Wall clock time and date at job start Wed Apr 1 2020 01:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47328 * 2 1 4 4 C 1.52997 * 109.46981 * 239.99707 * 2 1 3 5 5 O 1.45200 * 109.46850 * 120.00237 * 2 1 3 6 6 C 1.34640 * 117.00142 * 59.99743 * 5 2 1 7 7 O 1.21508 * 119.99995 * 359.97438 * 6 5 2 8 8 N 1.34782 * 119.99884 * 180.02562 * 6 5 2 9 9 C 1.46499 * 119.99959 * 180.02562 * 8 6 5 10 10 H 1.09009 * 109.46700 * 324.99476 * 9 8 6 11 11 C 1.52996 * 109.46879 * 204.99907 * 9 8 6 12 12 C 1.52998 * 109.47598 * 64.99915 * 11 9 8 13 13 C 1.50693 * 109.47472 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00322 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00219 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99779 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99919 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47412 * 90.00514 * 17 15 13 19 19 H 1.48505 * 109.46889 * 209.99974 * 17 15 13 20 20 H 1.48499 * 109.47263 * 330.00022 * 17 15 13 21 21 C 1.50700 * 109.47257 * 84.99581 * 9 8 6 22 22 O 1.21283 * 119.99803 * 359.97438 * 21 9 8 23 23 N 1.34777 * 119.99675 * 180.27849 * 21 9 8 24 24 C 1.47102 * 120.84164 * 179.45087 * 23 21 9 25 25 C 1.52971 * 108.45785 * 230.52180 * 24 23 21 26 26 O 1.43157 * 108.76607 * 310.87421 * 25 24 23 27 27 C 1.42980 * 113.78021 * 58.57112 * 26 25 24 28 28 N 1.37117 * 120.84665 * 359.71961 * 23 21 9 29 29 H 1.09000 * 109.46786 * 300.00281 * 1 2 3 30 30 H 1.09000 * 109.46971 * 59.99740 * 1 2 3 31 31 H 1.08992 * 109.47494 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46946 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.46931 * 299.99700 * 3 2 1 34 34 H 1.08997 * 109.46689 * 60.00156 * 3 2 1 35 35 H 1.08999 * 109.47561 * 300.00271 * 4 2 1 36 36 H 1.09000 * 109.46817 * 60.00458 * 4 2 1 37 37 H 1.09000 * 109.47270 * 180.02562 * 4 2 1 38 38 H 0.97001 * 119.99601 * 359.97438 * 8 6 5 39 39 H 1.09000 * 109.46996 * 185.00003 * 11 9 8 40 40 H 1.08996 * 109.47385 * 304.99212 * 11 9 8 41 41 H 1.09000 * 109.47019 * 300.00074 * 12 11 9 42 42 H 1.08997 * 109.46862 * 59.99520 * 12 11 9 43 43 H 0.96999 * 119.99816 * 179.97438 * 16 15 13 44 44 H 1.09003 * 109.71280 * 350.25931 * 24 23 21 45 45 H 1.08996 * 109.71575 * 110.89740 * 24 23 21 46 46 H 1.09005 * 109.68049 * 191.02449 * 25 24 23 47 47 H 1.08994 * 109.57578 * 70.67202 * 25 24 23 48 48 H 1.09004 * 109.47051 * 179.03764 * 27 26 25 49 49 H 1.09003 * 109.47382 * 59.04384 * 27 26 25 50 50 H 1.00898 * 111.00290 * 250.23480 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6521 -1.9724 1.3383 7 8 0.9507 -2.5094 0.5040 8 7 2.0671 -2.6655 2.4172 9 6 1.6738 -4.0670 2.5832 10 1 0.6649 -4.2095 2.1957 11 6 1.7063 -4.4333 4.0683 12 6 0.6453 -3.6238 4.8166 13 6 0.6769 -3.9851 6.2793 14 1 1.3834 -4.7184 6.6393 15 6 -0.1954 -3.3787 7.1582 16 7 -1.0554 -2.4854 6.7199 17 14 -0.1557 -3.8261 8.9714 18 1 0.7916 -2.9299 9.6818 19 1 -1.5143 -3.6686 9.5499 20 1 0.2870 -5.2353 9.1240 21 6 2.6320 -4.9505 1.8267 22 8 3.5525 -4.4580 1.2093 23 7 2.4624 -6.2876 1.8312 24 6 3.3795 -7.1666 1.0895 25 6 2.5476 -8.1128 0.2218 26 8 1.5240 -8.7003 1.0320 27 6 0.6506 -7.7453 1.6399 28 7 1.4275 -6.8627 2.5229 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 2.6267 -2.2366 3.0834 39 1 1.5005 -5.4973 4.1846 40 1 2.6911 -4.2070 4.4769 41 1 0.8511 -2.5598 4.7003 42 1 -0.3395 -3.8502 4.4080 43 1 -1.6693 -2.0591 7.3382 44 1 4.0318 -6.5662 0.4553 45 1 3.9796 -7.7471 1.7901 46 1 3.1873 -8.8964 -0.1842 47 1 2.0916 -7.5533 -0.5949 48 1 -0.1081 -8.2667 2.2236 49 1 0.1673 -7.1501 0.8650 50 1 1.7667 -7.3655 3.3292 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645822369.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:59 Heat of formation + Delta-G solvation = -128.763880 kcal Electronic energy + Delta-G solvation = -32380.761026 eV Core-core repulsion = 28023.644663 eV Total energy + Delta-G solvation = -4357.116364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.85867 -40.29425 -38.69444 -37.00970 -35.58800 -35.16899 -33.91948 -33.01518 -32.37635 -31.01804 -28.95648 -27.34005 -27.25610 -27.07474 -25.33997 -24.14566 -22.89470 -21.85179 -20.48718 -19.94504 -19.75057 -17.96742 -17.45648 -17.29425 -16.75922 -16.34084 -16.11200 -16.02385 -15.67307 -15.32063 -15.08393 -14.80526 -14.54037 -14.30255 -14.18842 -13.84403 -13.75634 -13.29960 -12.95479 -12.73486 -12.42317 -12.24447 -12.10148 -11.89792 -11.80731 -11.77558 -11.64790 -11.51660 -11.34953 -11.15245 -10.96753 -10.79877 -10.66836 -10.55354 -10.33090 -10.15777 -9.95945 -9.74673 -9.55906 -9.35249 -9.13515 -8.89391 -8.60577 -8.35115 -6.01244 -4.04217 2.28014 2.62451 2.72062 3.25480 3.30774 3.37848 3.39796 3.56120 3.97748 4.43778 4.48304 4.61864 4.72880 4.80579 4.82104 4.86513 5.00586 5.07451 5.24691 5.31443 5.34904 5.44279 5.50003 5.51021 5.53617 5.60240 5.73159 5.74524 5.77210 5.85139 5.96816 6.04035 6.22315 6.26386 6.40786 6.47459 6.55110 6.59903 6.69866 6.84995 6.88826 6.96813 7.63803 7.65253 7.76929 7.82296 7.97623 8.27540 8.37640 8.76726 9.02445 9.59993 11.09644 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.006165 B = 0.004914 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4540.443570 B = 5696.661718 C = 9464.168848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.181 4.181 5 O -0.363 6.363 6 C 0.661 3.339 7 O -0.576 6.576 8 N -0.681 5.681 9 C 0.165 3.835 10 H 0.119 0.881 11 C -0.112 4.112 12 C 0.027 3.973 13 C -0.521 4.521 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.538 3.462 22 O -0.533 6.533 23 N -0.468 5.468 24 C 0.051 3.949 25 C 0.048 3.952 26 O -0.409 6.409 27 C 0.201 3.799 28 N -0.445 5.445 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.411 0.589 39 H 0.090 0.910 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.020 0.980 43 H 0.260 0.740 44 H 0.107 0.893 45 H 0.076 0.924 46 H 0.105 0.895 47 H 0.059 0.941 48 H 0.127 0.873 49 H 0.078 0.922 50 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.120 -3.868 -14.465 16.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.238 4.238 5 O -0.278 6.278 6 C 0.414 3.586 7 O -0.466 6.466 8 N -0.339 5.339 9 C 0.058 3.942 10 H 0.136 0.864 11 C -0.150 4.150 12 C -0.010 4.010 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C 0.327 3.673 22 O -0.406 6.406 23 N -0.295 5.295 24 C -0.074 4.074 25 C -0.030 4.030 26 O -0.323 6.323 27 C 0.035 3.965 28 N -0.181 5.181 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.246 0.754 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.125 0.875 45 H 0.094 0.906 46 H 0.123 0.877 47 H 0.078 0.922 48 H 0.145 0.855 49 H 0.096 0.904 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.708 -3.314 -15.299 16.662 hybrid contribution 0.699 -0.613 1.225 1.538 sum 6.407 -3.928 -14.074 15.955 Atomic orbital electron populations 1.22517 0.94027 1.05252 1.02288 1.21986 0.94386 0.91369 0.82289 1.21846 1.02090 0.92833 1.02956 1.22492 1.01429 1.03555 0.96349 1.86298 1.71486 1.23928 1.46100 1.17942 0.78412 0.80211 0.81994 1.90835 1.41736 1.70620 1.43431 1.44378 1.55154 1.11105 1.23217 1.20872 0.97503 0.77174 0.98652 0.86351 1.22041 1.01892 1.03063 0.87984 1.19072 0.92841 0.94907 0.94170 1.21171 1.18518 1.23368 0.92849 0.92674 1.24995 0.95467 0.95103 0.98677 1.69968 1.21096 1.27166 1.34862 0.86633 0.77219 0.78794 0.85541 1.20773 1.21312 1.19901 1.21465 0.85562 0.80466 0.79832 1.90673 1.33464 1.72388 1.44092 1.47434 1.26239 1.05537 1.50311 1.22581 0.93619 0.93877 0.97277 1.22944 0.90179 0.97108 0.92772 1.88117 1.43982 1.34665 1.65561 1.24093 0.90947 0.87433 0.93996 1.62187 1.13117 1.36908 1.05849 0.91920 0.91558 0.89240 0.91632 0.90445 0.91355 0.89375 0.91567 0.92358 0.75375 0.89228 0.92770 0.96307 0.96160 0.93004 0.87521 0.90568 0.87672 0.92224 0.85491 0.90362 0.82076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 8.37 37.16 0.31 -2.23 16 2 C 0.14 1.91 1.13 -90.62 -0.10 1.81 16 3 C -0.14 -1.50 8.85 37.16 0.33 -1.17 16 4 C -0.18 -2.42 8.37 37.16 0.31 -2.11 16 5 O -0.36 -6.21 9.94 -40.32 -0.40 -6.61 16 6 C 0.66 12.42 7.89 54.06 0.43 12.84 16 7 O -0.58 -11.49 11.54 -19.28 -0.22 -11.71 16 8 N -0.68 -12.37 4.06 -59.86 -0.24 -12.62 16 9 C 0.17 2.93 1.95 -69.08 -0.13 2.80 16 10 H 0.12 2.25 7.58 -51.92 -0.39 1.86 16 11 C -0.11 -2.07 4.58 -26.73 -0.12 -2.19 16 12 C 0.03 0.65 4.86 -27.89 -0.14 0.51 16 13 C -0.52 -13.77 9.11 -34.44 -0.31 -14.08 16 14 H 0.06 1.40 7.74 -52.49 -0.41 1.00 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 17 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 21 C 0.54 9.10 7.17 -10.98 -0.08 9.02 16 22 O -0.53 -10.26 15.78 5.55 0.09 -10.17 16 23 N -0.47 -6.42 3.27 -59.89 -0.20 -6.61 16 24 C 0.05 0.57 6.74 -3.73 -0.03 0.55 16 25 C 0.05 0.46 7.09 37.14 0.26 0.73 16 26 O -0.41 -4.50 10.88 -35.23 -0.38 -4.89 16 27 C 0.20 2.12 7.71 60.15 0.46 2.59 16 28 N -0.44 -5.43 4.70 -14.46 -0.07 -5.50 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.46 5.88 -51.93 -0.31 1.16 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.42 5.88 -51.93 -0.31 1.11 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.41 7.06 8.71 -40.82 -0.36 6.70 16 39 H 0.09 1.54 5.67 -51.93 -0.29 1.25 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.02 0.48 7.75 -51.93 -0.40 0.08 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.11 1.28 7.07 -51.93 -0.37 0.92 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.36 3.91 8.61 -181.01 -1.56 2.35 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -33.09 400.79 -8.02 -41.11 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -9.44 Total: 9.73 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 1.09 Total: 10.59 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.23 Total: -49.96 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.92 Total: -33.38 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.09 -8.02 -41.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645822369.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.654 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds