Wall clock time and date at job start Wed Apr 1 2020 02:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45205 * 109.46545 * 2 1 4 4 C 1.34231 * 116.99635 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99860 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00078 * 179.97438 * 4 3 2 7 7 O 1.42897 * 109.47127 * 180.02562 * 6 4 3 8 8 C 1.42902 * 114.00035 * 180.02562 * 7 6 4 9 9 C 1.52996 * 109.47450 * 180.02562 * 8 7 6 10 10 N 1.46505 * 109.47308 * 64.99073 * 9 8 7 11 11 C 1.34773 * 120.00225 * 179.97438 * 10 9 8 12 12 O 1.21587 * 119.99684 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00300 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00360 * 180.02562 * 13 11 10 15 15 C 1.53071 * 109.44009 * 84.79625 * 14 13 11 16 16 C 1.53201 * 109.29371 * 181.23934 * 15 14 13 17 17 N 1.46928 * 108.89275 * 305.57634 * 16 15 14 18 18 C 1.36934 * 120.63265 * 233.51651 * 17 16 15 19 19 H 1.07997 * 119.99862 * 151.82898 * 18 17 16 20 20 C 1.38806 * 120.00015 * 331.83027 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08772 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.08448 * 20 18 17 23 23 H 1.48503 * 109.47142 * 60.00161 * 22 20 18 24 24 H 1.48498 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47267 * 300.00095 * 22 20 18 26 26 C 1.46932 * 118.73342 * 53.53882 * 17 16 15 27 27 C 1.53045 * 109.46092 * 205.00269 * 14 13 11 28 28 H 1.09000 * 109.47504 * 60.00216 * 1 2 3 29 29 H 1.09002 * 109.47074 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47549 * 299.99611 * 1 2 3 31 31 H 1.08994 * 109.46903 * 240.00359 * 2 1 3 32 32 H 1.08995 * 109.47144 * 120.00068 * 2 1 3 33 33 H 1.09003 * 109.46657 * 60.00572 * 6 4 3 34 34 H 1.08999 * 109.47002 * 300.00257 * 6 4 3 35 35 H 1.08993 * 109.47461 * 59.99604 * 8 7 6 36 36 H 1.09002 * 109.46679 * 299.99699 * 8 7 6 37 37 H 1.09000 * 109.46942 * 304.99807 * 9 8 7 38 38 H 1.08997 * 109.47369 * 184.99200 * 9 8 7 39 39 H 0.97005 * 119.99867 * 0.02562 * 10 9 8 40 40 H 0.97005 * 119.99791 * 0.02562 * 13 11 10 41 41 H 1.08998 * 109.45866 * 324.97703 * 14 13 11 42 42 H 1.09002 * 109.39343 * 61.36176 * 15 14 13 43 43 H 1.09003 * 109.62467 * 301.25403 * 15 14 13 44 44 H 1.09000 * 109.58250 * 185.72113 * 16 15 14 45 45 H 1.08995 * 109.58477 * 65.43833 * 16 15 14 46 46 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 47 47 H 1.08996 * 109.59017 * 66.18099 * 26 17 16 48 48 H 1.09009 * 109.58200 * 186.46074 * 26 17 16 49 49 H 1.09002 * 109.49555 * 58.67538 * 27 14 13 50 50 H 1.08992 * 109.52043 * 298.59539 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9206 2.9376 -0.0012 7 8 5.3476 2.8628 -0.0023 8 6 5.9964 4.1361 -0.0023 9 6 7.5131 3.9357 -0.0042 10 7 7.9194 3.2935 -1.2567 11 6 9.2192 3.0174 -1.4818 12 8 10.0546 3.3008 -0.6450 13 7 9.5930 2.4271 -2.6342 14 6 11.0058 2.1264 -2.8786 15 6 11.3581 0.7804 -2.2403 16 6 12.8433 0.4839 -2.4712 17 7 13.1264 0.5647 -3.9107 18 6 13.7343 -0.4754 -4.5616 19 1 13.5466 -0.6382 -5.6126 20 6 14.5918 -1.3204 -3.8706 21 7 15.0838 -0.9508 -2.7071 22 14 15.0474 -2.9822 -4.5919 23 1 15.7166 -2.7861 -5.9031 24 1 15.9691 -3.6879 -3.6659 25 1 13.8182 -3.7940 -4.7801 26 6 12.7451 1.7829 -4.6383 27 6 11.2603 2.0635 -4.3865 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5850 3.4699 0.8889 34 1 3.5843 3.4694 -0.8911 35 1 5.7041 4.6928 0.8879 36 1 5.7028 4.6933 -0.8920 37 1 7.7971 3.3034 0.8370 38 1 8.0075 4.9030 0.0852 39 1 7.2529 3.0677 -1.9244 40 1 8.9266 2.2013 -3.3019 41 1 11.6249 2.9079 -2.4382 42 1 10.7551 -0.0051 -2.6959 43 1 11.1570 0.8192 -1.1697 44 1 13.0767 -0.5171 -2.1085 45 1 13.4493 1.2163 -1.9379 46 1 15.6832 -1.5411 -2.2244 47 1 13.3413 2.6230 -4.2821 48 1 12.9163 1.6398 -5.7053 49 1 10.9877 3.0157 -4.8415 50 1 10.6600 1.2660 -4.8242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635381913.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:37 Heat of formation + Delta-G solvation = -167.322940 kcal Electronic energy + Delta-G solvation = -29735.056886 eV Core-core repulsion = 25376.268476 eV Total energy + Delta-G solvation = -4358.788410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.56571 -41.16967 -39.35608 -38.88393 -37.62085 -36.09504 -35.61711 -33.89321 -32.79757 -31.88306 -31.45174 -30.42896 -28.73198 -26.82025 -24.26464 -24.09308 -23.88767 -23.16938 -22.24323 -21.83713 -21.06194 -19.43262 -18.91608 -18.62659 -18.04617 -17.86813 -17.63421 -17.18925 -16.90474 -16.56358 -16.26741 -15.82478 -15.52494 -15.35488 -15.25586 -15.07006 -14.74631 -14.70258 -14.48626 -14.00902 -13.93188 -13.66578 -13.56083 -13.21611 -13.13616 -12.99936 -12.85823 -12.64133 -12.56415 -12.54382 -12.34620 -12.12024 -12.07505 -11.85767 -11.58126 -11.53223 -11.49538 -11.44017 -11.20334 -10.75850 -10.57228 -10.28998 -9.70370 -8.70775 -7.86763 -5.33372 1.09149 1.28337 1.46759 1.50282 1.56732 1.74727 2.21400 2.51865 2.85107 3.27199 3.36678 3.62599 3.67939 3.89223 3.96220 3.96998 4.05327 4.10604 4.20893 4.22707 4.28814 4.32937 4.35829 4.48142 4.51803 4.64619 4.67700 4.80711 4.81806 4.84154 4.91425 4.92599 5.06301 5.09453 5.13094 5.14151 5.32692 5.40739 5.45702 5.52516 5.62867 5.64290 5.69436 5.98778 6.06447 6.38988 6.68910 7.13315 7.16252 7.64726 7.84736 8.38002 9.20234 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012736 B = 0.001869 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.016402 B =14977.621450 C =16440.318219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 O -0.355 6.355 4 C 0.456 3.544 5 O -0.536 6.536 6 C 0.073 3.927 7 O -0.401 6.401 8 C 0.060 3.940 9 C 0.136 3.864 10 N -0.730 5.730 11 C 0.696 3.304 12 O -0.640 6.640 13 N -0.727 5.727 14 C 0.181 3.819 15 C -0.131 4.131 16 C 0.184 3.816 17 N -0.609 5.609 18 C -0.263 4.263 19 H 0.075 0.925 20 C -0.056 4.056 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.271 1.271 24 H -0.298 1.298 25 H -0.278 1.278 26 C 0.141 3.859 27 C -0.120 4.120 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.411 0.589 40 H 0.409 0.591 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.040 0.960 44 H 0.053 0.947 45 H -0.010 1.010 46 H 0.249 0.751 47 H 0.013 0.987 48 H 0.070 0.930 49 H 0.093 0.907 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.202 12.511 2.986 36.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.273 6.273 4 C 0.300 3.700 5 O -0.425 6.425 6 C -0.003 4.003 7 O -0.321 6.321 8 C -0.016 4.016 9 C 0.011 3.989 10 N -0.387 5.387 11 C 0.396 3.604 12 O -0.522 6.522 13 N -0.382 5.382 14 C 0.076 3.924 15 C -0.172 4.172 16 C 0.057 3.943 17 N -0.332 5.332 18 C -0.393 4.393 19 H 0.092 0.908 20 C -0.251 4.251 21 N -0.585 5.585 22 Si 0.798 3.202 23 H -0.196 1.196 24 H -0.224 1.224 25 H -0.204 1.204 26 C 0.015 3.985 27 C -0.159 4.159 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.120 0.880 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.247 0.753 40 H 0.246 0.754 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.008 0.992 46 H 0.058 0.942 47 H 0.031 0.969 48 H 0.088 0.912 49 H 0.112 0.888 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -33.063 12.219 3.834 35.457 hybrid contribution 0.353 -1.437 -0.296 1.509 sum -32.710 10.781 3.538 34.622 Atomic orbital electron populations 1.21822 0.90021 1.04360 1.04010 1.23280 0.97221 0.79081 1.02367 1.86456 1.23246 1.33693 1.83873 1.24060 0.80902 0.93186 0.71885 1.90736 1.61338 1.44646 1.45770 1.21936 0.81907 0.89141 1.07336 1.87997 1.17231 1.30862 1.96046 1.22972 0.89611 0.84354 1.04639 1.21343 0.93932 0.98254 0.85326 1.44913 1.05496 1.66071 1.22173 1.16221 0.83351 0.78446 0.82367 1.90901 1.52443 1.61493 1.47384 1.45110 1.09395 1.64522 1.19125 1.20501 0.80341 0.95205 0.96376 1.22338 0.98355 0.97698 0.98803 1.20444 0.90347 0.99050 0.84465 1.44328 1.68873 1.14858 1.05167 1.19546 1.19304 1.05068 0.95350 0.90780 1.25899 0.97262 1.03580 0.98316 1.70207 1.34116 1.36856 1.17294 0.85298 0.77471 0.79857 0.77566 1.19622 1.22392 1.20410 1.21060 0.93018 0.87877 0.96516 1.22127 0.97971 1.02780 0.93026 0.90884 0.88560 0.90924 0.91653 0.91731 0.85581 0.85285 0.88009 0.88960 0.93443 0.89096 0.75321 0.75438 0.92524 0.92495 0.94147 0.92855 0.99196 0.94202 0.96881 0.91205 0.88811 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 71.98 0.74 -0.12 16 2 C 0.05 0.67 6.19 71.98 0.45 1.11 16 3 O -0.36 -4.99 10.22 -51.42 -0.53 -5.51 16 4 C 0.46 7.86 8.03 71.24 0.57 8.43 16 5 O -0.54 -14.79 16.25 28.40 0.46 -14.32 16 6 C 0.07 0.62 6.53 71.24 0.47 1.09 16 7 O -0.40 -6.12 9.82 -129.90 -1.28 -7.40 16 8 C 0.06 0.52 6.07 71.98 0.44 0.96 16 9 C 0.14 2.44 6.06 86.38 0.52 2.97 16 10 N -0.73 -15.83 5.51 -478.54 -2.64 -18.46 16 11 C 0.70 22.08 8.53 179.06 1.53 23.60 16 12 O -0.64 -26.95 16.01 -3.99 -0.06 -27.01 16 13 N -0.73 -20.96 5.08 -457.64 -2.33 -23.28 16 14 C 0.18 6.59 2.41 45.03 0.11 6.70 16 15 C -0.13 -5.74 5.66 30.69 0.17 -5.57 16 16 C 0.18 9.76 5.30 86.37 0.46 10.22 16 17 N -0.61 -31.70 3.00 -699.07 -2.09 -33.79 16 18 C -0.26 -14.74 9.58 84.03 0.81 -13.94 16 19 H 0.07 3.95 7.88 -2.91 -0.02 3.92 16 20 C -0.06 -3.21 4.92 84.86 0.42 -2.79 16 21 N -0.94 -58.33 11.20 21.65 0.24 -58.09 16 22 Si 0.97 46.15 29.59 68.60 2.03 48.17 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 C 0.14 5.84 6.52 86.36 0.56 6.40 16 27 C -0.12 -3.83 5.55 30.67 0.17 -3.66 16 28 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 32 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 33 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.41 6.53 8.49 -92.70 -0.79 5.74 16 40 H 0.41 8.72 8.62 -92.70 -0.80 7.92 16 41 H 0.06 2.38 7.58 -2.39 -0.02 2.36 16 42 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.05 3.18 6.06 -2.39 -0.01 3.17 16 45 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 46 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 47 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.07 2.70 7.93 -2.38 -0.02 2.69 16 49 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 50 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -86.95 412.88 0.58 -86.38 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.64 Total: 17.93 kcal Atomic # 6 Polarization: 27.98 SS G_CDS: 7.41 Total: 35.39 kcal Atomic # 7 Polarization: -126.81 SS G_CDS: -6.81 Total: -133.63 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -1.40 Total: -54.25 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -86.95 0.58 -86.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635381913.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.948 kcal (2) G-P(sol) polarization free energy of solvation -86.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds