64 -0.65 16 4 C -0.18 -2.81 8.37 71.98 0.60 -2.20 16 5 O -0.37 -7.00 9.94 -55.48 -0.55 -7.56 16 6 C 0.65 13.96 8.06 129.79 1.05 15.00 16 7 O -0.59 -15.81 11.88 19.82 0.24 -15.58 16 8 N -0.69 -11.75 5.51 -590.85 -3.25 -15.01 16 9 C 0.11 2.11 4.85 86.38 0.42 2.52 16 10 C 0.10 2.05 2.57 29.85 0.08 2.12 16 11 H 0.15 2.57 7.46 -2.39 -0.02 2.55 16 12 O -0.54 -11.13 12.98 -130.11 -1.69 -12.82 16 13 C 0.48 14.56 7.07 87.66 0.62 15.18 16 14 O -0.58 -21.44 15.73 15.83 0.25 -21.19 16 15 N -0.59 -19.07 2.94 -817.15 -2.40 -21.47 16 16 C 0.10 3.87 6.61 86.57 0.57 4.45 16 17 C 0.17 7.88 5.54 86.57 0.48 8.36 16 18 N -0.61 -28.56 2.97 -697.35 -2.07 -30.64 16 19 C -0.26 -13.37 9.60 84.03 0.81 -12.56 16 20 H 0.08 3.75 7.88 -2.91 -0.02 3.72 16 21 C -0.05 -2.80 4.95 84.86 0.42 -2.38 16 22 N -0.94 -54.10 11.03 21.65 0.24 -53.86 16 23 Si 0.97 43.45 29.59 68.60 2.03 45.48 16 24 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 25 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 27 C 0.12 4.41 6.67 86.42 0.58 4.99 16 28 C 0.09 2.49 5.31 86.42 0.46 2.95 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 1.32 5.88 -2.38 -0.01 1.31 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 38 H 0.42 5.60 8.58 -92.71 -0.80 4.80 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.09 1.81 5.54 -2.39 -0.01 1.79 16 41 H 0.39 6.86 8.74 -74.06 -0.65 6.21 16 42 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.08 3.04 7.02 -2.39 -0.02 3.02 16 44 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 45 H 0.07 4.00 5.84 -2.39 -0.01 3.98 16 46 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 47 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.08 2.68 7.94 -2.39 -0.02 2.66 16 49 H 0.12 2.22 4.53 -2.39 -0.01 2.21 16 50 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -71.18 393.15 -0.38 -71.56 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: -0.47 Total: 23.65 kcal Atomic # 6 Polarization: 30.12 SS G_CDS: 7.30 Total: 37.43 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -7.49 Total: -120.97 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -1.75 Total: -57.14 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.18 -0.38 -71.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618029721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.108 kcal (2) G-P(sol) polarization free energy of solvation -71.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds