Wall clock time and date at job start Wed Apr 1 2020 02:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.37560 * 127.16744 * 2 1 4 4 C 1.47887 * 126.46754 * 0.02562 * 3 2 1 5 5 N 1.31676 * 125.67732 * 359.69006 * 4 3 2 6 6 N 1.40434 * 106.68913 * 179.89466 * 5 4 3 7 7 H 0.97004 * 126.72454 * 180.14200 * 6 5 4 8 8 C 1.34546 * 106.54770 * 0.36884 * 6 5 4 9 9 C 1.50706 * 125.82784 * 179.73718 * 8 6 5 10 10 C 1.52997 * 117.49907 * 343.64445 * 9 8 6 11 11 C 1.52997 * 117.49834 * 275.01997 * 9 8 6 12 12 N 1.30636 * 108.34535 * 359.77678 * 8 6 5 13 13 N 1.31238 * 107.06234 * 180.02562 * 3 2 1 14 14 N 1.28521 * 109.93339 * 359.72574 * 13 3 2 15 15 C 1.31367 * 110.08001 * 0.45285 * 14 13 3 16 16 N 1.38412 * 126.37014 * 179.82096 * 15 14 13 17 17 C 1.46846 * 111.00092 * 123.90391 * 16 15 14 18 18 C 1.53042 * 109.52384 * 174.15941 * 17 16 15 19 19 C 1.53120 * 109.27679 * 59.17688 * 18 17 16 20 20 C 1.53114 * 109.16161 * 302.34397 * 19 18 17 21 21 H 1.09004 * 109.50600 * 297.71890 * 20 19 18 22 22 C 1.50704 * 109.53752 * 177.61732 * 20 19 18 23 23 H 1.08002 * 119.99902 * 240.17827 * 22 20 19 24 24 C 1.37872 * 120.00104 * 60.17488 * 22 20 19 25 25 N 1.31521 * 119.99981 * 0.02562 * 24 22 20 26 26 Si 1.86792 * 120.00192 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47396 * 120.00320 * 26 24 22 29 29 H 1.48510 * 109.47102 * 240.00200 * 26 24 22 30 30 C 1.46850 * 111.00302 * 359.69035 * 16 15 14 31 31 H 1.09006 * 109.47330 * 269.95767 * 1 2 3 32 32 H 1.09002 * 109.47673 * 29.95949 * 1 2 3 33 33 H 1.08998 * 109.47436 * 149.96226 * 1 2 3 34 34 H 1.09002 * 115.54597 * 129.34851 * 9 8 6 35 35 H 1.09007 * 117.50228 * 359.97438 * 10 9 8 36 36 H 1.09004 * 117.50131 * 145.02058 * 10 9 8 37 37 H 1.09002 * 117.49568 * 214.97197 * 11 9 8 38 38 H 1.08992 * 117.50280 * 359.97438 * 11 9 8 39 39 H 1.08993 * 109.46639 * 54.14106 * 17 16 15 40 40 H 1.09010 * 109.45973 * 294.17272 * 17 16 15 41 41 H 1.08998 * 109.50041 * 299.23667 * 18 17 16 42 42 H 1.09005 * 109.50105 * 179.11475 * 18 17 16 43 43 H 1.08995 * 109.52336 * 182.44133 * 19 18 17 44 44 H 1.09002 * 109.52444 * 62.25092 * 19 18 17 45 45 H 0.96993 * 120.00430 * 180.02562 * 25 24 22 46 46 H 1.08995 * 109.45831 * 65.81916 * 30 16 15 47 47 H 1.08998 * 109.45719 * 305.85766 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2960 1.0962 0.0000 4 6 1.8793 2.5151 0.0005 5 7 0.6367 2.9506 -0.0047 6 7 0.7009 4.3535 0.0006 7 1 -0.0492 4.9685 0.0006 8 6 2.0068 4.6773 0.0006 9 6 2.5690 6.0756 -0.0003 10 6 1.6244 7.2165 -0.3832 11 6 2.7225 6.7744 -1.3526 12 7 2.7043 3.5727 0.0005 13 7 3.5284 0.6451 -0.0006 14 7 3.5245 -0.6401 0.0049 15 6 2.2894 -1.0875 -0.0005 16 7 1.8972 -2.4149 -0.0007 17 6 1.0092 -2.7014 1.1332 18 6 0.4811 -4.1334 1.0202 19 6 1.6616 -5.1085 1.0131 20 6 2.5959 -4.7581 -0.1482 21 1 2.0632 -4.8750 -1.0920 22 6 3.7911 -5.6759 -0.1281 23 1 4.7847 -5.2664 -0.0212 24 6 3.6160 -7.0384 -0.2461 25 7 2.4061 -7.5371 -0.3768 26 14 5.0973 -8.1761 -0.2205 27 1 6.3361 -7.3724 -0.0636 28 1 4.9747 -9.1229 0.9170 29 1 5.1587 -8.9376 -1.4940 30 6 3.0628 -3.3081 -0.0013 31 1 -0.3634 -0.0008 1.0277 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3634 -0.8896 -0.5144 34 1 3.3228 6.2796 0.7602 35 1 0.5963 6.9558 -0.6351 36 1 1.7565 8.1716 0.1253 37 1 3.5770 7.4387 -1.4817 38 1 2.4173 6.2228 -2.2417 39 1 0.1719 -2.0038 1.1242 40 1 1.5635 -2.5913 2.0654 41 1 -0.0849 -4.2404 0.0948 42 1 -0.1655 -4.3509 1.8703 43 1 1.2925 -6.1265 0.8891 44 1 2.2052 -5.0293 1.9546 45 1 2.2828 -8.4956 -0.4594 46 1 3.6074 -3.1950 0.9361 47 1 3.7169 -3.0509 -0.8344 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647666312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:03 Heat of formation + Delta-G solvation = 188.900107 kcal Electronic energy + Delta-G solvation = -29457.003152 eV Core-core repulsion = 25485.556155 eV Total energy + Delta-G solvation = -3971.446997 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.182 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.20692 -43.34318 -40.06772 -38.19619 -36.39049 -35.68813 -34.20034 -33.60278 -32.50808 -31.81847 -30.31305 -28.74110 -27.07310 -25.70355 -25.29182 -25.16439 -23.38024 -23.14709 -22.37230 -21.54577 -21.46843 -20.49062 -19.15430 -18.79991 -18.00210 -17.76743 -17.28177 -16.96960 -16.70709 -16.46712 -16.37584 -15.59494 -15.55288 -15.32364 -14.78914 -14.49638 -14.40537 -14.25793 -14.14121 -13.74314 -13.41161 -13.01384 -12.88150 -12.84047 -12.69513 -12.55900 -12.44816 -12.22218 -11.92838 -11.88749 -11.83421 -11.74634 -11.53593 -11.49257 -11.37523 -11.28037 -11.10163 -10.99324 -10.73415 -10.52706 -10.37492 -9.31215 -8.09719 -6.21953 -0.24068 0.62485 0.82804 1.29962 1.33182 1.41224 1.43931 1.55576 1.99899 2.31183 2.44630 2.62121 2.70556 3.18148 3.18432 3.45376 3.53220 3.75574 3.81560 3.93168 4.03421 4.07807 4.18644 4.20212 4.28417 4.37207 4.37936 4.50835 4.55852 4.68602 4.73208 4.75136 4.76880 4.82120 4.89311 4.97718 4.99108 5.03436 5.06274 5.19935 5.24304 5.31074 5.49203 5.64086 5.66320 5.94848 5.97968 6.06692 6.13384 6.37556 6.73305 6.86558 7.45293 7.48521 8.95543 Molecular weight = 343.18amu Principal moments of inertia in cm(-1) A = 0.028020 B = 0.002118 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.059201 B =13216.446228 C =14002.134935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.464 5.464 3 C 0.233 3.767 4 C 0.304 3.696 5 N -0.294 5.294 6 N -0.452 5.452 7 H 0.462 0.538 8 C 0.333 3.667 9 C -0.110 4.110 10 C -0.142 4.142 11 C -0.154 4.154 12 N -0.538 5.538 13 N -0.261 5.261 14 N -0.356 5.356 15 C 0.386 3.614 16 N -0.448 5.448 17 C 0.058 3.942 18 C -0.105 4.105 19 C -0.109 4.109 20 C 0.055 3.945 21 H 0.008 0.992 22 C -0.536 4.536 23 H 0.048 0.952 24 C 0.020 3.980 25 N -0.910 5.910 26 Si 0.952 3.048 27 H -0.273 1.273 28 H -0.277 1.277 29 H -0.280 1.280 30 C 0.101 3.899 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.151 0.849 35 H 0.108 0.892 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.040 0.960 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.027 0.973 45 H 0.262 0.738 46 H 0.032 0.968 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.722 30.595 2.420 32.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.160 5.160 3 C -0.035 4.035 4 C 0.022 3.978 5 N -0.128 5.128 6 N -0.174 5.174 7 H 0.313 0.687 8 C 0.055 3.945 9 C -0.131 4.131 10 C -0.179 4.179 11 C -0.193 4.193 12 N -0.267 5.267 13 N -0.104 5.104 14 N -0.203 5.203 15 C 0.029 3.971 16 N -0.172 5.172 17 C -0.068 4.068 18 C -0.143 4.143 19 C -0.147 4.147 20 C 0.036 3.964 21 H 0.026 0.974 22 C -0.574 4.574 23 H 0.066 0.934 24 C -0.179 4.179 25 N -0.549 5.549 26 Si 0.778 3.222 27 H -0.197 1.197 28 H -0.203 1.203 29 H -0.205 1.205 30 C -0.025 4.025 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.168 0.832 35 H 0.127 0.873 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.107 0.893 39 H 0.124 0.876 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.046 0.954 45 H 0.071 0.929 46 H 0.050 0.950 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.899 29.762 1.991 31.758 hybrid contribution -0.280 -0.672 0.365 0.814 sum -11.180 29.090 2.356 31.254 Atomic orbital electron populations 1.22612 0.72100 1.06751 1.05882 1.46054 1.10080 1.03585 1.56250 1.20511 0.86753 0.85745 1.10539 1.19756 0.87479 0.89285 1.01290 1.78129 1.18124 0.89843 1.26698 1.47849 1.08980 1.04401 1.56214 0.68685 1.23919 0.81138 0.96107 0.93317 1.20607 1.05877 0.82390 1.04210 1.23310 0.95810 0.97606 1.01201 1.23178 1.02781 1.01806 0.91524 1.70452 1.34583 0.96454 1.25196 1.74309 1.17474 1.02762 1.15857 1.74776 1.17101 1.02882 1.25579 1.22905 0.86325 0.88122 0.99716 1.58756 1.20079 0.95478 1.42846 1.22500 0.95502 0.99879 0.88898 1.21615 0.98060 0.91808 1.02806 1.21531 0.95681 1.00337 0.97134 1.18651 0.94643 0.88132 0.94940 0.97393 1.21420 0.93266 0.92232 1.50514 0.93414 1.25604 0.98313 0.99374 0.94630 1.69992 1.21806 1.12772 1.50330 0.85597 0.80054 0.78836 0.77721 1.19738 1.20280 1.20550 1.22007 0.88173 0.92319 0.99986 0.87807 0.87239 0.87384 0.83187 0.87318 0.84608 0.85595 0.89280 0.87614 0.94163 0.91496 0.89066 0.91193 0.95373 0.92860 0.94973 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 9.06 127.77 1.16 2.53 16 2 N -0.46 -14.66 3.23 -540.09 -1.74 -16.40 16 3 C 0.23 8.22 8.00 136.23 1.09 9.31 16 4 C 0.30 8.99 7.98 137.21 1.09 10.09 16 5 N -0.29 -6.54 11.00 -52.57 -0.58 -7.12 16 6 N -0.45 -6.36 7.29 -50.74 -0.37 -6.73 16 7 H 0.46 2.23 8.17 -213.10 -1.74 0.49 16 8 C 0.33 5.82 7.71 138.25 1.07 6.89 16 9 C -0.11 -0.97 6.33 -11.54 -0.07 -1.04 16 10 C -0.14 -0.18 10.12 30.59 0.31 0.13 16 11 C -0.15 -0.92 10.23 30.59 0.31 -0.61 16 12 N -0.54 -15.17 11.22 -181.26 -2.03 -17.20 16 13 N -0.26 -11.06 12.23 -50.79 -0.62 -11.68 16 14 N -0.36 -15.81 11.22 -58.02 -0.65 -16.46 16 15 C 0.39 14.92 7.21 260.12 1.88 16.79 16 16 N -0.45 -17.30 4.69 -706.17 -3.32 -20.61 16 17 C 0.06 1.83 5.27 86.33 0.46 2.29 16 18 C -0.11 -3.56 6.09 30.65 0.19 -3.38 16 19 C -0.11 -4.95 5.03 30.67 0.15 -4.79 16 20 C 0.06 2.82 2.26 -11.49 -0.03 2.79 16 21 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 22 C -0.54 -30.25 8.56 25.60 0.22 -30.03 16 23 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 24 C 0.02 1.12 5.30 84.65 0.45 1.57 16 25 N -0.91 -51.73 11.37 21.45 0.24 -51.48 16 26 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 27 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 29 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 30 C 0.10 4.68 4.10 86.32 0.35 5.04 16 31 H 0.10 1.65 7.74 -2.38 -0.02 1.63 16 32 H 0.11 2.01 6.63 -2.39 -0.02 1.99 16 33 H 0.11 2.04 7.64 -2.39 -0.02 2.02 16 34 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 -0.15 7.35 -2.38 -0.02 -0.17 16 36 H 0.14 -0.34 8.14 -2.38 -0.02 -0.36 16 37 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.11 2.51 5.19 -2.39 -0.01 2.50 16 40 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 43 H 0.07 3.58 6.17 -2.39 -0.01 3.56 16 44 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 46 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.06 2.88 7.92 -2.39 -0.02 2.86 16 Total: -1.00 -78.23 380.66 0.86 -77.37 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -0.72 Total: 6.27 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 8.63 Total: 17.58 kcal Atomic # 7 Polarization: -138.62 SS G_CDS: -9.07 Total: -147.69 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -78.23 0.86 -77.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647666312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 266.273 kcal (2) G-P(sol) polarization free energy of solvation -78.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds